Wall clock time and date at job start Mon Mar 30 2020 03:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40299 * 126.08840 * 2 1 4 4 C 1.31075 * 108.26748 * 179.97438 * 3 2 1 5 5 C 1.39295 * 108.07915 * 0.38116 * 4 3 2 6 6 C 1.34316 * 126.09307 * 180.30712 * 2 1 3 7 7 C 1.50828 * 128.03438 * 359.79390 * 6 2 1 8 8 O 1.42896 * 109.68111 * 76.87520 * 7 6 2 9 9 C 1.50699 * 109.68083 * 316.35857 * 7 6 2 10 10 H 1.08001 * 120.00105 * 354.46210 * 9 7 6 11 11 C 1.37878 * 120.00012 * 174.46097 * 9 7 6 12 12 N 1.31513 * 120.00142 * 7.75891 * 11 9 7 13 13 Si 1.86805 * 119.99881 * 187.75683 * 11 9 7 14 14 H 1.48493 * 109.47040 * 84.97263 * 13 11 9 15 15 H 1.48499 * 109.46610 * 204.97263 * 13 11 9 16 16 H 1.48498 * 109.47221 * 324.96825 * 13 11 9 17 17 C 1.53364 * 108.38425 * 196.63516 * 7 6 2 18 18 C 1.53112 * 109.50811 * 310.06107 * 17 7 6 19 19 C 1.50840 * 127.90100 * 179.65420 * 5 4 3 20 20 H 1.08999 * 109.47168 * 269.68816 * 1 2 3 21 21 H 1.09000 * 109.46748 * 149.68936 * 1 2 3 22 22 H 1.09000 * 109.47379 * 29.69008 * 1 2 3 23 23 H 1.07999 * 125.96083 * 180.11021 * 4 3 2 24 24 H 0.96707 * 114.00079 * 177.12328 * 8 7 6 25 25 H 0.96994 * 120.00454 * 179.97438 * 12 11 9 26 26 H 1.09005 * 109.46437 * 70.06905 * 17 7 6 27 27 H 1.08994 * 109.46693 * 190.05493 * 17 7 6 28 28 H 1.08994 * 109.46206 * 190.29140 * 18 17 7 29 29 H 1.08998 * 109.46253 * 310.26949 * 18 17 7 30 30 H 1.09000 * 109.67860 * 76.87274 * 19 5 4 31 31 H 1.08992 * 109.71463 * 316.33020 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1338 0.0000 4 6 3.5393 0.7326 0.0006 5 6 3.5456 -0.6603 -0.0079 6 6 2.2563 -1.0853 -0.0058 7 6 1.8438 -2.5361 -0.0093 8 8 1.4145 -2.9112 -1.3196 9 6 0.7201 -2.7466 0.9726 10 1 0.3997 -1.9348 1.6087 11 6 0.1011 -3.9756 1.0587 12 7 0.5865 -5.0042 0.3984 13 14 -1.4271 -4.1797 2.1135 14 1 -2.6259 -3.7894 1.3288 15 1 -1.5517 -5.5982 2.5350 16 1 -1.3185 -3.3141 3.3151 17 6 3.0540 -3.3841 0.4011 18 6 4.2698 -2.9790 -0.4368 19 6 4.7400 -1.5815 -0.0178 20 1 -0.3633 -0.0056 1.0276 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3634 0.8927 -0.5090 23 1 4.4106 1.3708 0.0024 24 1 1.1763 -3.8448 -1.4033 25 1 0.1513 -5.8688 0.4592 26 1 3.2701 -3.2215 1.4570 27 1 2.8325 -4.4381 0.2337 28 1 5.0751 -3.6963 -0.2786 29 1 3.9962 -2.9670 -1.4918 30 1 5.1766 -1.6271 0.9799 31 1 5.4818 -1.2141 -0.7268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260967803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:16 Heat of formation + Delta-G solvation = 16.063241 kcal Electronic energy + Delta-G solvation = -15966.000946 eV Core-core repulsion = 13441.636818 eV Total energy + Delta-G solvation = -2524.364128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67045 -36.75340 -34.16832 -32.23464 -32.10052 -28.77567 -28.29141 -26.29843 -24.54497 -21.80325 -20.99301 -19.97563 -17.74383 -17.09855 -15.81446 -15.11542 -14.56877 -14.26592 -13.89848 -13.44143 -12.87574 -12.74043 -12.50825 -12.31642 -11.86656 -11.57478 -11.53031 -11.14000 -10.76184 -10.54464 -10.29659 -10.26929 -9.82225 -9.65636 -9.52130 -8.77931 -8.47550 -8.17972 -7.40526 -6.33941 -4.43349 2.73918 3.14311 3.22118 3.24502 3.37878 3.55561 4.19366 4.92518 5.33803 5.57126 5.78393 5.85746 5.91841 5.96312 6.00153 6.27175 6.42976 6.47308 6.55284 6.61006 6.64741 6.76917 6.95885 7.21116 7.35114 7.47836 7.56143 7.75194 7.91691 7.95985 8.52750 8.59652 9.24796 9.35321 10.70634 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.012851 C = 0.010089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.575319 B = 2178.217212 C = 2774.708595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.352 5.352 3 N -0.329 5.329 4 C 0.042 3.958 5 C -0.267 4.267 6 C 0.151 3.849 7 C 0.310 3.690 8 O -0.586 6.586 9 C -0.544 4.544 10 H 0.062 0.938 11 C 0.078 3.922 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.123 4.123 18 C -0.122 4.122 19 C -0.030 4.030 20 H 0.067 0.933 21 H 0.102 0.898 22 H 0.069 0.931 23 H 0.171 0.829 24 H 0.386 0.614 25 H 0.270 0.730 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 3.077 -0.536 4.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.132 5.132 3 N -0.152 5.152 4 C -0.142 4.142 5 C -0.278 4.278 6 C 0.021 3.979 7 C 0.269 3.731 8 O -0.395 6.395 9 C -0.582 4.582 10 H 0.080 0.920 11 C -0.125 4.125 12 N -0.531 5.531 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.162 4.162 18 C -0.160 4.160 19 C -0.069 4.069 20 H 0.085 0.915 21 H 0.121 0.879 22 H 0.087 0.913 23 H 0.188 0.812 24 H 0.238 0.762 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.049 4.540 -0.689 5.028 hybrid contribution -0.426 -1.369 0.826 1.654 sum 1.623 3.171 0.137 3.565 Atomic orbital electron populations 1.21842 0.74557 1.03746 1.02824 1.48027 1.06446 1.03359 1.55342 1.77294 1.01449 1.08843 1.27621 1.23321 0.94998 0.94494 1.01403 1.19867 0.94667 0.93394 1.19881 1.21290 0.89687 0.91097 0.95857 1.17202 0.91615 0.81917 0.82354 1.86124 1.88468 1.33330 1.31618 1.21616 1.17568 0.97680 1.21376 0.91992 1.24942 0.97302 0.95141 0.95148 1.69619 1.39477 1.00974 1.43011 0.86488 0.82893 0.77524 0.80481 1.20162 1.20940 1.19823 1.22164 0.93371 1.02450 0.98216 1.21664 0.98264 0.95091 1.00935 1.19856 0.93586 0.93603 0.99839 0.91483 0.87943 0.91258 0.81152 0.76248 0.91978 0.93035 0.89209 0.93288 0.92121 0.92560 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.16 9.86 59.85 0.59 2.75 16 2 N -0.35 -7.91 4.00 -63.88 -0.26 -8.17 16 3 N -0.33 -7.11 12.59 30.54 0.38 -6.72 16 4 C 0.04 0.82 12.00 -17.48 -0.21 0.61 16 5 C -0.27 -5.67 5.91 -105.05 -0.62 -6.29 16 6 C 0.15 3.56 5.81 -82.33 -0.48 3.08 16 7 C 0.31 7.54 0.56 -92.67 -0.05 7.49 16 8 O -0.59 -14.71 12.55 -35.23 -0.44 -15.15 16 9 C -0.54 -13.83 6.67 -34.44 -0.23 -14.06 16 10 H 0.06 1.60 6.43 -52.49 -0.34 1.26 16 11 C 0.08 1.94 5.24 -17.82 -0.09 1.84 16 12 N -0.89 -22.34 9.98 55.43 0.55 -21.79 16 13 Si 0.90 19.65 29.54 -169.99 -5.02 14.62 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 C -0.12 -2.80 4.56 -26.49 -0.12 -2.92 16 18 C -0.12 -2.38 5.88 -26.53 -0.16 -2.53 16 19 C -0.03 -0.56 6.28 -27.67 -0.17 -0.73 16 20 H 0.07 1.23 7.63 -51.93 -0.40 0.83 16 21 H 0.10 2.09 7.28 -51.93 -0.38 1.72 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 24 H 0.39 9.63 7.05 45.56 0.32 9.95 16 25 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 26 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 27 H 0.09 2.16 6.66 -51.93 -0.35 1.81 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.24 7.78 -51.93 -0.40 0.84 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 252.58 15.07 3.81 3.81 Total: -1.00 -27.76 252.58 -5.73 -33.49 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.21 Total: 10.67 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.54 Total: -10.76 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.68 Total: -36.68 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.44 Total: -15.15 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.76 -5.73 -33.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.554 kcal (2) G-P(sol) polarization free energy of solvation -27.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds