Wall clock time and date at job start Mon Mar 30 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35199 * 126.00473 * 2 1 4 4 C 1.34576 * 107.61592 * 179.97438 * 3 2 1 5 5 C 1.40483 * 108.03713 * 0.08220 * 4 3 2 6 6 N 1.30120 * 108.23070 * 0.13382 * 5 4 3 7 7 C 1.50947 * 123.47970 * 179.86722 * 5 4 3 8 8 C 1.53371 * 108.20993 * 343.32208 * 7 5 4 9 9 C 1.53016 * 109.75262 * 50.66028 * 8 7 5 10 10 C 1.50881 * 128.32395 * 180.18515 * 4 3 2 11 11 O 1.42900 * 109.71822 * 282.95739 * 10 4 3 12 12 C 1.50698 * 109.75891 * 43.58968 * 10 4 3 13 13 H 1.08008 * 119.99775 * 3.86897 * 12 10 4 14 14 C 1.37879 * 120.00484 * 183.87405 * 12 10 4 15 15 N 1.31518 * 119.99677 * 6.60613 * 14 12 10 16 16 Si 1.86789 * 120.00293 * 186.61275 * 14 12 10 17 17 H 1.48499 * 109.47436 * 59.99454 * 16 14 12 18 18 H 1.48501 * 109.47218 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47056 * 299.99704 * 16 14 12 20 20 H 1.08994 * 109.47208 * 89.99904 * 1 2 3 21 21 H 1.08995 * 109.47283 * 210.00203 * 1 2 3 22 22 H 1.09007 * 109.47055 * 329.99800 * 1 2 3 23 23 H 1.07996 * 126.18960 * 0.02562 * 3 2 1 24 24 H 1.09008 * 109.71653 * 103.00193 * 7 5 4 25 25 H 1.09001 * 109.71695 * 223.59793 * 7 5 4 26 26 H 1.08999 * 109.42612 * 170.75068 * 8 7 5 27 27 H 1.09005 * 109.42267 * 290.63110 * 8 7 5 28 28 H 1.09005 * 109.43354 * 48.36899 * 9 8 7 29 29 H 1.09002 * 109.43396 * 168.26619 * 9 8 7 30 30 H 0.96701 * 114.00075 * 61.26545 * 11 10 4 31 31 H 0.96993 * 119.99959 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5368 0.6692 0.0006 5 6 3.5282 -0.7356 -0.0010 6 7 2.2898 -1.1351 -0.0053 7 6 4.7820 -1.5760 -0.0038 8 6 5.9566 -0.6831 -0.4227 9 6 5.9638 0.5922 0.4228 10 6 4.7980 1.4973 0.0046 11 8 5.0373 2.0177 -1.3045 12 6 4.6588 2.6328 0.9855 13 1 3.7728 2.7116 1.5982 14 6 5.6623 3.5713 1.1008 15 7 6.6796 3.5519 0.2676 16 14 5.5770 4.8701 2.4406 17 1 5.5496 4.2090 3.7700 18 1 6.7683 5.7522 2.3514 19 1 4.3455 5.6815 2.2658 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9295 2.1219 0.0004 24 1 4.9605 -1.9737 0.9954 25 1 4.6727 -2.3972 -0.7121 26 1 6.8924 -1.2218 -0.2743 27 1 5.8535 -0.4187 -1.4752 28 1 5.8595 0.3300 1.4757 29 1 6.9047 1.1216 0.2726 30 1 4.3370 2.5993 -1.6307 31 1 7.3857 4.2118 0.3489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260972272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:40 Heat of formation + Delta-G solvation = 24.758900 kcal Electronic energy + Delta-G solvation = -15645.380528 eV Core-core repulsion = 13121.393472 eV Total energy + Delta-G solvation = -2523.987056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.66246 -36.61819 -34.02995 -32.08943 -31.71714 -30.01113 -27.38717 -26.47731 -24.70984 -21.71899 -20.78134 -19.72375 -17.95249 -16.76025 -16.09805 -14.92217 -14.58005 -14.38308 -14.05863 -13.64254 -13.05139 -12.64105 -12.44107 -12.27345 -11.81315 -11.40755 -11.25860 -11.04989 -10.91384 -10.67000 -10.28215 -9.99951 -9.98227 -9.62314 -8.80769 -8.53161 -8.49134 -8.03004 -7.50764 -5.92636 -4.10594 2.59065 3.10713 3.29845 3.36244 3.38554 3.62261 4.42992 4.91943 5.30038 5.38307 5.42492 5.54726 5.58762 5.80994 5.87685 6.10616 6.25327 6.47774 6.57865 6.60093 6.69610 6.72656 6.99865 7.36570 7.37536 7.64964 7.79373 7.86455 7.98301 8.29873 8.46248 8.88649 9.47065 9.67796 11.07346 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029024 B = 0.011196 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.496478 B = 2500.256627 C = 3101.798795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.400 5.400 3 C 0.053 3.947 4 C -0.216 4.216 5 C 0.077 3.923 6 N -0.314 5.314 7 C -0.033 4.033 8 C -0.117 4.117 9 C -0.088 4.088 10 C 0.323 3.677 11 O -0.550 6.550 12 C -0.557 4.557 13 H 0.054 0.946 14 C 0.082 3.918 15 N -0.851 5.851 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 H 0.063 0.937 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.168 0.832 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.346 0.654 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -4.972 -0.610 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.185 5.185 3 C -0.089 4.089 4 C -0.227 4.227 5 C -0.090 4.090 6 N -0.136 5.136 7 C -0.072 4.072 8 C -0.156 4.156 9 C -0.125 4.125 10 C 0.283 3.717 11 O -0.352 6.352 12 C -0.595 4.595 13 H 0.072 0.928 14 C -0.124 4.124 15 N -0.487 5.487 16 Si 0.710 3.290 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.204 1.204 20 H 0.081 0.919 21 H 0.097 0.903 22 H 0.098 0.902 23 H 0.185 0.815 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.189 0.811 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.226 -6.223 -0.607 9.555 hybrid contribution -0.314 1.886 0.856 2.095 sum -7.540 -4.337 0.249 8.702 Atomic orbital electron populations 1.21601 0.75692 1.03486 1.02244 1.48400 1.05581 1.03841 1.60688 1.22027 0.91077 0.92576 1.03227 1.21508 0.96930 0.93647 1.10629 1.22397 0.92764 0.94859 0.99010 1.76812 1.01645 1.08310 1.26785 1.20100 0.89600 0.96099 1.01410 1.21656 0.95301 0.96994 1.01608 1.21403 1.01461 0.92822 0.96858 1.17050 0.84537 0.88317 0.81841 1.86493 1.48457 1.66395 1.33902 1.21530 1.04647 1.10273 1.23050 0.92810 1.25002 0.95370 0.97092 0.94975 1.70108 1.09903 1.34490 1.34150 0.86846 0.77413 0.81716 0.83027 1.20273 1.21288 1.20372 0.91858 0.90264 0.90197 0.81464 0.90829 0.91432 0.92823 0.91575 0.93079 0.89901 0.81051 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.39 11.47 59.85 0.69 2.07 16 2 N -0.40 -7.35 4.02 -68.30 -0.27 -7.62 16 3 C 0.05 1.06 10.78 -17.36 -0.19 0.87 16 4 C -0.22 -4.86 5.02 -104.98 -0.53 -5.39 16 5 C 0.08 1.65 7.10 -82.35 -0.58 1.07 16 6 N -0.31 -6.47 12.56 33.75 0.42 -6.05 16 7 C -0.03 -0.61 6.31 -27.57 -0.17 -0.78 16 8 C -0.12 -2.33 5.85 -26.53 -0.16 -2.48 16 9 C -0.09 -2.07 4.60 -26.52 -0.12 -2.20 16 10 C 0.32 7.98 0.66 -92.63 -0.06 7.92 16 11 O -0.55 -14.04 11.56 -35.23 -0.41 -14.45 16 12 C -0.56 -14.79 7.95 -34.44 -0.27 -15.07 16 13 H 0.05 1.43 7.47 -52.48 -0.39 1.03 16 14 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 15 N -0.85 -23.83 11.34 55.43 0.63 -23.20 16 16 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.17 2.99 8.06 -52.49 -0.42 2.57 16 24 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.39 7.74 -51.93 -0.40 0.99 16 28 H 0.05 1.20 8.08 -51.93 -0.42 0.79 16 29 H 0.08 2.16 7.03 -51.93 -0.36 1.80 16 30 H 0.35 8.05 9.05 45.56 0.41 8.46 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 259.91 15.07 3.92 3.92 Total: -1.00 -31.20 259.91 -5.49 -36.69 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.26 Total: 6.94 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.49 Total: -11.89 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.78 Total: -36.87 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.41 Total: -14.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.20 -5.49 -36.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.449 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds