Wall clock time and date at job start Mon Mar 30 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35199 * 126.00473 * 2 1 4 4 C 1.34576 * 107.61592 * 179.97438 * 3 2 1 5 5 C 1.40483 * 108.03713 * 0.08220 * 4 3 2 6 6 N 1.30120 * 108.23070 * 0.13382 * 5 4 3 7 7 C 1.50947 * 123.47970 * 179.86722 * 5 4 3 8 8 C 1.53371 * 108.20993 * 343.32208 * 7 5 4 9 9 C 1.53016 * 109.75262 * 50.66028 * 8 7 5 10 10 C 1.50881 * 128.32395 * 180.18515 * 4 3 2 11 11 O 1.42900 * 109.71822 * 282.95739 * 10 4 3 12 12 C 1.50698 * 109.75891 * 43.58968 * 10 4 3 13 13 H 1.08008 * 119.99775 * 3.86897 * 12 10 4 14 14 C 1.37879 * 120.00484 * 183.87405 * 12 10 4 15 15 N 1.31518 * 119.99677 * 6.60613 * 14 12 10 16 16 Si 1.86789 * 120.00293 * 186.61275 * 14 12 10 17 17 H 1.48499 * 109.47436 * 59.99454 * 16 14 12 18 18 H 1.48501 * 109.47218 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47056 * 299.99704 * 16 14 12 20 20 H 1.08994 * 109.47208 * 89.99904 * 1 2 3 21 21 H 1.08995 * 109.47283 * 210.00203 * 1 2 3 22 22 H 1.09007 * 109.47055 * 329.99800 * 1 2 3 23 23 H 1.07996 * 126.18960 * 0.02562 * 3 2 1 24 24 H 1.09008 * 109.71653 * 103.00193 * 7 5 4 25 25 H 1.09001 * 109.71695 * 223.59793 * 7 5 4 26 26 H 1.08999 * 109.42612 * 170.75068 * 8 7 5 27 27 H 1.09005 * 109.42267 * 290.63110 * 8 7 5 28 28 H 1.09005 * 109.43354 * 48.36899 * 9 8 7 29 29 H 1.09002 * 109.43396 * 168.26619 * 9 8 7 30 30 H 0.96701 * 114.00075 * 61.26545 * 11 10 4 31 31 H 0.96993 * 119.99959 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5368 0.6692 0.0006 5 6 3.5282 -0.7356 -0.0010 6 7 2.2898 -1.1351 -0.0053 7 6 4.7820 -1.5760 -0.0038 8 6 5.9566 -0.6831 -0.4227 9 6 5.9638 0.5922 0.4228 10 6 4.7980 1.4973 0.0046 11 8 5.0373 2.0177 -1.3045 12 6 4.6588 2.6328 0.9855 13 1 3.7728 2.7116 1.5982 14 6 5.6623 3.5713 1.1008 15 7 6.6796 3.5519 0.2676 16 14 5.5770 4.8701 2.4406 17 1 5.5496 4.2090 3.7700 18 1 6.7683 5.7522 2.3514 19 1 4.3455 5.6815 2.2658 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9295 2.1219 0.0004 24 1 4.9605 -1.9737 0.9954 25 1 4.6727 -2.3972 -0.7121 26 1 6.8924 -1.2218 -0.2743 27 1 5.8535 -0.4187 -1.4752 28 1 5.8595 0.3300 1.4757 29 1 6.9047 1.1216 0.2726 30 1 4.3370 2.5993 -1.6307 31 1 7.3857 4.2118 0.3489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:39 Heat of formation + Delta-G solvation = 2.762936 kcal Electronic energy + Delta-G solvation = -15646.334345 eV Core-core repulsion = 13121.393472 eV Total energy + Delta-G solvation = -2524.940872 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20007 -38.38012 -35.70592 -34.11983 -33.13689 -31.67748 -29.09930 -27.95349 -26.48447 -23.29984 -22.45015 -21.35376 -19.62525 -18.67709 -17.66856 -16.55245 -16.29196 -16.08764 -15.60655 -15.18258 -14.71450 -14.35616 -13.81774 -13.50335 -13.38962 -13.10900 -13.02989 -12.83475 -12.68028 -12.42750 -12.07665 -11.78004 -11.70093 -11.34731 -10.66720 -10.50106 -10.02331 -9.94933 -9.08499 -7.95766 -6.19995 1.07050 1.43366 1.46252 1.52489 1.80170 1.98969 2.47630 3.25038 3.61526 4.05316 4.17975 4.29070 4.34081 4.45477 4.48574 4.69034 4.71130 4.91937 4.92848 4.99461 5.07546 5.13916 5.37406 5.60316 5.63626 5.80429 5.95594 6.10126 6.32317 6.34110 6.82658 6.93088 7.46344 7.72672 9.02776 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029024 B = 0.011196 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.496478 B = 2500.256627 C = 3101.798795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.392 5.392 3 C 0.060 3.940 4 C -0.254 4.254 5 C 0.061 3.939 6 N -0.326 5.326 7 C -0.029 4.029 8 C -0.107 4.107 9 C -0.086 4.086 10 C 0.317 3.683 11 O -0.566 6.566 12 C -0.566 4.566 13 H 0.049 0.951 14 C 0.038 3.962 15 N -0.881 5.881 16 Si 0.942 3.058 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.270 1.270 20 H 0.083 0.917 21 H 0.091 0.909 22 H 0.106 0.894 23 H 0.185 0.815 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.351 0.649 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 -5.472 -0.152 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.177 5.177 3 C -0.085 4.085 4 C -0.265 4.265 5 C -0.105 4.105 6 N -0.149 5.149 7 C -0.068 4.068 8 C -0.145 4.145 9 C -0.124 4.124 10 C 0.277 3.723 11 O -0.369 6.369 12 C -0.604 4.604 13 H 0.067 0.933 14 C -0.166 4.166 15 N -0.517 5.517 16 Si 0.768 3.232 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.195 1.195 20 H 0.102 0.898 21 H 0.110 0.890 22 H 0.125 0.875 23 H 0.202 0.798 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.195 0.805 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.805 -6.740 -0.146 11.090 hybrid contribution 0.056 2.047 0.700 2.164 sum -8.749 -4.693 0.554 9.944 Atomic orbital electron populations 1.22085 0.72219 1.05510 1.04236 1.48820 1.07450 1.02714 1.58685 1.22241 0.90796 0.93703 1.01716 1.21376 0.97014 0.94334 1.13799 1.22733 0.93823 0.94685 0.99307 1.76750 1.01571 1.09392 1.27140 1.20148 0.87791 0.95970 1.02885 1.21523 0.97533 0.95748 0.99666 1.21297 0.99574 0.94405 0.97137 1.17040 0.86165 0.88289 0.80845 1.86460 1.49155 1.66737 1.34546 1.21816 1.04368 1.11032 1.23199 0.93271 1.25660 0.95109 0.99042 0.96749 1.70240 1.10531 1.35281 1.35693 0.85895 0.77526 0.79415 0.80359 1.20237 1.21255 1.19485 0.89829 0.88983 0.87537 0.79802 0.89352 0.89057 0.90157 0.93193 0.93834 0.93134 0.80529 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.11 11.47 127.77 1.47 3.58 16 2 N -0.39 -13.45 4.02 -369.99 -1.49 -14.94 16 3 C 0.06 2.29 10.78 83.34 0.90 3.19 16 4 C -0.25 -11.29 5.02 -20.10 -0.10 -11.39 16 5 C 0.06 2.54 7.10 43.44 0.31 2.85 16 6 N -0.33 -12.80 12.56 -47.14 -0.59 -13.39 16 7 C -0.03 -1.02 6.31 30.05 0.19 -0.83 16 8 C -0.11 -4.16 5.85 30.72 0.18 -3.98 16 9 C -0.09 -4.14 4.60 30.73 0.14 -4.00 16 10 C 0.32 15.82 0.66 -12.10 -0.01 15.81 16 11 O -0.57 -29.48 11.56 -148.98 -1.72 -31.20 16 12 C -0.57 -30.26 7.95 25.60 0.20 -30.06 16 13 H 0.05 2.60 7.47 -2.91 -0.02 2.58 16 14 C 0.04 2.03 5.24 84.65 0.44 2.47 16 15 N -0.88 -50.24 11.34 21.45 0.24 -50.00 16 16 Si 0.94 42.56 29.54 68.60 2.03 44.59 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.19 6.26 8.06 -2.91 -0.02 6.23 16 24 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 25 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.05 2.09 7.74 -2.38 -0.02 2.08 16 28 H 0.04 2.09 8.08 -2.38 -0.02 2.07 16 29 H 0.05 2.71 7.03 -2.39 -0.02 2.69 16 30 H 0.35 16.69 9.05 -74.06 -0.67 16.02 16 31 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -66.71 259.91 2.65 -64.06 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.46 Total: 23.24 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 3.72 Total: -22.36 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.84 Total: -78.33 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -1.72 Total: -31.20 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -66.71 2.65 -64.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.825 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds