Wall clock time and date at job start Mon Mar 30 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48670 * 111.10904 * 2 1 4 4 C 1.54384 * 104.67119 * 201.09884 * 3 2 1 5 5 C 1.54258 * 105.05937 * 23.77194 * 4 3 2 6 6 C 1.48566 * 110.99956 * 244.58270 * 2 1 3 7 7 H 1.08994 * 110.41237 * 40.13735 * 6 2 1 8 8 C 1.50705 * 110.41034 * 277.81973 * 6 2 1 9 9 N 1.30802 * 125.15098 * 318.07450 * 8 6 2 10 10 C 1.33326 * 109.25108 * 179.69935 * 9 8 6 11 11 C 1.39419 * 107.08363 * 0.43859 * 10 9 8 12 12 C 1.39843 * 126.87313 * 179.83700 * 11 10 9 13 13 H 1.08003 * 120.00145 * 199.22303 * 12 11 10 14 14 C 1.40168 * 120.00256 * 19.22106 * 12 11 10 15 15 N 1.30801 * 120.00199 * 196.41323 * 14 12 11 16 16 Si 1.86801 * 119.99773 * 16.69298 * 14 12 11 17 17 H 1.48493 * 109.46946 * 269.72208 * 16 14 12 18 18 H 1.48499 * 109.46883 * 29.72489 * 16 14 12 19 19 H 1.48498 * 109.46961 * 149.72340 * 16 14 12 20 20 O 1.34007 * 125.15257 * 138.05121 * 8 6 2 21 21 H 1.08997 * 109.47346 * 175.41782 * 1 2 3 22 22 H 1.09003 * 109.46898 * 295.41891 * 1 2 3 23 23 H 1.09000 * 109.47170 * 55.41616 * 1 2 3 24 24 H 1.08995 * 110.44613 * 82.26311 * 3 2 1 25 25 H 1.09003 * 110.40558 * 319.91278 * 3 2 1 26 26 H 1.08996 * 110.32287 * 264.87440 * 4 3 2 27 27 H 1.09005 * 110.32381 * 142.66518 * 4 3 2 28 28 H 1.09004 * 110.32296 * 241.10268 * 5 4 3 29 29 H 1.09006 * 110.41289 * 118.93794 * 5 4 3 30 30 H 1.08003 * 126.46401 * 180.27180 * 10 9 8 31 31 H 0.97004 * 119.99953 * 355.30645 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0044 1.3869 0.0000 4 6 3.4451 1.2499 -0.5376 5 6 3.4431 -0.0541 -1.3617 6 6 2.0014 -0.5953 -1.2527 7 1 1.4086 -0.2730 -2.1087 8 6 2.0103 -2.0993 -1.1575 9 7 2.3732 -2.7851 -0.1044 10 6 2.2522 -4.0871 -0.3646 11 6 1.7908 -4.2017 -1.6752 12 6 1.5236 -5.3854 -2.3703 13 1 1.4722 -5.3784 -3.4490 14 6 1.3226 -6.5811 -1.6669 15 7 1.3927 -7.7276 -2.2925 16 14 0.9468 -6.5367 0.1624 17 1 2.2165 -6.5956 0.9301 18 1 0.2282 -5.2790 0.4896 19 1 0.0968 -7.7002 0.5214 20 8 1.6473 -2.9367 -2.1387 21 1 -0.3634 -1.0243 -0.0821 22 1 -0.3633 0.4411 0.9282 23 1 -0.3633 0.5833 -0.8461 24 1 2.0133 1.7917 1.0120 25 1 1.4122 2.0230 -0.6579 26 1 4.1520 1.1745 0.2886 27 1 3.6943 2.0993 -1.1737 28 1 4.1490 -0.7696 -0.9399 29 1 3.6918 0.1535 -2.4025 30 1 2.4729 -4.9000 0.3114 31 1 1.5160 -7.7485 -3.2545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972312.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:36 Heat of formation + Delta-G solvation = -14.382809 kcal Electronic energy + Delta-G solvation = -15206.308643 eV Core-core repulsion = 12680.624276 eV Total energy + Delta-G solvation = -2525.684367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.36151 -39.79660 -36.12938 -35.05412 -33.13771 -32.30430 -30.08394 -26.75384 -25.91407 -23.72654 -22.71439 -21.79504 -20.96949 -20.40191 -18.20729 -17.09606 -16.78225 -16.39789 -15.86067 -15.52058 -15.41377 -15.01188 -14.69540 -14.03236 -13.51731 -13.28697 -12.98840 -12.82116 -12.67263 -12.36737 -12.23254 -12.04691 -11.89939 -11.47502 -11.40199 -11.29894 -10.93834 -9.84433 -9.51151 -9.44829 -6.85025 0.79801 1.32380 1.50957 1.71985 2.02874 2.09171 2.23552 2.80173 3.23032 3.53109 3.72312 3.91754 4.00933 4.29545 4.41762 4.48581 4.53972 4.62416 4.73476 4.78078 4.93221 4.94641 5.03410 5.17318 5.20195 5.26691 5.29918 5.76445 5.92126 5.94521 5.96616 6.11058 6.35468 7.41536 7.73851 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.049930 B = 0.007804 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.645677 B = 3587.075246 C = 3770.065058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.521 5.521 3 C 0.035 3.965 4 C -0.112 4.112 5 C -0.114 4.114 6 C 0.178 3.822 7 H 0.072 0.928 8 C 0.063 3.937 9 N -0.433 5.433 10 C -0.252 4.252 11 C 0.135 3.865 12 C -0.516 4.516 13 H 0.065 0.935 14 C 0.035 3.965 15 N -0.806 5.806 16 Si 1.105 2.895 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.263 1.263 20 O -0.255 6.255 21 H 0.035 0.965 22 H 0.090 0.910 23 H 0.044 0.956 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.162 0.838 31 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 14.754 3.109 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.246 5.246 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.153 4.153 6 C 0.069 3.931 7 H 0.089 0.911 8 C -0.141 4.141 9 N -0.160 5.160 10 C -0.394 4.394 11 C 0.081 3.919 12 C -0.546 4.546 13 H 0.083 0.917 14 C -0.184 4.184 15 N -0.429 5.429 16 Si 0.926 3.074 17 H -0.181 1.181 18 H -0.200 1.200 19 H -0.188 1.188 20 O -0.147 6.147 21 H 0.054 0.946 22 H 0.108 0.892 23 H 0.063 0.937 24 H 0.115 0.885 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.179 0.821 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.115 13.752 5.319 14.746 hybrid contribution -0.304 0.285 -3.261 3.287 sum -0.189 14.038 2.059 14.189 Atomic orbital electron populations 1.22456 0.87292 1.00732 1.02331 1.65021 1.08943 1.16753 1.33897 1.23245 0.95460 0.87795 1.02667 1.22286 0.96594 0.96312 0.99752 1.22353 0.93289 0.97995 1.01668 1.20560 0.98377 0.81359 0.92813 0.91069 1.25554 1.10909 0.94746 0.82894 1.69410 1.15591 1.03763 1.27203 1.23098 1.24493 0.93906 0.97892 1.20916 0.95259 0.82268 0.93429 1.19580 1.48168 0.91231 0.95589 0.91680 1.28094 0.89510 0.89365 1.11418 1.70607 1.32037 1.26974 1.13250 0.83200 0.79114 0.76719 0.68390 1.18112 1.19986 1.18836 1.84392 1.70208 1.16838 1.43244 0.94637 0.89158 0.93710 0.88509 0.91823 0.90682 0.88159 0.92896 0.89393 0.82091 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.45 127.69 1.21 1.79 16 2 N -0.52 -16.61 5.31 -886.70 -4.71 -21.31 16 3 C 0.04 0.76 6.50 86.43 0.56 1.32 16 4 C -0.11 -2.34 7.00 31.49 0.22 -2.12 16 5 C -0.11 -3.34 6.54 31.49 0.21 -3.14 16 6 C 0.18 6.37 2.82 44.31 0.12 6.50 16 7 H 0.07 2.35 7.97 -2.39 -0.02 2.34 16 8 C 0.06 3.02 6.80 88.26 0.60 3.62 16 9 N -0.43 -22.69 11.20 -300.13 -3.36 -26.05 16 10 C -0.25 -13.79 9.33 84.75 0.79 -13.00 16 11 C 0.13 7.67 6.63 22.94 0.15 7.82 16 12 C -0.52 -29.56 9.81 23.13 0.23 -29.34 16 13 H 0.06 3.84 8.06 -2.91 -0.02 3.81 16 14 C 0.03 1.85 5.51 85.32 0.47 2.32 16 15 N -0.81 -42.78 13.65 21.87 0.30 -42.48 16 16 Si 1.11 49.76 24.94 68.60 1.71 51.47 16 17 H -0.26 -10.82 6.61 99.48 0.66 -10.16 16 18 H -0.27 -12.98 6.69 99.48 0.67 -12.32 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 20 O -0.25 -13.87 10.81 -11.80 -0.13 -13.99 16 21 H 0.03 1.25 7.96 -2.39 -0.02 1.23 16 22 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.04 1.08 7.98 -2.39 -0.02 1.07 16 24 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 1.13 7.91 -2.39 -0.02 1.11 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.05 1.84 7.85 -2.39 -0.02 1.82 16 29 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.16 8.37 4.32 -2.91 -0.01 8.36 16 31 H 0.29 14.92 8.73 -92.71 -0.81 14.12 16 Total: -1.00 -65.51 258.19 -0.63 -66.15 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.99 Total: 10.44 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.56 Total: -24.22 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -7.77 Total: -89.84 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.13 Total: -13.99 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 1.71 Total: 51.47 kcal Total: -65.51 -0.63 -66.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972312.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.763 kcal (2) G-P(sol) polarization free energy of solvation -65.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds