Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.68643 * 2 1 4 4 C 1.54337 * 110.77179 * 236.73000 * 2 1 3 5 5 C 1.51324 * 105.22062 * 215.16804 * 4 2 1 6 6 N 1.31042 * 142.35351 * 197.66600 * 5 4 2 7 7 N 1.40026 * 108.24495 * 180.02562 * 6 5 4 8 8 C 1.46493 * 126.03174 * 179.81647 * 7 6 5 9 9 C 1.34891 * 107.93345 * 359.55436 * 7 6 5 10 10 C 1.35457 * 107.77376 * 0.26182 * 9 7 6 11 11 C 1.51285 * 142.52988 * 180.02562 * 10 9 7 12 12 O 1.42895 * 110.29588 * 281.69339 * 11 10 9 13 13 C 1.50696 * 110.29439 * 43.82404 * 11 10 9 14 14 H 1.08001 * 120.00121 * 33.79595 * 13 11 10 15 15 C 1.37874 * 120.00153 * 213.79749 * 13 11 10 16 16 N 1.31514 * 120.00276 * 180.46418 * 15 13 11 17 17 Si 1.86806 * 119.99773 * 0.46538 * 15 13 11 18 18 H 1.48500 * 109.47178 * 84.44887 * 17 15 13 19 19 H 1.48498 * 109.46861 * 204.44401 * 17 15 13 20 20 H 1.48494 * 109.47098 * 324.44304 * 17 15 13 21 21 H 1.09001 * 109.47190 * 188.96074 * 1 2 3 22 22 H 1.09004 * 109.47209 * 308.96110 * 1 2 3 23 23 H 1.09000 * 109.46971 * 68.96093 * 1 2 3 24 24 H 1.08997 * 110.29712 * 96.22805 * 4 2 1 25 25 H 1.09008 * 110.29341 * 334.10274 * 4 2 1 26 26 H 1.09000 * 109.47170 * 269.68946 * 8 7 6 27 27 H 1.09006 * 109.47484 * 29.69013 * 8 7 6 28 28 H 1.09000 * 109.47052 * 149.69016 * 8 7 6 29 29 H 1.08001 * 126.11067 * 180.24012 * 9 7 6 30 30 H 0.96691 * 114.00281 * 62.54129 * 12 11 10 31 31 H 0.97003 * 120.00360 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0774 -0.7916 -1.2065 5 6 3.3343 -1.4664 -0.7018 6 7 4.4349 -2.0486 -1.1102 7 7 5.1634 -2.4487 0.0167 8 6 6.4544 -3.1410 0.0070 9 6 4.4694 -2.0790 1.1127 10 6 3.3337 -1.4691 0.6967 11 6 2.0773 -0.7961 1.2038 12 8 1.1253 -1.7755 1.6239 13 6 2.4064 0.1360 2.3413 14 1 3.3466 0.6675 2.3492 15 6 1.5073 0.3104 3.3719 16 7 1.7905 1.1308 4.3600 17 14 -0.1133 -0.6187 3.3647 18 1 0.0888 -1.9710 3.9441 19 1 -1.1125 0.1227 4.1754 20 1 -0.6045 -0.7464 1.9692 21 1 -0.3633 -1.0151 0.1601 22 1 -0.3634 0.6462 0.7991 23 1 -0.3633 0.3689 -0.9592 24 1 2.3151 -0.1143 -2.0267 25 1 1.3515 -1.5379 -1.5298 26 1 6.2890 -4.2184 0.0027 27 1 7.0132 -2.8556 -0.8843 28 1 7.0218 -2.8641 0.8956 29 1 4.7660 -2.2408 2.1385 30 1 1.4249 -2.3241 2.3615 31 1 1.1578 1.2538 5.0849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260979224.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = 51.111559 kcal Electronic energy + Delta-G solvation = -15756.365696 eV Core-core repulsion = 13233.521378 eV Total energy + Delta-G solvation = -2522.844319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91827 -37.57579 -34.17878 -32.21631 -31.95827 -29.66013 -28.04602 -26.93575 -24.50683 -23.01664 -20.08180 -19.17639 -18.84346 -17.38705 -16.08006 -15.24945 -15.06072 -14.74738 -14.26961 -13.71861 -13.33246 -12.77282 -12.56882 -12.45756 -11.80001 -11.74738 -11.54861 -11.41011 -10.97800 -10.61559 -10.26142 -10.09861 -9.98836 -9.67232 -8.99988 -8.63228 -8.44130 -7.98700 -7.65480 -6.04360 -4.14668 2.43502 2.92643 3.40672 3.49269 3.67312 3.86883 4.56638 4.62069 5.13627 5.24842 5.29204 5.43222 5.49705 5.52975 5.65041 5.82250 6.08070 6.21055 6.25617 6.46093 6.60204 6.61652 6.75235 7.00979 7.13290 7.21851 7.38683 7.60860 7.65587 8.23176 8.32165 8.75018 8.95338 9.56596 11.05008 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033972 B = 0.011663 C = 0.009872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.998799 B = 2400.274472 C = 2835.699701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 H 0.088 0.912 4 C -0.027 4.027 5 C 0.050 3.950 6 N -0.300 5.300 7 N -0.390 5.390 8 C 0.111 3.889 9 C 0.068 3.932 10 C -0.241 4.241 11 C 0.297 3.703 12 O -0.550 6.550 13 C -0.545 4.545 14 H 0.076 0.924 15 C 0.063 3.937 16 N -0.898 5.898 17 Si 0.930 3.070 18 H -0.306 1.306 19 H -0.337 1.337 20 H -0.231 1.231 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.169 0.831 30 H 0.365 0.635 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -6.891 -7.271 10.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 H 0.106 0.894 4 C -0.067 4.067 5 C -0.117 4.117 6 N -0.122 5.122 7 N -0.173 5.173 8 C -0.031 4.031 9 C -0.075 4.075 10 C -0.253 4.253 11 C 0.256 3.744 12 O -0.358 6.358 13 C -0.582 4.582 14 H 0.094 0.906 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.768 3.232 18 H -0.235 1.235 19 H -0.270 1.270 20 H -0.156 1.156 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.186 0.814 30 H 0.213 0.787 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.693 -6.981 -8.595 11.672 hybrid contribution -0.434 -0.498 1.521 1.658 sum 3.259 -7.478 -7.074 10.798 Atomic orbital electron populations 1.21840 0.94548 1.02584 0.99707 1.22042 0.95903 0.98855 0.92018 0.89401 1.20716 0.89686 0.97658 0.98616 1.23280 0.94700 0.97559 0.96166 1.76902 1.06493 1.21352 1.07468 1.48514 1.17996 1.47370 1.03458 1.21660 0.81308 0.96286 1.03845 1.21607 0.93099 1.00225 0.92608 1.21954 1.00326 1.08385 0.94606 1.18073 0.79334 0.84195 0.92757 1.86354 1.44258 1.50771 1.54402 1.21310 1.05658 1.26681 1.04586 0.90613 1.25240 0.99324 0.94821 0.94613 1.69975 1.36805 1.36072 1.10531 0.86123 0.81916 0.76501 0.78646 1.23494 1.27000 1.15608 0.91412 0.92134 0.94408 0.91288 0.90158 0.91547 0.89945 0.89914 0.81355 0.78663 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.48 37.16 0.28 -2.19 16 2 C -0.07 -1.41 3.12 -89.21 -0.28 -1.69 16 3 H 0.09 1.87 7.91 -51.93 -0.41 1.46 16 4 C -0.03 -0.50 6.31 -26.88 -0.17 -0.67 16 5 C 0.05 1.03 8.10 -82.02 -0.66 0.37 16 6 N -0.30 -6.04 12.58 33.86 0.43 -5.61 16 7 N -0.39 -6.87 4.01 -68.14 -0.27 -7.14 16 8 C 0.11 1.28 11.47 59.84 0.69 1.97 16 9 C 0.07 1.31 11.49 -17.20 -0.20 1.11 16 10 C -0.24 -5.22 5.83 -104.73 -0.61 -5.83 16 11 C 0.30 6.77 0.79 -91.93 -0.07 6.70 16 12 O -0.55 -12.08 6.80 -35.23 -0.24 -12.32 16 13 C -0.54 -14.74 8.77 -34.44 -0.30 -15.04 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 15 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 16 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 17 Si 0.93 22.51 23.38 -169.99 -3.97 18.53 16 18 H -0.31 -7.25 6.91 56.52 0.39 -6.86 16 19 H -0.34 -8.64 7.11 56.52 0.40 -8.24 16 20 H -0.23 -5.18 3.14 56.52 0.18 -5.00 16 21 H 0.07 1.32 6.16 -51.93 -0.32 1.00 16 22 H 0.06 1.23 6.42 -51.93 -0.33 0.90 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.08 1.37 7.90 -51.92 -0.41 0.96 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 30 H 0.36 7.58 7.49 45.56 0.34 7.92 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 247.72 15.07 3.73 3.73 Total: -1.00 -32.75 247.72 -4.44 -37.19 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -3.46 Total: 5.50 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.43 Total: -13.61 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.93 Total: -39.02 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.24 Total: -12.32 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -3.97 Total: 18.53 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.75 -4.44 -37.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979224.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.303 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds