Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.68643 * 2 1 4 4 C 1.54337 * 110.77179 * 236.73000 * 2 1 3 5 5 C 1.51324 * 105.22062 * 215.16804 * 4 2 1 6 6 N 1.31042 * 142.35351 * 197.66600 * 5 4 2 7 7 N 1.40026 * 108.24495 * 180.02562 * 6 5 4 8 8 C 1.46493 * 126.03174 * 179.81647 * 7 6 5 9 9 C 1.34891 * 107.93345 * 359.55436 * 7 6 5 10 10 C 1.35457 * 107.77376 * 0.26182 * 9 7 6 11 11 C 1.51285 * 142.52988 * 180.02562 * 10 9 7 12 12 O 1.42895 * 110.29588 * 281.69339 * 11 10 9 13 13 C 1.50696 * 110.29439 * 43.82404 * 11 10 9 14 14 H 1.08001 * 120.00121 * 33.79595 * 13 11 10 15 15 C 1.37874 * 120.00153 * 213.79749 * 13 11 10 16 16 N 1.31514 * 120.00276 * 180.46418 * 15 13 11 17 17 Si 1.86806 * 119.99773 * 0.46538 * 15 13 11 18 18 H 1.48500 * 109.47178 * 84.44887 * 17 15 13 19 19 H 1.48498 * 109.46861 * 204.44401 * 17 15 13 20 20 H 1.48494 * 109.47098 * 324.44304 * 17 15 13 21 21 H 1.09001 * 109.47190 * 188.96074 * 1 2 3 22 22 H 1.09004 * 109.47209 * 308.96110 * 1 2 3 23 23 H 1.09000 * 109.46971 * 68.96093 * 1 2 3 24 24 H 1.08997 * 110.29712 * 96.22805 * 4 2 1 25 25 H 1.09008 * 110.29341 * 334.10274 * 4 2 1 26 26 H 1.09000 * 109.47170 * 269.68946 * 8 7 6 27 27 H 1.09006 * 109.47484 * 29.69013 * 8 7 6 28 28 H 1.09000 * 109.47052 * 149.69016 * 8 7 6 29 29 H 1.08001 * 126.11067 * 180.24012 * 9 7 6 30 30 H 0.96691 * 114.00281 * 62.54129 * 12 11 10 31 31 H 0.97003 * 120.00360 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0774 -0.7916 -1.2065 5 6 3.3343 -1.4664 -0.7018 6 7 4.4349 -2.0486 -1.1102 7 7 5.1634 -2.4487 0.0167 8 6 6.4544 -3.1410 0.0070 9 6 4.4694 -2.0790 1.1127 10 6 3.3337 -1.4691 0.6967 11 6 2.0773 -0.7961 1.2038 12 8 1.1253 -1.7755 1.6239 13 6 2.4064 0.1360 2.3413 14 1 3.3466 0.6675 2.3492 15 6 1.5073 0.3104 3.3719 16 7 1.7905 1.1308 4.3600 17 14 -0.1133 -0.6187 3.3647 18 1 0.0888 -1.9710 3.9441 19 1 -1.1125 0.1227 4.1754 20 1 -0.6045 -0.7464 1.9692 21 1 -0.3633 -1.0151 0.1601 22 1 -0.3634 0.6462 0.7991 23 1 -0.3633 0.3689 -0.9592 24 1 2.3151 -0.1143 -2.0267 25 1 1.3515 -1.5379 -1.5298 26 1 6.2890 -4.2184 0.0027 27 1 7.0132 -2.8556 -0.8843 28 1 7.0218 -2.8641 0.8956 29 1 4.7660 -2.2408 2.1385 30 1 1.4249 -2.3241 2.3615 31 1 1.1578 1.2538 5.0849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260979224.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = 26.540469 kcal Electronic energy + Delta-G solvation = -15757.431179 eV Core-core repulsion = 13233.521378 eV Total energy + Delta-G solvation = -2523.909801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.41602 -39.22381 -35.77271 -34.31568 -33.35154 -31.22602 -29.39135 -28.79280 -25.90586 -24.78056 -21.57477 -20.75775 -20.43438 -19.29897 -17.69029 -17.17415 -16.52744 -16.23692 -15.81922 -15.19462 -14.90614 -14.45915 -14.11156 -13.77331 -13.53877 -13.20026 -13.10119 -12.90055 -12.56509 -12.38504 -12.10973 -11.76449 -11.67661 -11.28769 -11.02698 -10.42244 -10.07857 -9.80412 -9.17962 -8.22754 -6.35649 0.96430 1.53320 1.66261 1.66611 1.85229 1.95788 2.56987 3.12258 3.15468 3.76018 3.97531 4.20034 4.22634 4.30875 4.45203 4.57791 4.66520 4.76457 4.80197 4.93445 5.10288 5.14693 5.16034 5.41344 5.55363 5.62744 5.76872 5.78767 6.14396 6.25284 6.67907 6.82849 6.93940 7.41192 8.90224 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033972 B = 0.011663 C = 0.009872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.998799 B = 2400.274472 C = 2835.699701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 H 0.070 0.930 4 C -0.019 4.019 5 C 0.038 3.962 6 N -0.316 5.316 7 N -0.381 5.381 8 C 0.098 3.902 9 C 0.071 3.929 10 C -0.284 4.284 11 C 0.298 3.702 12 O -0.546 6.546 13 C -0.537 4.537 14 H 0.028 0.972 15 C 0.010 3.990 16 N -0.950 5.950 17 Si 0.989 3.011 18 H -0.294 1.294 19 H -0.358 1.358 20 H -0.201 1.201 21 H 0.067 0.933 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.187 0.813 30 H 0.370 0.630 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -8.721 -8.980 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 H 0.088 0.912 4 C -0.058 4.058 5 C -0.128 4.128 6 N -0.139 5.139 7 N -0.164 5.164 8 C -0.042 4.042 9 C -0.075 4.075 10 C -0.296 4.296 11 C 0.257 3.743 12 O -0.354 6.354 13 C -0.575 4.575 14 H 0.047 0.953 15 C -0.187 4.187 16 N -0.588 5.588 17 Si 0.825 3.175 18 H -0.222 1.222 19 H -0.293 1.293 20 H -0.125 1.125 21 H 0.086 0.914 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.204 0.796 30 H 0.219 0.781 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.540 -8.843 -10.350 14.066 hybrid contribution -0.159 0.070 2.065 2.073 sum 3.382 -8.773 -8.284 12.531 Atomic orbital electron populations 1.21800 0.93139 1.02277 1.01185 1.21951 0.97112 0.97907 0.92093 0.91154 1.20688 0.89148 0.98045 0.97920 1.23597 0.95497 0.97942 0.95763 1.76826 1.06557 1.21786 1.08731 1.48929 1.18953 1.46187 1.02308 1.22158 0.79077 0.97183 1.05756 1.21935 0.92624 0.99108 0.93828 1.21970 1.01179 1.10854 0.95602 1.17963 0.80736 0.83781 0.91814 1.86303 1.44139 1.50425 1.54565 1.21497 1.03451 1.26470 1.06062 0.95332 1.26078 1.02832 0.95638 0.94141 1.70123 1.38216 1.38699 1.11805 0.85181 0.77459 0.75168 0.79724 1.22204 1.29325 1.12501 0.91407 0.94000 0.90689 0.89045 0.88305 0.89276 0.88763 0.87385 0.79606 0.78108 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.48 71.98 0.54 -3.94 16 2 C -0.07 -2.81 3.12 -9.88 -0.03 -2.84 16 3 H 0.07 2.99 7.91 -2.39 -0.02 2.97 16 4 C -0.02 -0.64 6.31 30.50 0.19 -0.45 16 5 C 0.04 1.50 8.10 43.26 0.35 1.85 16 6 N -0.32 -12.05 12.58 -46.80 -0.59 -12.64 16 7 N -0.38 -12.52 4.01 -369.50 -1.48 -14.00 16 8 C 0.10 1.94 11.47 127.77 1.47 3.40 16 9 C 0.07 2.61 11.49 83.58 0.96 3.57 16 10 C -0.28 -12.03 5.83 -19.93 -0.12 -12.15 16 11 C 0.30 13.37 0.79 -11.64 -0.01 13.36 16 12 O -0.55 -22.92 6.80 -148.98 -1.01 -23.93 16 13 C -0.54 -29.76 8.77 25.60 0.22 -29.53 16 14 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 15 C 0.01 0.59 5.47 84.65 0.46 1.05 16 16 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 17 Si 0.99 46.49 23.38 68.60 1.60 48.09 16 18 H -0.29 -13.12 6.91 99.48 0.69 -12.43 16 19 H -0.36 -18.08 7.11 99.48 0.71 -17.37 16 20 H -0.20 -8.44 3.14 99.48 0.31 -8.13 16 21 H 0.07 2.39 6.16 -2.39 -0.01 2.38 16 22 H 0.04 1.61 6.42 -2.39 -0.02 1.60 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.10 3.01 7.90 -2.38 -0.02 2.99 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.19 5.98 8.06 -2.91 -0.02 5.96 16 30 H 0.37 14.66 7.49 -74.06 -0.55 14.10 16 31 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.10 247.72 3.03 -69.07 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.17 Total: 18.03 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.04 Total: -25.67 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -1.77 Total: -85.60 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -1.01 Total: -23.93 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.60 Total: 48.09 kcal Total: -72.10 3.03 -69.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979224.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.615 kcal (2) G-P(sol) polarization free energy of solvation -72.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds