Wall clock time and date at job start Mon Mar 30 2020 02:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.81911 * 2 1 4 4 C 1.54434 * 110.93161 * 236.32098 * 2 1 3 5 5 C 1.51324 * 104.99211 * 267.53992 * 4 2 1 6 6 C 1.35136 * 110.30784 * 343.07637 * 5 4 2 7 7 C 1.40166 * 107.86432 * 179.97438 * 6 5 4 8 8 N 1.30740 * 108.23817 * 0.02562 * 7 6 5 9 9 N 1.35224 * 141.94534 * 163.06558 * 5 4 2 10 10 C 1.46499 * 126.03370 * 0.02562 * 9 5 4 11 11 C 1.51366 * 110.24562 * 359.97438 * 6 5 4 12 12 O 1.42898 * 110.33368 * 135.81368 * 11 6 5 13 13 C 1.50702 * 110.33160 * 258.05273 * 11 6 5 14 14 H 1.07998 * 120.00015 * 20.83861 * 13 11 6 15 15 C 1.37872 * 119.99585 * 200.83584 * 13 11 6 16 16 N 1.31518 * 119.99954 * 172.61453 * 15 13 11 17 17 Si 1.86796 * 120.00405 * 352.61791 * 15 13 11 18 18 H 1.48504 * 109.47127 * 84.91410 * 17 15 13 19 19 H 1.48500 * 109.47570 * 204.91303 * 17 15 13 20 20 H 1.48499 * 109.47319 * 324.91539 * 17 15 13 21 21 H 1.08999 * 109.46735 * 182.22352 * 1 2 3 22 22 H 1.09000 * 109.47094 * 302.22587 * 1 2 3 23 23 H 1.09002 * 109.47156 * 62.22885 * 1 2 3 24 24 H 1.09005 * 110.33508 * 26.41494 * 4 2 1 25 25 H 1.08995 * 110.34261 * 148.66068 * 4 2 1 26 26 H 1.08003 * 125.88531 * 180.02562 * 7 6 5 27 27 H 1.09002 * 109.46706 * 89.99268 * 10 9 5 28 28 H 1.08997 * 109.46948 * 209.99099 * 10 9 5 29 29 H 1.08997 * 109.46848 * 329.99328 * 10 9 5 30 30 H 0.96706 * 113.99446 * 59.17686 * 12 11 6 31 31 H 0.96998 * 120.00167 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0817 -0.7999 -1.2003 5 6 2.2801 -2.2055 -0.6761 6 6 2.2801 -2.2064 0.6753 7 6 2.4660 -3.5277 1.1044 8 7 2.5740 -4.2898 0.0475 9 7 2.4601 -3.4804 -1.0891 10 6 2.5248 -3.9346 -2.4804 11 6 2.0821 -0.8005 1.2000 12 8 1.1386 -0.7993 2.2733 13 6 3.3967 -0.2218 1.6562 14 1 4.3247 -0.6346 1.2891 15 6 3.4145 0.8346 2.5419 16 7 4.5548 1.2455 3.0524 17 14 1.8192 1.6821 3.0172 18 1 1.1778 0.9405 4.1325 19 1 2.1073 3.0734 3.4490 20 1 0.9040 1.7062 1.8479 21 1 -0.3633 -1.0269 0.0399 22 1 -0.3633 0.5480 0.8694 23 1 -0.3633 0.4788 -0.9093 24 1 1.3620 -0.7990 -2.0190 25 1 3.0323 -0.3809 -1.5301 26 1 2.5122 -3.8594 2.1312 27 1 3.5584 -3.9036 -2.8251 28 1 2.1501 -4.9560 -2.5470 29 1 1.9140 -3.2821 -3.1043 30 1 1.3956 -1.3530 3.0234 31 1 4.5673 1.9885 3.6759 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983150.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:57 Heat of formation + Delta-G solvation = 42.518780 kcal Electronic energy + Delta-G solvation = -15825.880459 eV Core-core repulsion = 13302.663530 eV Total energy + Delta-G solvation = -2523.216929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.00610 -37.34474 -33.98599 -32.64789 -32.18787 -29.53074 -27.46397 -25.93139 -25.73598 -22.84324 -20.32521 -19.11302 -18.97393 -17.16525 -16.27593 -15.27453 -14.87576 -14.55304 -13.74298 -13.52907 -13.13078 -12.85897 -12.50639 -12.40741 -12.22017 -11.80315 -11.62116 -11.26485 -10.85643 -10.78246 -10.48833 -10.31809 -10.06552 -9.74378 -9.15504 -8.67024 -8.56402 -8.39204 -7.46642 -6.07774 -4.17541 2.43298 2.88614 3.49899 3.54927 3.59605 3.74660 4.58395 4.81448 4.99703 5.22494 5.31376 5.35847 5.48446 5.53186 5.65042 5.83453 5.99319 6.07422 6.13058 6.36067 6.38848 6.49529 6.89897 6.93975 6.99660 7.26526 7.34192 7.60528 7.66879 8.28199 8.30695 8.81712 9.00199 9.55112 11.01670 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.011316 C = 0.010396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.170980 B = 2473.735949 C = 2692.697122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 H 0.090 0.910 4 C -0.028 4.028 5 C 0.042 3.958 6 C -0.231 4.231 7 C 0.069 3.931 8 N -0.309 5.309 9 N -0.371 5.371 10 C 0.108 3.892 11 C 0.299 3.701 12 O -0.565 6.565 13 C -0.543 4.543 14 H 0.074 0.926 15 C 0.075 3.925 16 N -0.893 5.893 17 Si 0.932 3.068 18 H -0.288 1.288 19 H -0.326 1.326 20 H -0.259 1.259 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.176 0.824 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.368 0.632 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -5.184 -8.421 11.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 H 0.108 0.892 4 C -0.068 4.068 5 C -0.084 4.084 6 C -0.242 4.242 7 C -0.116 4.116 8 N -0.130 5.130 9 N -0.155 5.155 10 C -0.035 4.035 11 C 0.259 3.741 12 O -0.371 6.371 13 C -0.581 4.581 14 H 0.092 0.908 15 C -0.129 4.129 16 N -0.530 5.530 17 Si 0.766 3.234 18 H -0.215 1.215 19 H -0.257 1.257 20 H -0.184 1.184 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.193 0.807 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.216 0.784 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.598 -5.929 -9.305 12.855 hybrid contribution -0.209 0.699 0.915 1.170 sum -6.807 -5.230 -8.390 12.003 Atomic orbital electron populations 1.21682 0.95526 1.01203 1.00476 1.22217 0.94668 0.99447 0.92971 0.89219 1.20736 1.01292 0.86578 0.98156 1.21704 1.02363 0.87908 0.96463 1.21935 1.11356 0.96825 0.94070 1.23196 0.99365 0.91232 0.97779 1.77232 1.26865 1.17990 0.90962 1.47788 1.58580 1.03568 1.05560 1.21677 1.02480 1.01475 0.77836 1.18212 0.87446 0.84862 0.83623 1.86121 1.50444 1.70452 1.30125 1.21252 0.91658 1.16989 1.28153 0.90817 1.25074 0.97201 0.96129 0.94523 1.69986 1.26425 1.26978 1.29563 0.86005 0.82643 0.75109 0.79674 1.21544 1.25672 1.18385 0.93349 0.91773 0.94402 0.91770 0.89718 0.80668 0.91550 0.90029 0.90206 0.78443 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.30 37.16 0.31 -2.09 16 2 C -0.07 -1.49 2.06 -89.11 -0.18 -1.67 16 3 H 0.09 1.92 7.09 -51.92 -0.37 1.55 16 4 C -0.03 -0.50 6.32 -26.82 -0.17 -0.67 16 5 C 0.04 0.82 7.58 -81.89 -0.62 0.20 16 6 C -0.23 -4.96 5.84 -104.68 -0.61 -5.57 16 7 C 0.07 1.38 12.03 -17.29 -0.21 1.18 16 8 N -0.31 -6.09 12.57 30.67 0.39 -5.71 16 9 N -0.37 -6.71 4.02 -63.64 -0.26 -6.96 16 10 C 0.11 1.32 11.47 59.85 0.69 2.01 16 11 C 0.30 6.80 0.59 -91.83 -0.05 6.75 16 12 O -0.56 -12.45 7.66 -35.23 -0.27 -12.72 16 13 C -0.54 -14.75 8.70 -34.44 -0.30 -15.05 16 14 H 0.07 2.25 8.05 -52.49 -0.42 1.83 16 15 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 16 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 17 Si 0.93 22.93 24.52 -169.99 -4.17 18.76 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.33 -8.27 7.11 56.52 0.40 -7.87 16 20 H -0.26 -6.02 4.48 56.52 0.25 -5.76 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.06 1.25 6.36 -51.93 -0.33 0.92 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 25 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.18 3.01 8.06 -52.48 -0.42 2.59 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.37 7.35 9.07 45.56 0.41 7.77 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 253.46 15.07 3.82 3.82 Total: -1.00 -32.64 253.46 -4.32 -36.96 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.36 Total: 4.87 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.25 Total: -12.93 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.90 Total: -38.77 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.27 Total: -12.72 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.17 Total: 18.76 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.64 -4.32 -36.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983150.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.483 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds