Wall clock time and date at job start Mon Mar 30 2020 02:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.81911 * 2 1 4 4 C 1.54434 * 110.93161 * 236.32098 * 2 1 3 5 5 C 1.51324 * 104.99211 * 267.53992 * 4 2 1 6 6 C 1.35136 * 110.30784 * 343.07637 * 5 4 2 7 7 C 1.40166 * 107.86432 * 179.97438 * 6 5 4 8 8 N 1.30740 * 108.23817 * 0.02562 * 7 6 5 9 9 N 1.35224 * 141.94534 * 163.06558 * 5 4 2 10 10 C 1.46499 * 126.03370 * 0.02562 * 9 5 4 11 11 C 1.51366 * 110.24562 * 359.97438 * 6 5 4 12 12 O 1.42898 * 110.33368 * 135.81368 * 11 6 5 13 13 C 1.50702 * 110.33160 * 258.05273 * 11 6 5 14 14 H 1.07998 * 120.00015 * 20.83861 * 13 11 6 15 15 C 1.37872 * 119.99585 * 200.83584 * 13 11 6 16 16 N 1.31518 * 119.99954 * 172.61453 * 15 13 11 17 17 Si 1.86796 * 120.00405 * 352.61791 * 15 13 11 18 18 H 1.48504 * 109.47127 * 84.91410 * 17 15 13 19 19 H 1.48500 * 109.47570 * 204.91303 * 17 15 13 20 20 H 1.48499 * 109.47319 * 324.91539 * 17 15 13 21 21 H 1.08999 * 109.46735 * 182.22352 * 1 2 3 22 22 H 1.09000 * 109.47094 * 302.22587 * 1 2 3 23 23 H 1.09002 * 109.47156 * 62.22885 * 1 2 3 24 24 H 1.09005 * 110.33508 * 26.41494 * 4 2 1 25 25 H 1.08995 * 110.34261 * 148.66068 * 4 2 1 26 26 H 1.08003 * 125.88531 * 180.02562 * 7 6 5 27 27 H 1.09002 * 109.46706 * 89.99268 * 10 9 5 28 28 H 1.08997 * 109.46948 * 209.99099 * 10 9 5 29 29 H 1.08997 * 109.46848 * 329.99328 * 10 9 5 30 30 H 0.96706 * 113.99446 * 59.17686 * 12 11 6 31 31 H 0.96998 * 120.00167 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0817 -0.7999 -1.2003 5 6 2.2801 -2.2055 -0.6761 6 6 2.2801 -2.2064 0.6753 7 6 2.4660 -3.5277 1.1044 8 7 2.5740 -4.2898 0.0475 9 7 2.4601 -3.4804 -1.0891 10 6 2.5248 -3.9346 -2.4804 11 6 2.0821 -0.8005 1.2000 12 8 1.1386 -0.7993 2.2733 13 6 3.3967 -0.2218 1.6562 14 1 4.3247 -0.6346 1.2891 15 6 3.4145 0.8346 2.5419 16 7 4.5548 1.2455 3.0524 17 14 1.8192 1.6821 3.0172 18 1 1.1778 0.9405 4.1325 19 1 2.1073 3.0734 3.4490 20 1 0.9040 1.7062 1.8479 21 1 -0.3633 -1.0269 0.0399 22 1 -0.3633 0.5480 0.8694 23 1 -0.3633 0.4788 -0.9093 24 1 1.3620 -0.7990 -2.0190 25 1 3.0323 -0.3809 -1.5301 26 1 2.5122 -3.8594 2.1312 27 1 3.5584 -3.9036 -2.8251 28 1 2.1501 -4.9560 -2.5470 29 1 1.9140 -3.2821 -3.1043 30 1 1.3956 -1.3530 3.0234 31 1 4.5673 1.9885 3.6759 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983150.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:57 Heat of formation + Delta-G solvation = 17.968741 kcal Electronic energy + Delta-G solvation = -15826.945029 eV Core-core repulsion = 13302.663530 eV Total energy + Delta-G solvation = -2524.281499 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.49902 -38.97949 -35.61203 -34.33733 -33.94889 -31.01118 -29.24319 -27.27388 -27.22494 -24.64688 -21.80814 -20.62194 -20.56064 -19.14003 -17.81188 -17.01352 -16.50716 -16.14685 -15.15498 -15.04323 -14.84275 -14.53315 -13.89448 -13.77178 -13.60778 -13.42053 -13.17970 -12.91894 -12.58567 -12.37426 -12.18095 -11.89008 -11.80121 -11.40313 -11.13982 -10.57752 -10.25909 -10.06894 -9.03404 -8.26644 -6.38602 0.96557 1.56211 1.56838 1.58980 1.77132 1.95743 2.51747 3.07004 3.49068 3.71436 3.88561 3.97995 4.31039 4.36746 4.43999 4.51131 4.64812 4.66413 4.74043 4.90304 4.94767 5.10751 5.34839 5.38960 5.49018 5.61521 5.73140 5.81182 6.17494 6.26574 6.67789 6.79732 7.10977 7.40812 8.86931 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.011316 C = 0.010396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.170980 B = 2473.735949 C = 2692.697122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 H 0.075 0.925 4 C -0.022 4.022 5 C 0.048 3.952 6 C -0.273 4.273 7 C 0.055 3.945 8 N -0.322 5.322 9 N -0.367 5.367 10 C 0.094 3.906 11 C 0.299 3.701 12 O -0.564 6.564 13 C -0.536 4.536 14 H 0.024 0.976 15 C 0.024 3.976 16 N -0.945 5.945 17 Si 0.992 3.008 18 H -0.285 1.285 19 H -0.337 1.337 20 H -0.235 1.235 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.191 0.809 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.374 0.626 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 -5.581 -10.438 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.061 4.061 5 C -0.080 4.080 6 C -0.284 4.284 7 C -0.129 4.129 8 N -0.144 5.144 9 N -0.150 5.150 10 C -0.046 4.046 11 C 0.258 3.742 12 O -0.372 6.372 13 C -0.573 4.573 14 H 0.043 0.957 15 C -0.174 4.174 16 N -0.584 5.584 17 Si 0.823 3.177 18 H -0.211 1.211 19 H -0.269 1.269 20 H -0.159 1.159 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.126 0.874 25 H 0.103 0.897 26 H 0.207 0.793 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.223 0.777 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.739 -6.370 -11.355 15.681 hybrid contribution 0.550 0.718 1.474 1.729 sum -8.189 -5.652 -9.881 14.023 Atomic orbital electron populations 1.21596 0.93401 1.01360 1.01632 1.22165 0.96433 0.98545 0.92659 0.90682 1.20754 1.02414 0.84744 0.98229 1.21985 1.00939 0.89030 0.96039 1.21946 1.14321 0.96676 0.95481 1.23491 0.99527 0.91030 0.98845 1.77177 1.27174 1.18543 0.91523 1.48222 1.56849 1.02925 1.07036 1.22166 1.04209 1.03139 0.75084 1.18104 0.85482 0.86147 0.84467 1.86078 1.49940 1.70697 1.30459 1.21459 0.92329 1.16258 1.27300 0.95737 1.25852 0.99987 0.96881 0.94697 1.70122 1.28803 1.28168 1.31270 0.85040 0.79229 0.73270 0.80123 1.21146 1.26909 1.15905 0.93409 0.93216 0.90855 0.87397 0.89706 0.79266 0.90252 0.88437 0.87165 0.77745 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.30 71.98 0.60 -3.40 16 2 C -0.08 -3.00 2.06 -9.81 -0.02 -3.02 16 3 H 0.07 3.07 7.09 -2.38 -0.02 3.05 16 4 C -0.02 -0.72 6.32 30.53 0.19 -0.53 16 5 C 0.05 1.78 7.58 41.52 0.31 2.09 16 6 C -0.27 -11.50 5.84 -19.90 -0.12 -11.62 16 7 C 0.06 2.18 12.03 85.32 1.03 3.21 16 8 N -0.32 -12.24 12.57 -56.88 -0.71 -12.96 16 9 N -0.37 -12.31 4.02 -355.27 -1.43 -13.74 16 10 C 0.09 1.96 11.47 127.77 1.47 3.42 16 11 C 0.30 13.38 0.59 -11.58 -0.01 13.37 16 12 O -0.56 -24.20 7.66 -148.98 -1.14 -25.34 16 13 C -0.54 -29.81 8.70 25.60 0.22 -29.59 16 14 H 0.02 1.57 8.05 -2.91 -0.02 1.54 16 15 C 0.02 1.39 5.46 84.65 0.46 1.85 16 16 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 17 Si 0.99 47.47 24.52 68.60 1.68 49.15 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.34 -16.68 7.11 99.48 0.71 -15.97 16 20 H -0.24 -10.26 4.48 99.48 0.45 -9.81 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.05 1.76 6.36 -2.39 -0.02 1.74 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.11 2.55 7.91 -2.38 -0.02 2.53 16 25 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.19 6.52 8.06 -2.91 -0.02 6.49 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.37 14.77 9.07 -74.05 -0.67 14.09 16 31 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -71.87 253.46 3.04 -68.83 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.20 Total: 16.78 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.14 Total: -24.21 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.84 Total: -85.21 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -1.14 Total: -25.34 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.68 Total: 49.15 kcal Total: -71.87 3.04 -68.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983150.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.804 kcal (2) G-P(sol) polarization free energy of solvation -71.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds