Wall clock time and date at job start Mon Mar 30 2020 03:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40070 * 126.03597 * 2 1 4 4 C 1.30837 * 108.34423 * 179.76481 * 3 2 1 5 5 C 1.50695 * 125.86110 * 180.23798 * 4 3 2 6 6 C 1.53007 * 117.49514 * 8.81297 * 5 4 3 7 7 C 1.52997 * 117.49682 * 300.19376 * 5 4 3 8 8 C 1.39820 * 108.27537 * 0.40302 * 4 3 2 9 9 C 1.50700 * 126.07570 * 179.85956 * 8 4 3 10 10 C 1.50702 * 109.46869 * 269.70926 * 9 8 4 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.35136 * 126.03940 * 180.02562 * 2 1 3 19 19 O 1.35756 * 126.19157 * 0.02562 * 18 2 1 20 20 H 1.09002 * 109.47155 * 269.97101 * 1 2 3 21 21 H 1.08996 * 109.47466 * 29.97523 * 1 2 3 22 22 H 1.09003 * 109.47047 * 149.97946 * 1 2 3 23 23 H 1.08995 * 115.55355 * 154.52126 * 5 4 3 24 24 H 1.08994 * 117.50345 * 0.02562 * 6 5 4 25 25 H 1.09005 * 117.49054 * 145.02377 * 6 5 4 26 26 H 1.09006 * 117.49982 * 214.97459 * 7 5 4 27 27 H 1.09002 * 117.50198 * 359.97438 * 7 5 4 28 28 H 1.09004 * 109.47210 * 149.71219 * 9 8 4 29 29 H 1.08994 * 109.47551 * 29.70871 * 9 8 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 0.96697 * 114.00620 * 269.96136 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1327 0.0000 4 6 3.5355 0.7351 0.0051 5 6 4.7476 1.6303 0.0120 6 6 4.5181 3.1285 0.2212 7 6 4.9157 2.6008 -1.1587 8 6 3.5497 -0.6631 -0.0008 9 6 4.7768 -1.5380 -0.0009 10 6 5.1858 -1.8294 -1.4217 11 1 4.6147 -1.4215 -2.2426 12 6 6.2929 -2.6117 -1.6738 13 7 6.9886 -3.1081 -0.6742 14 14 6.8044 -2.9665 -3.4349 15 1 7.1020 -1.6889 -4.1310 16 1 8.0163 -3.8248 -3.4350 17 1 5.7013 -3.6685 -4.1390 18 6 2.2600 -1.0927 -0.0005 19 8 1.8457 -2.3855 -0.0016 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 5.6513 1.1949 0.4385 24 1 3.4905 3.4666 0.3543 25 1 5.2709 3.6789 0.7856 26 1 5.9301 2.8042 -1.5022 27 1 4.1498 2.5915 -1.9342 28 1 4.5558 -2.4737 0.5128 29 1 5.5893 -1.0244 0.5130 30 1 7.7673 -3.6587 -0.8515 31 1 1.7259 -2.7610 0.8815 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260985792.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:52 Heat of formation + Delta-G solvation = 32.534382 kcal Electronic energy + Delta-G solvation = -15057.780506 eV Core-core repulsion = 12534.130620 eV Total energy + Delta-G solvation = -2523.649885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.31426 -38.52722 -37.46931 -35.51068 -33.87857 -31.70789 -28.88800 -27.46999 -24.89891 -23.75747 -23.17289 -21.68276 -20.29125 -18.71510 -18.43724 -17.38426 -16.67251 -16.51274 -15.95467 -15.29980 -14.85473 -14.59781 -14.31265 -13.63846 -13.47580 -13.36812 -13.04753 -12.80563 -12.58004 -12.42708 -12.29760 -11.65660 -11.58579 -11.51636 -11.50366 -10.96389 -10.50921 -9.79777 -9.06383 -8.10590 -6.21899 0.75360 1.39853 1.42798 1.48466 1.50449 1.73166 2.46281 3.10488 3.14831 3.18283 3.64741 3.87901 4.07095 4.25896 4.39961 4.42241 4.62385 4.64074 4.81905 4.88369 4.91735 5.08581 5.30322 5.34644 5.40392 5.69149 5.72871 5.81503 5.89913 6.31410 6.73489 6.81790 6.87175 7.44326 8.96822 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.010265 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.077511 B = 2727.143607 C = 3507.145990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.389 5.389 3 N -0.298 5.298 4 C 0.107 3.893 5 C -0.100 4.100 6 C -0.142 4.142 7 C -0.158 4.158 8 C -0.229 4.229 9 C 0.109 3.891 10 C -0.513 4.513 11 H 0.038 0.962 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.955 3.045 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.275 1.275 18 C 0.240 3.760 19 O -0.465 6.465 20 H 0.092 0.908 21 H 0.097 0.903 22 H 0.096 0.904 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.113 0.887 27 H 0.082 0.918 28 H -0.002 1.002 29 H 0.006 0.994 30 H 0.264 0.736 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 8.007 2.657 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.183 5.183 3 N -0.125 5.125 4 C -0.057 4.057 5 C -0.120 4.120 6 C -0.179 4.179 7 C -0.197 4.197 8 C -0.241 4.241 9 C 0.071 3.929 10 C -0.552 4.552 11 H 0.057 0.943 12 C -0.190 4.190 13 N -0.569 5.569 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.200 1.200 18 C 0.072 3.928 19 O -0.270 6.270 20 H 0.111 0.889 21 H 0.116 0.884 22 H 0.115 0.885 23 H 0.130 0.870 24 H 0.116 0.884 25 H 0.140 0.860 26 H 0.131 0.869 27 H 0.101 0.899 28 H 0.017 0.983 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -10.743 8.799 2.099 14.044 hybrid contribution 0.767 -1.554 -0.288 1.757 sum -9.976 7.244 1.810 12.461 Atomic orbital electron populations 1.22090 0.72169 1.05412 1.04648 1.49028 1.07699 1.02650 1.58897 1.77079 1.00820 1.06602 1.28018 1.21217 0.92710 0.92580 0.99162 1.20273 0.94314 0.90506 1.06948 1.23030 1.03474 0.92744 0.98622 1.22967 1.03275 1.01675 0.91734 1.20384 0.94942 0.94753 1.13976 1.17198 0.88600 0.91565 0.95542 1.21269 1.10897 1.30336 0.92664 0.94333 1.25777 0.96361 0.95675 1.01167 1.70052 1.18950 1.35330 1.32602 0.85653 0.77655 0.78432 0.80226 1.19354 1.20262 1.20027 1.18395 0.88520 0.81165 1.04745 1.84840 1.88322 1.18771 1.35042 0.88920 0.88399 0.88530 0.86991 0.88421 0.85967 0.86884 0.89907 0.98342 0.97573 0.92731 0.73214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.16 11.42 127.77 1.46 3.61 16 2 N -0.39 -13.75 4.02 -481.27 -1.93 -15.68 16 3 N -0.30 -11.63 12.14 -47.42 -0.58 -12.20 16 4 C 0.11 4.56 6.75 43.09 0.29 4.85 16 5 C -0.10 -3.75 6.01 -11.54 -0.07 -3.82 16 6 C -0.14 -3.97 10.14 30.60 0.31 -3.66 16 7 C -0.16 -5.02 10.23 30.59 0.31 -4.70 16 8 C -0.23 -10.89 5.31 -20.02 -0.11 -10.99 16 9 C 0.11 6.04 5.24 29.10 0.15 6.19 16 10 C -0.51 -30.59 9.09 25.60 0.23 -30.36 16 11 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 12 C 0.01 0.46 5.46 84.66 0.46 0.92 16 13 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 14 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 18 C 0.24 9.86 7.92 83.65 0.66 10.52 16 19 O -0.47 -16.87 13.53 -90.82 -1.23 -18.10 16 20 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.11 4.43 7.51 -2.39 -0.02 4.41 16 24 H 0.10 2.74 7.89 -2.39 -0.02 2.72 16 25 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 26 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 27 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.01 0.35 7.44 -2.39 -0.02 0.33 16 30 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 31 H 0.41 10.21 9.06 -74.06 -0.67 9.54 16 Total: -1.00 -73.16 276.35 2.75 -70.42 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.47 Total: 11.51 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 3.71 Total: -27.43 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.22 Total: -84.16 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -1.23 Total: -18.10 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.16 2.75 -70.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260985792.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.951 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds