Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 116.99667 * 2 1 4 4 N 1.32279 * 119.68869 * 0.24471 * 3 2 1 5 5 C 1.31929 * 121.65160 * 180.27549 * 4 3 2 6 6 C 1.38092 * 120.83175 * 359.47103 * 5 4 3 7 7 C 1.38786 * 119.28614 * 0.26528 * 6 5 4 8 8 C 1.38418 * 118.48602 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.44433 * 179.97438 * 8 7 6 10 10 H 1.08993 * 109.47205 * 219.99971 * 9 8 7 11 11 N 1.46905 * 109.46919 * 339.99926 * 9 8 7 12 12 C 1.53001 * 109.47357 * 99.99818 * 9 8 7 13 13 C 1.50700 * 109.47260 * 175.00122 * 12 9 8 14 14 H 1.08000 * 119.99751 * 359.97438 * 13 12 9 15 15 C 1.37875 * 119.99660 * 180.02562 * 13 12 9 16 16 N 1.31511 * 120.00583 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99622 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47171 * 89.99712 * 17 15 13 19 19 H 1.48505 * 109.47202 * 209.99695 * 17 15 13 20 20 H 1.48508 * 109.47181 * 329.99640 * 17 15 13 21 21 H 1.09002 * 109.47137 * 60.00823 * 1 2 3 22 22 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47403 * 300.00745 * 1 2 3 24 24 H 1.08002 * 119.58810 * 179.75897 * 5 4 3 25 25 H 1.07996 * 120.35616 * 180.27895 * 6 5 4 26 26 H 1.08003 * 120.75383 * 179.97438 * 7 6 5 27 27 H 1.00896 * 110.99874 * 60.00374 * 11 9 8 28 28 H 1.00897 * 110.99763 * 183.95162 * 11 9 8 29 29 H 1.09004 * 109.46947 * 295.00388 * 12 9 8 30 30 H 1.09006 * 109.46846 * 55.00102 * 12 9 8 31 31 H 0.97001 * 120.00128 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3184 2.3143 0.0049 5 6 1.8766 3.5097 -0.0003 6 6 3.2505 3.6492 -0.0002 7 6 4.0482 2.5135 -0.0001 8 6 3.4321 1.2740 0.0004 9 6 4.2557 0.0119 -0.0001 10 1 3.7946 -0.7226 -0.6603 11 7 5.6130 0.3132 -0.4748 12 6 4.3257 -0.5520 1.4204 13 6 5.0442 -1.8766 1.4003 14 1 5.4135 -2.2764 0.4675 15 6 5.2290 -2.5784 2.5725 16 7 4.7788 -2.0918 3.7084 17 14 6.1201 -4.2200 2.5476 18 1 7.5751 -3.9963 2.7431 19 1 5.6006 -5.0819 3.6397 20 1 5.8930 -4.8868 1.2403 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 1.2513 4.3903 0.0000 25 1 3.6993 4.6315 0.0001 26 1 5.1251 2.5951 -0.0005 27 1 6.0620 0.9922 0.1211 28 1 6.1661 -0.5277 -0.5456 29 1 4.8659 0.1446 2.0617 30 1 3.3158 -0.6922 1.8058 31 1 4.9092 -2.5855 4.5331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -9.547487 kcal Electronic energy + Delta-G solvation = -15054.601293 eV Core-core repulsion = 12529.126601 eV Total energy + Delta-G solvation = -2525.474692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.31134 -37.45750 -35.80430 -32.62909 -31.29856 -30.11239 -27.97865 -26.87115 -24.84696 -22.49022 -22.45767 -19.85038 -18.03840 -16.98886 -16.40372 -15.55408 -15.29247 -14.59270 -14.56589 -13.84465 -13.45585 -13.21137 -13.14671 -12.49756 -12.20674 -12.04102 -11.63027 -11.30489 -10.95420 -10.87106 -10.66873 -10.28415 -9.99318 -9.37114 -9.28064 -9.05739 -8.44179 -8.11058 -7.61921 -6.04902 -4.08935 1.56453 1.68533 3.28320 3.35283 3.38570 3.54393 4.16701 4.41334 4.63224 5.21245 5.21961 5.31811 5.42488 5.55061 5.58943 5.67472 5.72489 5.89217 5.98893 6.31284 6.51942 6.69629 6.76251 6.87686 7.52096 7.59558 7.67834 7.88532 8.05242 8.18683 8.23191 8.35553 8.97506 9.55536 11.05896 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033839 B = 0.007995 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.238735 B = 3501.344072 C = 3917.581348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.293 6.293 3 C 0.319 3.681 4 N -0.544 5.544 5 C 0.114 3.886 6 C -0.213 4.213 7 C -0.040 4.040 8 C -0.117 4.117 9 C 0.137 3.863 10 H 0.084 0.916 11 N -0.842 5.842 12 C 0.005 3.995 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.052 0.948 22 H 0.093 0.907 23 H 0.055 0.945 24 H 0.151 0.849 25 H 0.130 0.870 26 H 0.140 0.860 27 H 0.327 0.673 28 H 0.349 0.651 29 H 0.013 0.987 30 H 0.024 0.976 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 8.541 -6.712 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.199 6.199 3 C 0.140 3.860 4 N -0.268 5.268 5 C -0.041 4.041 6 C -0.233 4.233 7 C -0.065 4.065 8 C -0.121 4.121 9 C 0.025 3.975 10 H 0.101 0.899 11 N -0.371 5.371 12 C -0.034 4.034 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.071 0.929 22 H 0.111 0.889 23 H 0.073 0.927 24 H 0.168 0.832 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.139 0.861 28 H 0.162 0.838 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.546 8.396 -7.188 12.365 hybrid contribution 1.348 -1.047 1.176 2.073 sum -4.198 7.348 -6.012 10.381 Atomic orbital electron populations 1.22781 0.78241 1.02617 1.01701 1.86383 1.21940 1.24142 1.87466 1.19647 0.88988 0.84542 0.92871 1.67248 1.40939 0.98823 1.19774 1.22179 0.92837 0.93447 0.95629 1.21890 0.94922 0.99456 1.07081 1.21239 1.00730 0.90598 0.93957 1.20252 0.91138 0.97571 1.03096 1.20317 0.87750 0.90626 0.98808 0.89852 1.59296 1.04441 1.17323 1.56006 1.19738 0.98044 0.95682 0.89907 1.21145 1.36830 1.04569 0.93511 0.92512 1.25012 0.95721 0.97910 0.95596 1.69975 1.45973 1.38699 0.98379 0.86587 0.79761 0.83828 0.77779 1.20689 1.21241 1.19786 0.92922 0.88906 0.92670 0.83171 0.85201 0.84208 0.86134 0.83773 0.96843 0.95785 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 101.05 1.05 1.68 16 2 O -0.29 -5.76 9.65 -18.73 -0.18 -5.95 16 3 C 0.32 6.23 7.47 -17.12 -0.13 6.11 16 4 N -0.54 -9.52 9.22 -13.33 -0.12 -9.65 16 5 C 0.11 1.66 11.18 -17.56 -0.20 1.47 16 6 C -0.21 -2.99 10.11 -39.43 -0.40 -3.39 16 7 C -0.04 -0.66 9.35 -39.31 -0.37 -1.02 16 8 C -0.12 -2.29 5.11 -104.32 -0.53 -2.83 16 9 C 0.14 2.92 2.66 -68.86 -0.18 2.74 16 10 H 0.08 1.89 7.87 -51.93 -0.41 1.48 16 11 N -0.84 -15.73 8.69 -5.65 -0.05 -15.78 16 12 C 0.00 0.12 4.60 -27.88 -0.13 -0.01 16 13 C -0.52 -14.37 8.55 -34.44 -0.29 -14.66 16 14 H 0.06 1.50 7.15 -52.49 -0.38 1.13 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 22 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 24 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 25 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 26 H 0.14 2.07 6.37 -52.48 -0.33 1.73 16 27 H 0.33 5.70 7.35 -39.29 -0.29 5.42 16 28 H 0.35 6.63 7.90 -39.29 -0.31 6.32 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 268.19 15.07 4.04 4.04 Total: -1.00 -31.34 268.19 -5.68 -37.02 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -3.80 Total: 8.20 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.28 Total: -8.34 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.56 Total: -51.38 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.18 Total: -5.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.34 -5.68 -37.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.471 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds