Wall clock time and date at job start Mon Mar 30 2020 03:06:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 N 1.40214 * 126.16996 * 2 1
4 4 C 1.30736 * 109.10728 * 179.97438 * 3 2 1
5 5 C 1.39307 * 108.90893 * 0.09241 * 4 3 2
6 6 C 1.37682 * 126.17376 * 180.02562 * 2 1 3
7 7 C 1.40237 * 126.73511 * 359.94155 * 6 2 1
8 8 H 1.08004 * 119.99681 * 134.23922 * 7 6 2
9 9 C 1.40165 * 120.00275 * 314.24096 * 7 6 2
10 10 N 1.30760 * 120.00140 * 153.49089 * 9 7 6
11 11 Si 1.86799 * 119.99904 * 333.48968 * 9 7 6
12 12 H 1.48504 * 109.46944 * 95.54097 * 11 9 7
13 13 H 1.48493 * 109.47364 * 215.54125 * 11 9 7
14 14 H 1.48501 * 109.47138 * 335.54652 * 11 9 7
15 15 C 1.50795 * 123.99650 * 179.87342 * 5 4 3
16 16 H 1.09003 * 109.70920 * 223.88707 * 15 5 4
17 17 O 1.42897 * 109.70915 * 103.30115 * 15 5 4
18 18 C 1.53392 * 108.23286 * 343.61206 * 15 5 4
19 19 C 1.53023 * 109.62114 * 50.20640 * 18 15 5
20 20 C 1.51086 * 127.71898 * 180.27171 * 4 3 2
21 21 H 1.09003 * 109.46592 * 83.92419 * 1 2 3
22 22 H 1.09005 * 109.47037 * 203.91786 * 1 2 3
23 23 H 1.08996 * 109.47262 * 323.92263 * 1 2 3
24 24 H 0.97001 * 120.00212 * 180.02562 * 10 9 7
25 25 H 0.96706 * 113.99739 * 179.97438 * 17 15 5
26 26 H 1.09005 * 109.44558 * 170.25766 * 18 15 5
27 27 H 1.09001 * 109.45068 * 290.16635 * 18 15 5
28 28 H 1.09003 * 109.43463 * 168.53063 * 19 18 15
29 29 H 1.08993 * 109.41881 * 48.69152 * 19 18 15
30 30 H 1.08996 * 109.70359 * 282.74198 * 20 4 3
31 31 H 1.09001 * 109.70011 * 43.31157 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2925 1.1319 0.0000
4 6 3.5423 0.7483 0.0006
5 6 3.5872 -0.6440 -0.0012
6 6 2.2777 -1.1114 -0.0005
7 6 1.8655 -2.4519 0.0001
8 1 2.3300 -3.1599 -0.6704
9 6 0.8508 -2.8728 0.8706
10 7 0.1107 -3.9055 0.5613
11 14 0.5556 -1.9584 2.4725
12 1 -0.5268 -0.9600 2.2804
13 1 0.1567 -2.9242 3.5275
14 1 1.8024 -1.2638 2.8829
15 6 4.8639 -1.4465 -0.0039
16 1 4.7806 -2.2674 -0.7162
17 8 5.1090 -1.9665 1.3043
18 6 6.0135 -0.5180 -0.4154
19 6 5.9717 0.7571 0.4295
20 6 4.7766 1.6196 0.0064
21 1 -0.3632 0.1088 -1.0219
22 1 -0.3633 -0.9395 0.4167
23 1 -0.3633 0.8305 0.6051
24 1 -0.5917 -4.1966 1.1636
25 1 5.9166 -2.4942 1.3728
26 1 6.9647 -1.0266 -0.2583
27 1 5.9110 -0.2585 -1.4691
28 1 6.8942 1.3192 0.2837
29 1 5.8726 0.4914 1.4819
30 1 4.9481 2.0207 -0.9924
31 1 4.6450 2.4385 0.7137
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261002886.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:01
Heat of formation + Delta-G solvation = 10.483397 kcal
Electronic energy + Delta-G solvation = -15730.885266 eV
Core-core repulsion = 13206.279178 eV
Total energy + Delta-G solvation = -2524.606088 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.78942 -36.82641 -34.41339 -33.35092 -31.23783 -30.21269 -28.03949 -26.14726
-24.73497 -22.09661 -20.94131 -19.48017 -17.84477 -17.19030 -15.95732 -15.28021
-14.80295 -14.25011 -13.93766 -13.86294 -13.07449 -13.02848 -12.89826 -12.26427
-12.06526 -11.80509 -11.32308 -11.13945 -10.84991 -10.60967 -10.45527 -10.25684
-10.23640 -9.89963 -9.23831 -9.13272 -8.81249 -7.76022 -7.06371 -6.91918
-4.55921 2.88599 3.09999 3.21364 3.39668 3.77761 3.89528 3.99849
4.86034 5.25228 5.34848 5.40829 5.69665 5.76629 5.93071 6.07163
6.08955 6.13932 6.24267 6.28922 6.37513 6.41320 6.48931 6.78116
6.89508 6.98401 7.30885 7.44763 7.84697 8.10936 8.37293 8.60133
8.72095 8.85878 9.24686 10.11243
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.032033 B = 0.012586 C = 0.010609
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 873.875655 B = 2224.077701 C = 2638.706028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.112 3.888
2 N -0.419 5.419
3 N -0.364 5.364
4 C 0.093 3.907
5 C -0.338 4.338
6 C 0.282 3.718
7 C -0.475 4.475
8 H 0.103 0.897
9 C 0.102 3.898
10 N -0.806 5.806
11 Si 0.872 3.128
12 H -0.264 1.264
13 H -0.279 1.279
14 H -0.247 1.247
15 C 0.208 3.792
16 H 0.046 0.954
17 O -0.559 6.559
18 C -0.144 4.144
19 C -0.107 4.107
20 C -0.032 4.032
21 H 0.056 0.944
22 H 0.084 0.916
23 H 0.062 0.938
24 H 0.283 0.717
25 H 0.353 0.647
26 H 0.055 0.945
27 H 0.065 0.935
28 H 0.056 0.944
29 H 0.068 0.932
30 H 0.069 0.931
31 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.191 4.211 0.110 7.488
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.030 4.030
2 N -0.206 5.206
3 N -0.186 5.186
4 C -0.072 4.072
5 C -0.350 4.350
6 C 0.162 3.838
7 C -0.511 4.511
8 H 0.121 0.879
9 C -0.117 4.117
10 N -0.433 5.433
11 Si 0.696 3.304
12 H -0.190 1.190
13 H -0.204 1.204
14 H -0.170 1.170
15 C 0.149 3.851
16 H 0.064 0.936
17 O -0.362 6.362
18 C -0.181 4.181
19 C -0.145 4.145
20 C -0.071 4.071
21 H 0.075 0.925
22 H 0.102 0.898
23 H 0.080 0.920
24 H 0.093 0.907
25 H 0.197 0.803
26 H 0.074 0.926
27 H 0.084 0.916
28 H 0.074 0.926
29 H 0.087 0.913
30 H 0.087 0.913
31 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 4.516 5.386 0.254 7.033
hybrid contribution 0.590 -0.783 0.634 1.167
sum 5.106 4.603 0.887 6.932
Atomic orbital electron populations
1.21636 0.77167 1.02628 1.01563 1.49196 1.04516 1.03789 1.63143
1.76634 1.00711 1.09287 1.31965 1.21574 0.92610 0.93781 0.99238
1.19334 0.92735 0.91773 1.31185 1.18371 0.87974 0.87934 0.89540
1.18261 1.18887 0.91373 1.22584 0.87936 1.25767 0.92395 0.94686
0.98855 1.69741 1.14002 1.24134 1.35443 0.87124 0.80822 0.80118
0.82378 1.18982 1.20444 1.17006 1.19549 0.90336 0.92082 0.83144
0.93624 1.86798 1.45939 1.71268 1.32182 1.22250 0.98403 0.97348
1.00141 1.21407 0.96452 0.95739 1.00930 1.19965 0.90147 0.95967
1.01031 0.92506 0.89797 0.91969 0.90683 0.80294 0.92643 0.91634
0.92558 0.91280 0.91278 0.91430
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.47 9.81 59.85 0.59 3.06 16
2 N -0.42 -10.73 3.67 -65.53 -0.24 -10.97 16
3 N -0.36 -9.18 12.52 33.64 0.42 -8.76 16
4 C 0.09 2.18 7.06 -82.47 -0.58 1.59 16
5 C -0.34 -8.37 5.63 -103.88 -0.58 -8.96 16
6 C 0.28 7.54 5.19 -84.19 -0.44 7.10 16
7 C -0.47 -13.08 9.43 -38.11 -0.36 -13.44 16
8 H 0.10 2.95 8.06 -52.48 -0.42 2.53 16
9 C 0.10 2.69 4.41 -17.28 -0.08 2.62 16
10 N -0.81 -21.26 13.92 55.56 0.77 -20.49 16
11 Si 0.87 20.95 25.10 -169.99 -4.27 16.68 16
12 H -0.26 -5.91 6.06 56.52 0.34 -5.56 16
13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
14 H -0.25 -6.57 7.11 56.52 0.40 -6.17 16
15 C 0.21 4.31 3.72 -27.63 -0.10 4.21 16
16 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
17 O -0.56 -11.57 12.92 -35.23 -0.46 -12.03 16
18 C -0.14 -2.33 5.55 -26.52 -0.15 -2.48 16
19 C -0.11 -1.71 5.85 -26.55 -0.16 -1.87 16
20 C -0.03 -0.57 6.31 -27.52 -0.17 -0.75 16
21 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16
22 H 0.08 1.90 3.78 -51.93 -0.20 1.70 16
23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
24 H 0.28 6.77 8.29 -40.82 -0.34 6.43 16
25 H 0.35 5.24 9.10 45.56 0.41 5.65 16
26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16
28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16
30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
LS Contribution 253.44 15.07 3.82 3.82
Total: -1.00 -31.42 253.44 -5.16 -36.58
By element:
Atomic # 1 Polarization: 7.26 SS G_CDS: -3.18 Total: 4.08 kcal
Atomic # 6 Polarization: -6.88 SS G_CDS: -2.03 Total: -8.91 kcal
Atomic # 7 Polarization: -41.17 SS G_CDS: 0.95 Total: -40.22 kcal
Atomic # 8 Polarization: -11.57 SS G_CDS: -0.46 Total: -12.03 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -4.27 Total: 16.68 kcal
Total LS contribution 3.82 Total: 3.82 kcal
Total: -31.42 -5.16 -36.58 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261002886.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.059 kcal
(2) G-P(sol) polarization free energy of solvation -31.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.643 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.159 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds