Wall clock time and date at job start Mon Mar 30 2020 03:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40214 * 126.16996 * 2 1 4 4 C 1.30736 * 109.10728 * 179.97438 * 3 2 1 5 5 C 1.39307 * 108.90893 * 0.09241 * 4 3 2 6 6 C 1.37682 * 126.17376 * 180.02562 * 2 1 3 7 7 C 1.40237 * 126.73511 * 359.94155 * 6 2 1 8 8 H 1.08004 * 119.99681 * 134.23922 * 7 6 2 9 9 C 1.40165 * 120.00275 * 314.24096 * 7 6 2 10 10 N 1.30760 * 120.00140 * 153.49089 * 9 7 6 11 11 Si 1.86799 * 119.99904 * 333.48968 * 9 7 6 12 12 H 1.48504 * 109.46944 * 95.54097 * 11 9 7 13 13 H 1.48493 * 109.47364 * 215.54125 * 11 9 7 14 14 H 1.48501 * 109.47138 * 335.54652 * 11 9 7 15 15 C 1.50795 * 123.99650 * 179.87342 * 5 4 3 16 16 H 1.09003 * 109.70920 * 223.88707 * 15 5 4 17 17 O 1.42897 * 109.70915 * 103.30115 * 15 5 4 18 18 C 1.53392 * 108.23286 * 343.61206 * 15 5 4 19 19 C 1.53023 * 109.62114 * 50.20640 * 18 15 5 20 20 C 1.51086 * 127.71898 * 180.27171 * 4 3 2 21 21 H 1.09003 * 109.46592 * 83.92419 * 1 2 3 22 22 H 1.09005 * 109.47037 * 203.91786 * 1 2 3 23 23 H 1.08996 * 109.47262 * 323.92263 * 1 2 3 24 24 H 0.97001 * 120.00212 * 180.02562 * 10 9 7 25 25 H 0.96706 * 113.99739 * 179.97438 * 17 15 5 26 26 H 1.09005 * 109.44558 * 170.25766 * 18 15 5 27 27 H 1.09001 * 109.45068 * 290.16635 * 18 15 5 28 28 H 1.09003 * 109.43463 * 168.53063 * 19 18 15 29 29 H 1.08993 * 109.41881 * 48.69152 * 19 18 15 30 30 H 1.08996 * 109.70359 * 282.74198 * 20 4 3 31 31 H 1.09001 * 109.70011 * 43.31157 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2925 1.1319 0.0000 4 6 3.5423 0.7483 0.0006 5 6 3.5872 -0.6440 -0.0012 6 6 2.2777 -1.1114 -0.0005 7 6 1.8655 -2.4519 0.0001 8 1 2.3300 -3.1599 -0.6704 9 6 0.8508 -2.8728 0.8706 10 7 0.1107 -3.9055 0.5613 11 14 0.5556 -1.9584 2.4725 12 1 -0.5268 -0.9600 2.2804 13 1 0.1567 -2.9242 3.5275 14 1 1.8024 -1.2638 2.8829 15 6 4.8639 -1.4465 -0.0039 16 1 4.7806 -2.2674 -0.7162 17 8 5.1090 -1.9665 1.3043 18 6 6.0135 -0.5180 -0.4154 19 6 5.9717 0.7571 0.4295 20 6 4.7766 1.6196 0.0064 21 1 -0.3632 0.1088 -1.0219 22 1 -0.3633 -0.9395 0.4167 23 1 -0.3633 0.8305 0.6051 24 1 -0.5917 -4.1966 1.1636 25 1 5.9166 -2.4942 1.3728 26 1 6.9647 -1.0266 -0.2583 27 1 5.9110 -0.2585 -1.4691 28 1 6.8942 1.3192 0.2837 29 1 5.8726 0.4914 1.4819 30 1 4.9481 2.0207 -0.9924 31 1 4.6450 2.4385 0.7137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:01 Heat of formation + Delta-G solvation = 10.483397 kcal Electronic energy + Delta-G solvation = -15730.885266 eV Core-core repulsion = 13206.279178 eV Total energy + Delta-G solvation = -2524.606088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.78942 -36.82641 -34.41339 -33.35092 -31.23783 -30.21269 -28.03949 -26.14726 -24.73497 -22.09661 -20.94131 -19.48017 -17.84477 -17.19030 -15.95732 -15.28021 -14.80295 -14.25011 -13.93766 -13.86294 -13.07449 -13.02848 -12.89826 -12.26427 -12.06526 -11.80509 -11.32308 -11.13945 -10.84991 -10.60967 -10.45527 -10.25684 -10.23640 -9.89963 -9.23831 -9.13272 -8.81249 -7.76022 -7.06371 -6.91918 -4.55921 2.88599 3.09999 3.21364 3.39668 3.77761 3.89528 3.99849 4.86034 5.25228 5.34848 5.40829 5.69665 5.76629 5.93071 6.07163 6.08955 6.13932 6.24267 6.28922 6.37513 6.41320 6.48931 6.78116 6.89508 6.98401 7.30885 7.44763 7.84697 8.10936 8.37293 8.60133 8.72095 8.85878 9.24686 10.11243 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.012586 C = 0.010609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.875655 B = 2224.077701 C = 2638.706028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.419 5.419 3 N -0.364 5.364 4 C 0.093 3.907 5 C -0.338 4.338 6 C 0.282 3.718 7 C -0.475 4.475 8 H 0.103 0.897 9 C 0.102 3.898 10 N -0.806 5.806 11 Si 0.872 3.128 12 H -0.264 1.264 13 H -0.279 1.279 14 H -0.247 1.247 15 C 0.208 3.792 16 H 0.046 0.954 17 O -0.559 6.559 18 C -0.144 4.144 19 C -0.107 4.107 20 C -0.032 4.032 21 H 0.056 0.944 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.283 0.717 25 H 0.353 0.647 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 4.211 0.110 7.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.206 5.206 3 N -0.186 5.186 4 C -0.072 4.072 5 C -0.350 4.350 6 C 0.162 3.838 7 C -0.511 4.511 8 H 0.121 0.879 9 C -0.117 4.117 10 N -0.433 5.433 11 Si 0.696 3.304 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.170 1.170 15 C 0.149 3.851 16 H 0.064 0.936 17 O -0.362 6.362 18 C -0.181 4.181 19 C -0.145 4.145 20 C -0.071 4.071 21 H 0.075 0.925 22 H 0.102 0.898 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.197 0.803 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.516 5.386 0.254 7.033 hybrid contribution 0.590 -0.783 0.634 1.167 sum 5.106 4.603 0.887 6.932 Atomic orbital electron populations 1.21636 0.77167 1.02628 1.01563 1.49196 1.04516 1.03789 1.63143 1.76634 1.00711 1.09287 1.31965 1.21574 0.92610 0.93781 0.99238 1.19334 0.92735 0.91773 1.31185 1.18371 0.87974 0.87934 0.89540 1.18261 1.18887 0.91373 1.22584 0.87936 1.25767 0.92395 0.94686 0.98855 1.69741 1.14002 1.24134 1.35443 0.87124 0.80822 0.80118 0.82378 1.18982 1.20444 1.17006 1.19549 0.90336 0.92082 0.83144 0.93624 1.86798 1.45939 1.71268 1.32182 1.22250 0.98403 0.97348 1.00141 1.21407 0.96452 0.95739 1.00930 1.19965 0.90147 0.95967 1.01031 0.92506 0.89797 0.91969 0.90683 0.80294 0.92643 0.91634 0.92558 0.91280 0.91278 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 9.81 59.85 0.59 3.06 16 2 N -0.42 -10.73 3.67 -65.53 -0.24 -10.97 16 3 N -0.36 -9.18 12.52 33.64 0.42 -8.76 16 4 C 0.09 2.18 7.06 -82.47 -0.58 1.59 16 5 C -0.34 -8.37 5.63 -103.88 -0.58 -8.96 16 6 C 0.28 7.54 5.19 -84.19 -0.44 7.10 16 7 C -0.47 -13.08 9.43 -38.11 -0.36 -13.44 16 8 H 0.10 2.95 8.06 -52.48 -0.42 2.53 16 9 C 0.10 2.69 4.41 -17.28 -0.08 2.62 16 10 N -0.81 -21.26 13.92 55.56 0.77 -20.49 16 11 Si 0.87 20.95 25.10 -169.99 -4.27 16.68 16 12 H -0.26 -5.91 6.06 56.52 0.34 -5.56 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.25 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.21 4.31 3.72 -27.63 -0.10 4.21 16 16 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 17 O -0.56 -11.57 12.92 -35.23 -0.46 -12.03 16 18 C -0.14 -2.33 5.55 -26.52 -0.15 -2.48 16 19 C -0.11 -1.71 5.85 -26.55 -0.16 -1.87 16 20 C -0.03 -0.57 6.31 -27.52 -0.17 -0.75 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 22 H 0.08 1.90 3.78 -51.93 -0.20 1.70 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.28 6.77 8.29 -40.82 -0.34 6.43 16 25 H 0.35 5.24 9.10 45.56 0.41 5.65 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 253.44 15.07 3.82 3.82 Total: -1.00 -31.42 253.44 -5.16 -36.58 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.18 Total: 4.08 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -2.03 Total: -8.91 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.95 Total: -40.22 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.46 Total: -12.03 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.27 Total: 16.68 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.42 -5.16 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.059 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds