Wall clock time and date at job start Mon Mar 30 2020 03:06:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 N 1.40214 * 126.16996 * 2 1
4 4 C 1.30736 * 109.10728 * 179.97438 * 3 2 1
5 5 C 1.39307 * 108.90893 * 0.09241 * 4 3 2
6 6 C 1.37682 * 126.17376 * 180.02562 * 2 1 3
7 7 C 1.40237 * 126.73511 * 359.94155 * 6 2 1
8 8 H 1.08004 * 119.99681 * 134.23922 * 7 6 2
9 9 C 1.40165 * 120.00275 * 314.24096 * 7 6 2
10 10 N 1.30760 * 120.00140 * 153.49089 * 9 7 6
11 11 Si 1.86799 * 119.99904 * 333.48968 * 9 7 6
12 12 H 1.48504 * 109.46944 * 95.54097 * 11 9 7
13 13 H 1.48493 * 109.47364 * 215.54125 * 11 9 7
14 14 H 1.48501 * 109.47138 * 335.54652 * 11 9 7
15 15 C 1.50795 * 123.99650 * 179.87342 * 5 4 3
16 16 H 1.09003 * 109.70920 * 223.88707 * 15 5 4
17 17 O 1.42897 * 109.70915 * 103.30115 * 15 5 4
18 18 C 1.53392 * 108.23286 * 343.61206 * 15 5 4
19 19 C 1.53023 * 109.62114 * 50.20640 * 18 15 5
20 20 C 1.51086 * 127.71898 * 180.27171 * 4 3 2
21 21 H 1.09003 * 109.46592 * 83.92419 * 1 2 3
22 22 H 1.09005 * 109.47037 * 203.91786 * 1 2 3
23 23 H 1.08996 * 109.47262 * 323.92263 * 1 2 3
24 24 H 0.97001 * 120.00212 * 180.02562 * 10 9 7
25 25 H 0.96706 * 113.99739 * 179.97438 * 17 15 5
26 26 H 1.09005 * 109.44558 * 170.25766 * 18 15 5
27 27 H 1.09001 * 109.45068 * 290.16635 * 18 15 5
28 28 H 1.09003 * 109.43463 * 168.53063 * 19 18 15
29 29 H 1.08993 * 109.41881 * 48.69152 * 19 18 15
30 30 H 1.08996 * 109.70359 * 282.74198 * 20 4 3
31 31 H 1.09001 * 109.70011 * 43.31157 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2925 1.1319 0.0000
4 6 3.5423 0.7483 0.0006
5 6 3.5872 -0.6440 -0.0012
6 6 2.2777 -1.1114 -0.0005
7 6 1.8655 -2.4519 0.0001
8 1 2.3300 -3.1599 -0.6704
9 6 0.8508 -2.8728 0.8706
10 7 0.1107 -3.9055 0.5613
11 14 0.5556 -1.9584 2.4725
12 1 -0.5268 -0.9600 2.2804
13 1 0.1567 -2.9242 3.5275
14 1 1.8024 -1.2638 2.8829
15 6 4.8639 -1.4465 -0.0039
16 1 4.7806 -2.2674 -0.7162
17 8 5.1090 -1.9665 1.3043
18 6 6.0135 -0.5180 -0.4154
19 6 5.9717 0.7571 0.4295
20 6 4.7766 1.6196 0.0064
21 1 -0.3632 0.1088 -1.0219
22 1 -0.3633 -0.9395 0.4167
23 1 -0.3633 0.8305 0.6051
24 1 -0.5917 -4.1966 1.1636
25 1 5.9166 -2.4942 1.3728
26 1 6.9647 -1.0266 -0.2583
27 1 5.9110 -0.2585 -1.4691
28 1 6.8942 1.3192 0.2837
29 1 5.8726 0.4914 1.4819
30 1 4.9481 2.0207 -0.9924
31 1 4.6450 2.4385 0.7137
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261002886.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:01
Heat of formation + Delta-G solvation = -13.635694 kcal
Electronic energy + Delta-G solvation = -15731.931148 eV
Core-core repulsion = 13206.279178 eV
Total energy + Delta-G solvation = -2525.651970 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.60143 -38.40577 -36.10998 -35.19395 -32.96091 -32.05122 -29.65428 -27.82232
-26.63432 -23.69000 -22.44627 -21.41399 -19.59722 -19.04527 -17.53446 -17.19263
-16.47072 -15.94097 -15.60653 -15.55048 -15.00643 -14.62422 -14.41975 -13.98876
-13.66586 -13.51455 -13.19770 -12.86973 -12.47144 -12.16972 -12.13646 -12.04803
-11.75488 -11.47746 -11.12014 -10.94435 -10.42087 -9.64748 -8.98014 -8.91472
-6.61395 0.96496 1.14963 1.27918 1.43155 1.93934 2.06064 2.09844
2.86201 3.69752 3.98962 4.07480 4.18386 4.27270 4.37939 4.38962
4.57684 4.71355 4.72929 4.91537 4.95705 5.03330 5.09612 5.18089
5.30086 5.48012 5.55749 5.62417 5.93382 6.23256 6.34730 6.68277
6.89760 7.27189 7.34358 8.15510
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.032033 B = 0.012586 C = 0.010609
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 873.875655 B = 2224.077701 C = 2638.706028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.104 3.896
2 N -0.430 5.430
3 N -0.382 5.382
4 C 0.086 3.914
5 C -0.355 4.355
6 C 0.251 3.749
7 C -0.499 4.499
8 H 0.073 0.927
9 C 0.081 3.919
10 N -0.831 5.831
11 Si 0.916 3.084
12 H -0.238 1.238
13 H -0.260 1.260
14 H -0.287 1.287
15 C 0.201 3.799
16 H 0.032 0.968
17 O -0.582 6.582
18 C -0.134 4.134
19 C -0.102 4.102
20 C -0.033 4.033
21 H 0.073 0.927
22 H 0.075 0.925
23 H 0.082 0.918
24 H 0.294 0.706
25 H 0.378 0.622
26 H 0.091 0.909
27 H 0.071 0.929
28 H 0.101 0.899
29 H 0.051 0.949
30 H 0.092 0.908
31 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.420 5.654 0.496 9.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.037 4.037
2 N -0.217 5.217
3 N -0.204 5.204
4 C -0.079 4.079
5 C -0.367 4.367
6 C 0.130 3.870
7 C -0.535 4.535
8 H 0.091 0.909
9 C -0.136 4.136
10 N -0.459 5.459
11 Si 0.739 3.261
12 H -0.162 1.162
13 H -0.184 1.184
14 H -0.213 1.213
15 C 0.142 3.858
16 H 0.050 0.950
17 O -0.389 6.389
18 C -0.172 4.172
19 C -0.140 4.140
20 C -0.072 4.072
21 H 0.092 0.908
22 H 0.093 0.907
23 H 0.101 0.899
24 H 0.105 0.895
25 H 0.226 0.774
26 H 0.109 0.891
27 H 0.090 0.910
28 H 0.119 0.881
29 H 0.069 0.931
30 H 0.110 0.890
31 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 5.726 6.810 0.635 8.920
hybrid contribution 0.277 -1.220 0.463 1.334
sum 6.003 5.591 1.099 8.276
Atomic orbital electron populations
1.21839 0.75805 1.02950 1.03121 1.49445 1.05637 1.03603 1.62991
1.76587 1.01682 1.09380 1.32740 1.22468 0.93682 0.94241 0.97536
1.20080 0.93670 0.93256 1.29673 1.18595 0.89402 0.88018 0.90958
1.18139 1.20189 0.91699 1.23452 0.90938 1.26154 0.92023 0.95250
1.00202 1.69727 1.14675 1.24932 1.36596 0.86460 0.79560 0.79966
0.80085 1.16158 1.18433 1.21299 1.19638 0.90791 0.92437 0.82905
0.95005 1.86701 1.48011 1.72082 1.32124 1.22178 0.97839 0.96779
1.00378 1.21421 0.97373 0.95616 0.99558 1.20233 0.88316 0.95802
1.02846 0.90808 0.90658 0.89901 0.89474 0.77401 0.89054 0.90998
0.88102 0.93055 0.88954 0.90267
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 4.52 9.81 127.77 1.25 5.77 16
2 N -0.43 -22.01 3.67 -361.23 -1.33 -23.33 16
3 N -0.38 -18.97 12.52 -47.47 -0.59 -19.56 16
4 C 0.09 3.92 7.06 43.10 0.30 4.22 16
5 C -0.36 -17.62 5.63 -19.38 -0.11 -17.73 16
6 C 0.25 13.71 5.19 38.90 0.20 13.91 16
7 C -0.50 -28.48 9.43 23.22 0.22 -28.26 16
8 H 0.07 4.44 8.06 -2.91 -0.02 4.41 16
9 C 0.08 4.34 4.41 85.32 0.38 4.72 16
10 N -0.83 -44.39 13.92 21.87 0.30 -44.08 16
11 Si 0.92 43.31 25.10 68.60 1.72 45.04 16
12 H -0.24 -10.08 6.06 99.48 0.60 -9.47 16
13 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16
14 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16
15 C 0.20 8.23 3.72 30.01 0.11 8.35 16
16 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16
17 O -0.58 -23.82 12.92 -148.98 -1.92 -25.74 16
18 C -0.13 -3.93 5.55 30.73 0.17 -3.76 16
19 C -0.10 -2.86 5.85 30.71 0.18 -2.68 16
20 C -0.03 -1.08 6.31 30.08 0.19 -0.89 16
21 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16
22 H 0.07 3.37 3.78 -2.38 -0.01 3.36 16
23 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16
24 H 0.29 14.07 8.29 -92.71 -0.77 13.30 16
25 H 0.38 10.71 9.10 -74.05 -0.67 10.04 16
26 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16
27 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16
28 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16
29 H 0.05 1.64 7.75 -2.39 -0.02 1.62 16
30 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16
31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
Total: -1.00 -69.25 253.44 1.45 -67.80
By element:
Atomic # 1 Polarization: 15.86 SS G_CDS: 0.37 Total: 16.23 kcal
Atomic # 6 Polarization: -19.25 SS G_CDS: 2.90 Total: -16.35 kcal
Atomic # 7 Polarization: -85.36 SS G_CDS: -1.62 Total: -86.98 kcal
Atomic # 8 Polarization: -23.82 SS G_CDS: -1.92 Total: -25.74 kcal
Atomic # 14 Polarization: 43.31 SS G_CDS: 1.72 Total: 45.04 kcal
Total: -69.25 1.45 -67.80 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261002886.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.167 kcal
(2) G-P(sol) polarization free energy of solvation -69.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.083 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.636 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds