Wall clock time and date at job start Mon Mar 30 2020 03:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40214 * 126.16996 * 2 1 4 4 C 1.30736 * 109.10728 * 179.97438 * 3 2 1 5 5 C 1.39307 * 108.90893 * 0.09241 * 4 3 2 6 6 C 1.37682 * 126.17376 * 180.02562 * 2 1 3 7 7 C 1.40237 * 126.73511 * 359.94155 * 6 2 1 8 8 H 1.08004 * 119.99681 * 134.23922 * 7 6 2 9 9 C 1.40165 * 120.00275 * 314.24096 * 7 6 2 10 10 N 1.30760 * 120.00140 * 153.49089 * 9 7 6 11 11 Si 1.86799 * 119.99904 * 333.48968 * 9 7 6 12 12 H 1.48504 * 109.46944 * 95.54097 * 11 9 7 13 13 H 1.48493 * 109.47364 * 215.54125 * 11 9 7 14 14 H 1.48501 * 109.47138 * 335.54652 * 11 9 7 15 15 C 1.50795 * 123.99650 * 179.87342 * 5 4 3 16 16 H 1.09003 * 109.70920 * 223.88707 * 15 5 4 17 17 O 1.42897 * 109.70915 * 103.30115 * 15 5 4 18 18 C 1.53392 * 108.23286 * 343.61206 * 15 5 4 19 19 C 1.53023 * 109.62114 * 50.20640 * 18 15 5 20 20 C 1.51086 * 127.71898 * 180.27171 * 4 3 2 21 21 H 1.09003 * 109.46592 * 83.92419 * 1 2 3 22 22 H 1.09005 * 109.47037 * 203.91786 * 1 2 3 23 23 H 1.08996 * 109.47262 * 323.92263 * 1 2 3 24 24 H 0.97001 * 120.00212 * 180.02562 * 10 9 7 25 25 H 0.96706 * 113.99739 * 179.97438 * 17 15 5 26 26 H 1.09005 * 109.44558 * 170.25766 * 18 15 5 27 27 H 1.09001 * 109.45068 * 290.16635 * 18 15 5 28 28 H 1.09003 * 109.43463 * 168.53063 * 19 18 15 29 29 H 1.08993 * 109.41881 * 48.69152 * 19 18 15 30 30 H 1.08996 * 109.70359 * 282.74198 * 20 4 3 31 31 H 1.09001 * 109.70011 * 43.31157 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2925 1.1319 0.0000 4 6 3.5423 0.7483 0.0006 5 6 3.5872 -0.6440 -0.0012 6 6 2.2777 -1.1114 -0.0005 7 6 1.8655 -2.4519 0.0001 8 1 2.3300 -3.1599 -0.6704 9 6 0.8508 -2.8728 0.8706 10 7 0.1107 -3.9055 0.5613 11 14 0.5556 -1.9584 2.4725 12 1 -0.5268 -0.9600 2.2804 13 1 0.1567 -2.9242 3.5275 14 1 1.8024 -1.2638 2.8829 15 6 4.8639 -1.4465 -0.0039 16 1 4.7806 -2.2674 -0.7162 17 8 5.1090 -1.9665 1.3043 18 6 6.0135 -0.5180 -0.4154 19 6 5.9717 0.7571 0.4295 20 6 4.7766 1.6196 0.0064 21 1 -0.3632 0.1088 -1.0219 22 1 -0.3633 -0.9395 0.4167 23 1 -0.3633 0.8305 0.6051 24 1 -0.5917 -4.1966 1.1636 25 1 5.9166 -2.4942 1.3728 26 1 6.9647 -1.0266 -0.2583 27 1 5.9110 -0.2585 -1.4691 28 1 6.8942 1.3192 0.2837 29 1 5.8726 0.4914 1.4819 30 1 4.9481 2.0207 -0.9924 31 1 4.6450 2.4385 0.7137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:01 Heat of formation + Delta-G solvation = -13.635694 kcal Electronic energy + Delta-G solvation = -15731.931148 eV Core-core repulsion = 13206.279178 eV Total energy + Delta-G solvation = -2525.651970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.60143 -38.40577 -36.10998 -35.19395 -32.96091 -32.05122 -29.65428 -27.82232 -26.63432 -23.69000 -22.44627 -21.41399 -19.59722 -19.04527 -17.53446 -17.19263 -16.47072 -15.94097 -15.60653 -15.55048 -15.00643 -14.62422 -14.41975 -13.98876 -13.66586 -13.51455 -13.19770 -12.86973 -12.47144 -12.16972 -12.13646 -12.04803 -11.75488 -11.47746 -11.12014 -10.94435 -10.42087 -9.64748 -8.98014 -8.91472 -6.61395 0.96496 1.14963 1.27918 1.43155 1.93934 2.06064 2.09844 2.86201 3.69752 3.98962 4.07480 4.18386 4.27270 4.37939 4.38962 4.57684 4.71355 4.72929 4.91537 4.95705 5.03330 5.09612 5.18089 5.30086 5.48012 5.55749 5.62417 5.93382 6.23256 6.34730 6.68277 6.89760 7.27189 7.34358 8.15510 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032033 B = 0.012586 C = 0.010609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.875655 B = 2224.077701 C = 2638.706028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.430 5.430 3 N -0.382 5.382 4 C 0.086 3.914 5 C -0.355 4.355 6 C 0.251 3.749 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.081 3.919 10 N -0.831 5.831 11 Si 0.916 3.084 12 H -0.238 1.238 13 H -0.260 1.260 14 H -0.287 1.287 15 C 0.201 3.799 16 H 0.032 0.968 17 O -0.582 6.582 18 C -0.134 4.134 19 C -0.102 4.102 20 C -0.033 4.033 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.294 0.706 25 H 0.378 0.622 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 5.654 0.496 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.217 5.217 3 N -0.204 5.204 4 C -0.079 4.079 5 C -0.367 4.367 6 C 0.130 3.870 7 C -0.535 4.535 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.459 5.459 11 Si 0.739 3.261 12 H -0.162 1.162 13 H -0.184 1.184 14 H -0.213 1.213 15 C 0.142 3.858 16 H 0.050 0.950 17 O -0.389 6.389 18 C -0.172 4.172 19 C -0.140 4.140 20 C -0.072 4.072 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.226 0.774 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.726 6.810 0.635 8.920 hybrid contribution 0.277 -1.220 0.463 1.334 sum 6.003 5.591 1.099 8.276 Atomic orbital electron populations 1.21839 0.75805 1.02950 1.03121 1.49445 1.05637 1.03603 1.62991 1.76587 1.01682 1.09380 1.32740 1.22468 0.93682 0.94241 0.97536 1.20080 0.93670 0.93256 1.29673 1.18595 0.89402 0.88018 0.90958 1.18139 1.20189 0.91699 1.23452 0.90938 1.26154 0.92023 0.95250 1.00202 1.69727 1.14675 1.24932 1.36596 0.86460 0.79560 0.79966 0.80085 1.16158 1.18433 1.21299 1.19638 0.90791 0.92437 0.82905 0.95005 1.86701 1.48011 1.72082 1.32124 1.22178 0.97839 0.96779 1.00378 1.21421 0.97373 0.95616 0.99558 1.20233 0.88316 0.95802 1.02846 0.90808 0.90658 0.89901 0.89474 0.77401 0.89054 0.90998 0.88102 0.93055 0.88954 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.52 9.81 127.77 1.25 5.77 16 2 N -0.43 -22.01 3.67 -361.23 -1.33 -23.33 16 3 N -0.38 -18.97 12.52 -47.47 -0.59 -19.56 16 4 C 0.09 3.92 7.06 43.10 0.30 4.22 16 5 C -0.36 -17.62 5.63 -19.38 -0.11 -17.73 16 6 C 0.25 13.71 5.19 38.90 0.20 13.91 16 7 C -0.50 -28.48 9.43 23.22 0.22 -28.26 16 8 H 0.07 4.44 8.06 -2.91 -0.02 4.41 16 9 C 0.08 4.34 4.41 85.32 0.38 4.72 16 10 N -0.83 -44.39 13.92 21.87 0.30 -44.08 16 11 Si 0.92 43.31 25.10 68.60 1.72 45.04 16 12 H -0.24 -10.08 6.06 99.48 0.60 -9.47 16 13 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 14 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 15 C 0.20 8.23 3.72 30.01 0.11 8.35 16 16 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 17 O -0.58 -23.82 12.92 -148.98 -1.92 -25.74 16 18 C -0.13 -3.93 5.55 30.73 0.17 -3.76 16 19 C -0.10 -2.86 5.85 30.71 0.18 -2.68 16 20 C -0.03 -1.08 6.31 30.08 0.19 -0.89 16 21 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 22 H 0.07 3.37 3.78 -2.38 -0.01 3.36 16 23 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 24 H 0.29 14.07 8.29 -92.71 -0.77 13.30 16 25 H 0.38 10.71 9.10 -74.05 -0.67 10.04 16 26 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 27 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.64 7.75 -2.39 -0.02 1.62 16 30 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -69.25 253.44 1.45 -67.80 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.37 Total: 16.23 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 2.90 Total: -16.35 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.62 Total: -86.98 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.92 Total: -25.74 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.72 Total: 45.04 kcal Total: -69.25 1.45 -67.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.167 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds