Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40209 * 126.17244 * 2 1 4 4 C 1.30736 * 109.11315 * 179.97438 * 3 2 1 5 5 C 1.39306 * 108.90289 * 0.09120 * 4 3 2 6 6 C 1.37687 * 126.17019 * 180.02562 * 2 1 3 7 7 C 1.40232 * 126.73954 * 359.93736 * 6 2 1 8 8 H 1.07994 * 120.00161 * 138.96701 * 7 6 2 9 9 C 1.40162 * 119.99718 * 318.97565 * 7 6 2 10 10 N 1.30766 * 120.00331 * 343.13773 * 9 7 6 11 11 Si 1.86802 * 120.00044 * 163.14346 * 9 7 6 12 12 H 1.48504 * 109.47046 * 59.99732 * 11 9 7 13 13 H 1.48505 * 109.47343 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47135 * 299.99756 * 11 9 7 15 15 C 1.50793 * 123.99800 * 179.86083 * 5 4 3 16 16 H 1.08998 * 109.71363 * 103.27549 * 15 5 4 17 17 O 1.42902 * 109.71226 * 223.90717 * 15 5 4 18 18 C 1.53394 * 108.23115 * 343.58827 * 15 5 4 19 19 C 1.53049 * 109.60868 * 50.22974 * 18 15 5 20 20 C 1.50971 * 127.74784 * 180.24677 * 4 3 2 21 21 H 1.08996 * 109.47412 * 275.56030 * 1 2 3 22 22 H 1.09008 * 109.46796 * 35.55900 * 1 2 3 23 23 H 1.08999 * 109.47096 * 155.55479 * 1 2 3 24 24 H 0.96998 * 120.00440 * 185.07540 * 10 9 7 25 25 H 0.96695 * 114.00245 * 178.77514 * 17 15 5 26 26 H 1.09002 * 109.45172 * 290.19084 * 18 15 5 27 27 H 1.09005 * 109.44815 * 170.27202 * 18 15 5 28 28 H 1.09006 * 109.42381 * 48.68656 * 19 18 15 29 29 H 1.09001 * 109.42769 * 168.57610 * 19 18 15 30 30 H 1.09003 * 109.63653 * 43.36377 * 20 4 3 31 31 H 1.09002 * 109.70582 * 282.79235 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2925 1.1318 0.0000 4 6 3.5424 0.7483 0.0006 5 6 3.5872 -0.6440 -0.0012 6 6 2.2776 -1.1115 -0.0005 7 6 1.8655 -2.4519 0.0001 8 1 2.3806 -3.1755 -0.6142 9 6 0.7849 -2.8524 0.7979 10 7 0.3725 -2.0853 1.7733 11 14 -0.0661 -4.4823 0.4680 12 1 0.9135 -5.5895 0.6085 13 1 -1.1694 -4.6712 1.4439 14 1 -0.6186 -4.4821 -0.9104 15 6 4.8638 -1.4466 -0.0042 16 1 5.0513 -1.8429 0.9938 17 8 4.7546 -2.5225 -0.9382 18 6 6.0132 -0.5183 -0.4165 19 6 5.9720 0.7570 0.4287 20 6 4.7761 1.6184 0.0059 21 1 -0.3634 0.0996 1.0228 22 1 -0.3633 0.8361 -0.5977 23 1 -0.3633 -0.9355 -0.4253 24 1 -0.3260 -2.3942 2.3712 25 1 5.5499 -3.0686 -1.0039 26 1 5.9101 -0.2588 -1.4702 27 1 6.9646 -1.0269 -0.2599 28 1 5.8734 0.4913 1.4812 29 1 6.8940 1.3194 0.2816 30 1 4.6442 2.4367 0.7138 31 1 4.9472 2.0197 -0.9930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -21.616897 kcal Electronic energy + Delta-G solvation = -15633.736375 eV Core-core repulsion = 13107.738314 eV Total energy + Delta-G solvation = -2525.998061 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33954 -38.20541 -36.25740 -35.14209 -32.58617 -31.62407 -29.43582 -27.67832 -26.47993 -23.50096 -22.42788 -21.44349 -19.35694 -18.63153 -17.88123 -16.96529 -16.16907 -15.75429 -15.44352 -15.19942 -14.82079 -14.68148 -14.00267 -13.72293 -13.44537 -13.13106 -12.94856 -12.80451 -12.68995 -12.40432 -12.08548 -11.79523 -11.70950 -11.41837 -10.97397 -10.81031 -10.48343 -9.42122 -8.69336 -8.62280 -6.49586 1.27087 1.39347 1.50397 1.74710 2.20625 2.27816 2.32055 3.10506 3.82847 3.91505 4.10261 4.24084 4.38491 4.49835 4.60372 4.71207 4.80569 4.85712 4.92158 5.04197 5.10487 5.24975 5.31727 5.32486 5.57351 5.63754 5.76749 6.05754 6.46415 6.58413 6.84280 7.20350 7.32205 7.60551 8.37271 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032737 B = 0.011324 C = 0.009005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.087062 B = 2471.959847 C = 3108.651296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.149 3.851 2 N -0.415 5.415 3 N -0.404 5.404 4 C 0.076 3.924 5 C -0.386 4.386 6 C 0.277 3.723 7 C -0.491 4.491 8 H 0.092 0.908 9 C 0.043 3.957 10 N -0.842 5.842 11 Si 0.981 3.019 12 H -0.262 1.262 13 H -0.268 1.268 14 H -0.261 1.261 15 C 0.210 3.790 16 H 0.026 0.974 17 O -0.577 6.577 18 C -0.134 4.134 19 C -0.100 4.100 20 C -0.032 4.032 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.288 0.712 25 H 0.378 0.622 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 -0.168 -1.751 6.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.200 5.200 3 N -0.227 5.227 4 C -0.088 4.088 5 C -0.398 4.398 6 C 0.154 3.846 7 C -0.527 4.527 8 H 0.109 0.891 9 C -0.172 4.172 10 N -0.472 5.472 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.192 1.192 14 H -0.186 1.186 15 C 0.151 3.849 16 H 0.044 0.956 17 O -0.383 6.383 18 C -0.171 4.171 19 C -0.138 4.138 20 C -0.071 4.071 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.225 0.775 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.851 1.203 -1.691 5.276 hybrid contribution 0.099 -1.576 0.260 1.601 sum 4.950 -0.373 -1.431 5.166 Atomic orbital electron populations 1.21254 0.75864 1.01129 1.01108 1.48976 1.05473 1.03267 1.62301 1.76486 1.01759 1.10380 1.34058 1.22304 0.93604 0.94146 0.98713 1.20145 0.93843 0.93027 1.32772 1.18637 0.88613 0.88478 0.88827 1.18854 1.14745 0.92275 1.26836 0.89055 1.26668 0.95022 1.02521 0.92941 1.69834 1.25902 1.39049 1.12388 0.85261 0.78013 0.77326 0.79151 1.18607 1.19236 1.18567 1.19560 0.91149 0.84938 0.89256 0.95647 1.86690 1.42603 1.44802 1.64230 1.22189 0.97921 0.96801 1.00239 1.21437 0.97507 0.95486 0.99379 1.20151 0.88687 0.95912 1.02326 0.92895 0.91522 0.91529 0.90142 0.77505 0.92174 0.89163 0.92630 0.87815 0.90442 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.19 9.64 127.77 1.23 8.43 16 2 N -0.42 -23.19 4.04 -361.23 -1.46 -24.65 16 3 N -0.40 -21.97 12.52 -47.56 -0.60 -22.57 16 4 C 0.08 3.75 7.06 43.06 0.30 4.05 16 5 C -0.39 -20.20 5.70 -19.38 -0.11 -20.31 16 6 C 0.28 15.91 6.09 38.90 0.24 16.15 16 7 C -0.49 -27.41 8.53 23.22 0.20 -27.21 16 8 H 0.09 5.14 7.08 -2.91 -0.02 5.12 16 9 C 0.04 2.18 4.17 85.32 0.36 2.54 16 10 N -0.84 -44.28 10.92 21.87 0.24 -44.04 16 11 Si 0.98 38.90 29.60 68.60 2.03 40.93 16 12 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 13 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 14 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 15 C 0.21 8.89 3.72 30.01 0.11 9.00 16 16 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 17 O -0.58 -23.93 12.06 -148.98 -1.80 -25.73 16 18 C -0.13 -4.17 5.52 30.74 0.17 -4.00 16 19 C -0.10 -2.91 5.87 30.72 0.18 -2.73 16 20 C -0.03 -1.13 6.30 30.04 0.19 -0.94 16 21 H 0.05 2.59 7.44 -2.39 -0.02 2.57 16 22 H 0.07 2.83 8.14 -2.38 -0.02 2.82 16 23 H 0.07 3.18 6.84 -2.39 -0.02 3.17 16 24 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 25 H 0.38 10.82 9.09 -74.06 -0.67 10.15 16 26 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 27 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 29 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -70.00 256.86 1.75 -68.25 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.47 Total: 22.83 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 2.87 Total: -15.03 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -1.82 Total: -91.25 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.80 Total: -25.73 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -70.00 1.75 -68.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.635 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds