Wall clock time and date at job start Mon Mar 30 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28846 * 124.94908 * 2 1 4 4 C 1.33136 * 110.00927 * 179.97438 * 3 2 1 5 5 C 1.41426 * 126.72311 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99655 * 180.02562 * 5 4 3 7 7 C 1.39845 * 120.00223 * 0.02562 * 5 4 3 8 8 N 1.30902 * 119.99986 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00323 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47402 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47356 * 300.00176 * 9 7 5 12 12 H 1.48506 * 109.46825 * 60.00160 * 9 7 5 13 13 C 1.41246 * 106.55287 * 0.22179 * 4 3 2 14 14 C 1.35217 * 124.95140 * 180.02562 * 2 1 3 15 15 C 1.50732 * 128.76860 * 0.18614 * 14 2 1 16 16 C 1.53603 * 108.27965 * 162.73041 * 15 14 2 17 17 C 1.53106 * 109.44421 * 50.30042 * 16 15 14 18 18 C 1.50380 * 129.33671 * 179.97438 * 13 4 3 19 19 H 1.09001 * 109.70013 * 43.95205 * 18 13 4 20 20 O 1.42900 * 109.69951 * 283.34452 * 18 13 4 21 21 H 1.08999 * 109.47315 * 89.97467 * 1 2 3 22 22 H 1.09000 * 109.46775 * 209.97456 * 1 2 3 23 23 H 1.08997 * 109.47290 * 329.97019 * 1 2 3 24 24 H 0.97001 * 119.99858 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.68905 * 283.01974 * 15 14 2 26 26 H 1.09003 * 109.68514 * 43.58826 * 15 14 2 27 27 H 1.09003 * 109.70409 * 290.20528 * 16 15 14 28 28 H 1.08996 * 109.34501 * 170.17730 * 16 15 14 29 29 H 1.08997 * 109.47131 * 169.80921 * 17 16 15 30 30 H 1.09005 * 109.46234 * 49.81551 * 17 16 15 31 31 H 0.96703 * 113.99968 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2030 1.0561 0.0000 4 6 3.4894 0.7129 0.0006 5 6 4.5987 1.5901 0.0002 6 1 5.6024 1.1914 0.0003 7 6 4.3960 2.9738 -0.0002 8 7 3.1795 3.4571 -0.0009 9 14 5.8612 4.1325 0.0001 10 1 5.3810 5.5378 -0.0011 11 1 6.6832 3.8908 1.2129 12 1 6.6841 3.8901 -1.2121 13 6 3.5292 -0.6990 -0.0043 14 6 2.2396 -1.1083 -0.0005 15 6 1.8170 -2.5552 -0.0050 16 6 3.0201 -3.4071 -0.4367 17 6 4.2438 -3.0213 0.3986 18 6 4.7186 -1.6191 -0.0064 19 1 5.4606 -1.2621 0.7078 20 8 5.2908 -1.6637 -1.3151 21 1 -0.3634 0.0005 -1.0276 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3634 0.8897 0.5143 24 1 3.0389 4.4168 -0.0008 25 1 1.4895 -2.8452 0.9934 26 1 1.0024 -2.6976 -0.7151 27 1 3.2322 -3.2353 -1.4920 28 1 2.7911 -4.4611 -0.2796 29 1 5.0442 -3.7403 0.2241 30 1 3.9774 -3.0237 1.4556 31 1 6.0641 -2.2399 -1.3868 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261016841.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:17 Heat of formation + Delta-G solvation = 15.850240 kcal Electronic energy + Delta-G solvation = -15533.717280 eV Core-core repulsion = 13009.343916 eV Total energy + Delta-G solvation = -2524.373364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.68029 -37.08081 -34.21545 -33.38459 -31.54668 -28.76056 -28.12484 -27.09849 -23.94788 -22.44439 -21.16384 -19.54107 -17.90468 -16.45284 -15.97146 -15.50231 -14.86291 -14.44265 -14.13133 -13.41315 -13.22505 -12.86777 -12.55616 -12.35029 -11.98402 -11.64615 -11.19635 -11.08267 -10.89153 -10.65477 -10.45663 -10.24850 -10.04230 -9.80114 -9.07948 -9.00795 -8.23189 -7.31274 -7.10179 -6.17055 -4.01718 3.25041 3.29920 3.33757 3.39034 4.11474 4.30488 4.45084 5.21679 5.25594 5.30079 5.49674 5.56203 5.74631 5.88608 5.93920 5.96202 6.02607 6.05700 6.15315 6.25090 6.30401 6.44447 6.68668 6.80743 7.37977 7.49695 7.61091 7.94940 8.44298 8.52003 8.80717 9.13755 9.39805 10.39245 10.81291 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029899 B = 0.011052 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.247435 B = 2532.965826 C = 3344.517488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.326 5.326 3 N -0.335 5.335 4 C 0.213 3.787 5 C -0.441 4.441 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.784 5.784 9 Si 0.903 3.097 10 H -0.284 1.284 11 H -0.270 1.270 12 H -0.269 1.269 13 C -0.259 4.259 14 C -0.003 4.003 15 C -0.039 4.039 16 C -0.104 4.104 17 C -0.146 4.146 18 C 0.198 3.802 19 H 0.051 0.949 20 O -0.557 6.557 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.266 0.734 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 -10.455 0.909 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.108 5.108 3 N -0.168 5.168 4 C 0.066 3.934 5 C -0.479 4.479 6 H 0.095 0.905 7 C -0.146 4.146 8 N -0.413 5.413 9 Si 0.728 3.272 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.195 1.195 13 C -0.272 4.272 14 C -0.132 4.132 15 C -0.078 4.078 16 C -0.142 4.142 17 C -0.184 4.184 18 C 0.139 3.861 19 H 0.069 0.931 20 O -0.360 6.360 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.775 -8.900 0.790 9.356 hybrid contribution 1.490 -0.436 0.130 1.558 sum -1.285 -9.336 0.919 9.468 Atomic orbital electron populations 1.21486 0.77399 1.02668 1.01720 1.45184 1.05549 1.03505 1.56556 1.75066 1.02692 1.06668 1.32332 1.18917 0.90652 0.88910 0.94957 1.18447 0.91700 0.89480 1.48320 0.90533 1.25751 0.96040 0.98887 0.93908 1.69976 1.20772 1.13074 1.37470 0.86490 0.82330 0.79017 0.79322 1.20896 1.19526 1.19451 1.19337 0.91316 0.94707 1.21804 1.20716 0.91905 0.89569 1.10965 1.20037 0.97645 0.89874 1.00287 1.21440 0.94431 0.97425 1.00897 1.22321 0.97831 0.97980 1.00238 1.19614 0.92181 0.90917 0.83363 0.93112 1.86782 1.47383 1.69973 1.31904 0.92445 0.91469 0.90201 0.92320 0.91837 0.92203 0.91191 0.92591 0.92511 0.91571 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.98 11.18 59.84 0.67 2.65 16 2 N -0.33 -7.95 3.71 -63.82 -0.24 -8.19 16 3 N -0.34 -9.85 10.29 32.19 0.33 -9.52 16 4 C 0.21 6.33 6.77 -84.95 -0.58 5.76 16 5 C -0.44 -13.10 9.34 -37.77 -0.35 -13.45 16 6 H 0.08 2.18 7.84 -52.49 -0.41 1.76 16 7 C 0.07 2.04 5.49 -17.35 -0.10 1.95 16 8 N -0.78 -23.32 11.98 55.54 0.67 -22.65 16 9 Si 0.90 20.97 29.56 -169.99 -5.02 15.95 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 13 C -0.26 -6.56 5.65 -104.68 -0.59 -7.15 16 14 C 0.00 -0.07 6.73 -82.13 -0.55 -0.62 16 15 C -0.04 -0.67 5.82 -27.55 -0.16 -0.83 16 16 C -0.10 -1.60 5.89 -26.36 -0.16 -1.76 16 17 C -0.15 -2.33 5.58 -26.43 -0.15 -2.47 16 18 C 0.20 4.10 3.81 -27.79 -0.11 4.00 16 19 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 20 O -0.56 -11.32 12.95 -35.23 -0.46 -11.78 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 23 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 24 H 0.27 7.30 8.30 -40.82 -0.34 6.96 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.18 7.80 -51.93 -0.40 0.78 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 31 H 0.36 5.07 9.10 45.56 0.41 5.48 16 LS Contribution 262.08 15.07 3.95 3.95 Total: -1.00 -35.63 262.08 -6.16 -41.80 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.33 Total: 2.39 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.07 Total: -11.94 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.76 Total: -40.37 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.46 Total: -11.78 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -35.63 -6.16 -41.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016841.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.648 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds