Wall clock time and date at job start Mon Mar 30 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28846 * 124.94908 * 2 1 4 4 C 1.33136 * 110.00927 * 179.97438 * 3 2 1 5 5 C 1.41426 * 126.72311 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99655 * 180.02562 * 5 4 3 7 7 C 1.39845 * 120.00223 * 0.02562 * 5 4 3 8 8 N 1.30902 * 119.99986 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00323 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47402 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47356 * 300.00176 * 9 7 5 12 12 H 1.48506 * 109.46825 * 60.00160 * 9 7 5 13 13 C 1.41246 * 106.55287 * 0.22179 * 4 3 2 14 14 C 1.35217 * 124.95140 * 180.02562 * 2 1 3 15 15 C 1.50732 * 128.76860 * 0.18614 * 14 2 1 16 16 C 1.53603 * 108.27965 * 162.73041 * 15 14 2 17 17 C 1.53106 * 109.44421 * 50.30042 * 16 15 14 18 18 C 1.50380 * 129.33671 * 179.97438 * 13 4 3 19 19 H 1.09001 * 109.70013 * 43.95205 * 18 13 4 20 20 O 1.42900 * 109.69951 * 283.34452 * 18 13 4 21 21 H 1.08999 * 109.47315 * 89.97467 * 1 2 3 22 22 H 1.09000 * 109.46775 * 209.97456 * 1 2 3 23 23 H 1.08997 * 109.47290 * 329.97019 * 1 2 3 24 24 H 0.97001 * 119.99858 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.68905 * 283.01974 * 15 14 2 26 26 H 1.09003 * 109.68514 * 43.58826 * 15 14 2 27 27 H 1.09003 * 109.70409 * 290.20528 * 16 15 14 28 28 H 1.08996 * 109.34501 * 170.17730 * 16 15 14 29 29 H 1.08997 * 109.47131 * 169.80921 * 17 16 15 30 30 H 1.09005 * 109.46234 * 49.81551 * 17 16 15 31 31 H 0.96703 * 113.99968 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2030 1.0561 0.0000 4 6 3.4894 0.7129 0.0006 5 6 4.5987 1.5901 0.0002 6 1 5.6024 1.1914 0.0003 7 6 4.3960 2.9738 -0.0002 8 7 3.1795 3.4571 -0.0009 9 14 5.8612 4.1325 0.0001 10 1 5.3810 5.5378 -0.0011 11 1 6.6832 3.8908 1.2129 12 1 6.6841 3.8901 -1.2121 13 6 3.5292 -0.6990 -0.0043 14 6 2.2396 -1.1083 -0.0005 15 6 1.8170 -2.5552 -0.0050 16 6 3.0201 -3.4071 -0.4367 17 6 4.2438 -3.0213 0.3986 18 6 4.7186 -1.6191 -0.0064 19 1 5.4606 -1.2621 0.7078 20 8 5.2908 -1.6637 -1.3151 21 1 -0.3634 0.0005 -1.0276 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3634 0.8897 0.5143 24 1 3.0389 4.4168 -0.0008 25 1 1.4895 -2.8452 0.9934 26 1 1.0024 -2.6976 -0.7151 27 1 3.2322 -3.2353 -1.4920 28 1 2.7911 -4.4611 -0.2796 29 1 5.0442 -3.7403 0.2241 30 1 3.9774 -3.0237 1.4556 31 1 6.0641 -2.2399 -1.3868 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261016841.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:17 Heat of formation + Delta-G solvation = -11.629980 kcal Electronic energy + Delta-G solvation = -15534.908912 eV Core-core repulsion = 13009.343916 eV Total energy + Delta-G solvation = -2525.564996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.51489 -38.59929 -35.81999 -35.26334 -33.40297 -30.27108 -29.75182 -29.03484 -25.76825 -23.99694 -22.61866 -21.48236 -19.62291 -18.26777 -17.52487 -17.37849 -16.47951 -16.32950 -15.64204 -14.94480 -14.67953 -14.58070 -14.00223 -13.94558 -13.45366 -13.26293 -12.86952 -12.81491 -12.48539 -12.39156 -12.16694 -11.75764 -11.63076 -11.44562 -11.07854 -10.56757 -10.19904 -9.31361 -8.97000 -8.27566 -6.19669 1.38533 1.40676 1.51804 1.65685 2.32786 2.37934 2.52722 3.57050 3.89070 3.99198 3.99487 4.14385 4.24034 4.43084 4.49290 4.61093 4.65074 4.73103 4.88115 4.99495 5.02589 5.07107 5.24248 5.40537 5.50146 5.62543 5.75558 6.00413 6.45758 6.88828 7.03891 7.21787 7.27798 8.38660 8.72726 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029899 B = 0.011052 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.247435 B = 2532.965826 C = 3344.517488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.340 5.340 3 N -0.380 5.380 4 C 0.165 3.835 5 C -0.478 4.478 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.826 5.826 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.259 1.259 12 H -0.265 1.265 13 C -0.297 4.297 14 C 0.008 3.992 15 C -0.038 4.038 16 C -0.101 4.101 17 C -0.135 4.135 18 C 0.195 3.805 19 H 0.035 0.965 20 O -0.581 6.581 21 H 0.072 0.928 22 H 0.111 0.889 23 H 0.073 0.927 24 H 0.270 0.730 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -12.809 1.098 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.123 5.123 3 N -0.213 5.213 4 C 0.016 3.984 5 C -0.516 4.516 6 H 0.090 0.910 7 C -0.194 4.194 8 N -0.456 5.456 9 Si 0.804 3.196 10 H -0.197 1.197 11 H -0.184 1.184 12 H -0.189 1.189 13 C -0.308 4.308 14 C -0.121 4.121 15 C -0.077 4.077 16 C -0.138 4.138 17 C -0.173 4.173 18 C 0.136 3.864 19 H 0.053 0.947 20 O -0.388 6.388 21 H 0.090 0.910 22 H 0.130 0.870 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.876 -11.286 0.979 11.687 hybrid contribution 1.427 0.193 0.048 1.441 sum -1.449 -11.093 1.027 11.234 Atomic orbital electron populations 1.21879 0.74242 1.04596 1.03286 1.45675 1.07528 1.03167 1.55910 1.74875 1.03436 1.09622 1.33390 1.19451 0.91046 0.91546 0.96344 1.18761 0.91910 0.90883 1.50096 0.91008 1.26720 0.99415 1.00320 0.92958 1.70116 1.23188 1.13489 1.38802 0.85273 0.78094 0.76555 0.79671 1.19749 1.18361 1.18923 1.19957 0.94421 0.93788 1.22685 1.21620 0.91043 0.91957 1.07441 1.20312 0.99153 0.85590 1.02648 1.21473 0.93256 0.99607 0.99507 1.22237 0.99370 0.95229 1.00468 1.19643 0.90550 0.93128 0.83067 0.94748 1.86692 1.48941 1.71309 1.31856 0.90968 0.87020 0.90853 0.92077 0.89064 0.89881 0.92964 0.88029 0.88946 0.91064 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.48 11.18 127.77 1.43 4.91 16 2 N -0.34 -16.64 3.71 -355.82 -1.32 -17.96 16 3 N -0.38 -23.23 10.29 -52.06 -0.54 -23.76 16 4 C 0.16 10.23 6.77 40.47 0.27 10.51 16 5 C -0.48 -29.87 9.34 23.44 0.22 -29.65 16 6 H 0.07 4.32 7.84 -2.91 -0.02 4.30 16 7 C 0.02 1.12 5.49 85.22 0.47 1.59 16 8 N -0.83 -51.29 11.98 21.81 0.26 -51.02 16 9 Si 0.98 44.53 29.56 68.60 2.03 46.56 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 13 C -0.30 -15.29 5.65 -19.90 -0.11 -15.40 16 14 C 0.01 0.38 6.73 41.37 0.28 0.66 16 15 C -0.04 -1.14 5.82 30.06 0.18 -0.97 16 16 C -0.10 -2.66 5.89 30.83 0.18 -2.48 16 17 C -0.14 -3.87 5.58 30.79 0.17 -3.70 16 18 C 0.20 8.02 3.81 29.91 0.11 8.13 16 19 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 20 O -0.58 -23.46 12.95 -148.98 -1.93 -25.39 16 21 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.11 2.81 7.86 -2.39 -0.02 2.79 16 23 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 24 H 0.27 15.37 8.30 -92.71 -0.77 14.60 16 25 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.59 7.80 -2.39 -0.02 1.57 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.98 8.11 -2.38 -0.02 1.96 16 31 H 0.38 10.39 9.10 -74.06 -0.67 9.72 16 Total: -1.00 -83.16 262.08 2.16 -81.00 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.46 Total: 16.98 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.20 Total: -26.39 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -1.60 Total: -92.75 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -1.93 Total: -25.39 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -83.16 2.16 -81.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016841.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.373 kcal (2) G-P(sol) polarization free energy of solvation -83.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds