Wall clock time and date at job start Mon Mar 30 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47434 * 2 1 4 4 C 1.53001 * 109.47108 * 239.99682 * 2 1 3 5 5 C 1.50700 * 109.47025 * 119.99775 * 2 1 3 6 6 N 1.32142 * 118.87247 * 359.97438 * 5 2 1 7 7 C 1.32245 * 121.39071 * 180.02562 * 6 5 2 8 8 C 1.39207 * 119.14704 * 359.97438 * 7 6 5 9 9 O 1.35582 * 121.00280 * 179.97438 * 8 7 6 10 10 C 1.41557 * 117.98862 * 0.02562 * 8 7 6 11 11 C 1.41117 * 120.71942 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99495 * 359.97438 * 11 10 8 13 13 C 1.40158 * 120.00278 * 180.27609 * 11 10 8 14 14 N 1.30684 * 119.99784 * 359.72293 * 13 11 10 15 15 Si 1.86796 * 120.00325 * 179.72399 * 13 11 10 16 16 H 1.48506 * 109.46664 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47152 * 119.99624 * 15 13 11 18 18 H 1.48501 * 109.47172 * 240.00201 * 15 13 11 19 19 N 1.31280 * 118.87687 * 180.30120 * 5 2 1 20 20 H 1.09003 * 109.47215 * 300.00309 * 1 2 3 21 21 H 1.09008 * 109.47079 * 59.99896 * 1 2 3 22 22 H 1.08996 * 109.47615 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47077 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46626 * 299.99808 * 3 2 1 25 25 H 1.08994 * 109.46873 * 59.99665 * 3 2 1 26 26 H 1.08996 * 109.46786 * 300.00390 * 4 2 1 27 27 H 1.08998 * 109.46817 * 60.00268 * 4 2 1 28 28 H 1.08999 * 109.46873 * 180.02562 * 4 2 1 29 29 H 1.08003 * 120.42946 * 180.02562 * 7 6 5 30 30 H 0.96692 * 114.00112 * 270.02784 * 9 8 7 31 31 H 0.96995 * 119.99826 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.1540 -1.2035 2.0858 7 6 1.5396 -1.8355 3.1816 8 6 2.9002 -1.9830 3.4360 9 8 3.3373 -2.6238 4.5480 10 6 3.8136 -1.4428 2.4991 11 6 5.2056 -1.5588 2.7001 12 1 5.5843 -2.0637 3.5764 13 6 6.0965 -1.0132 1.7657 14 7 5.6381 -0.4018 0.7055 15 14 7.9390 -1.1600 2.0356 16 1 8.1969 -1.8913 3.3021 17 1 8.5477 -1.9019 0.9023 18 1 8.5370 0.1968 2.1174 19 7 3.3274 -0.8124 1.4193 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1301 1.4425 -0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6766 -1.7489 -1.2491 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7217 -1.2489 29 1 0.8083 -2.2329 3.8699 30 1 3.4643 -2.0443 5.3116 31 1 6.2546 -0.0246 0.0587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261018628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:31 Heat of formation + Delta-G solvation = -18.845758 kcal Electronic energy + Delta-G solvation = -15450.363683 eV Core-core repulsion = 12924.485788 eV Total energy + Delta-G solvation = -2525.877895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.32211 -36.64216 -34.98528 -33.99084 -31.41686 -28.82837 -26.86408 -26.50245 -25.90562 -22.54211 -22.03254 -18.97914 -17.48327 -16.94900 -16.09149 -15.04982 -14.69512 -14.10475 -13.53447 -13.22785 -13.14985 -12.71106 -12.29337 -11.58263 -11.49210 -11.39889 -11.34727 -10.93902 -10.88036 -10.58986 -10.40936 -10.20108 -10.09188 -9.94909 -9.82878 -9.31564 -8.64718 -7.68270 -7.33122 -6.48751 -4.79474 2.50266 2.78481 3.00840 3.05827 3.17211 3.82283 4.63866 5.14863 5.42315 5.54436 5.66088 5.90346 5.96311 6.03390 6.22730 6.29533 6.44860 6.50017 6.55361 6.56542 6.72337 6.84419 6.91654 7.01048 7.10411 7.15581 7.26310 7.78804 8.01392 8.23617 8.60880 8.86185 9.09183 10.03626 10.16171 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026077 B = 0.011828 C = 0.008622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.477172 B = 2366.763938 C = 3246.637560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.011 3.989 3 C -0.128 4.128 4 C -0.129 4.129 5 C 0.313 3.687 6 N -0.608 5.608 7 C 0.119 3.881 8 C -0.125 4.125 9 O -0.486 6.486 10 C 0.250 3.750 11 C -0.404 4.404 12 H 0.092 0.908 13 C 0.067 3.933 14 N -0.700 5.700 15 Si 0.912 3.088 16 H -0.258 1.258 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.497 5.497 20 H 0.054 0.946 21 H 0.040 0.960 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.353 0.647 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 2.334 -1.033 3.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.009 3.991 3 C -0.186 4.186 4 C -0.187 4.187 5 C 0.042 3.958 6 N -0.333 5.333 7 C -0.041 4.041 8 C -0.178 4.178 9 O -0.290 6.290 10 C 0.121 3.879 11 C -0.437 4.437 12 H 0.110 0.890 13 C -0.160 4.160 14 N -0.321 5.321 15 Si 0.735 3.265 16 H -0.182 1.182 17 H -0.196 1.196 18 H -0.197 1.197 19 N -0.217 5.217 20 H 0.073 0.927 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.146 0.854 30 H 0.205 0.795 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.984 2.374 -2.342 3.880 hybrid contribution 1.124 -0.177 1.360 1.774 sum -0.860 2.197 -0.982 2.555 Atomic orbital electron populations 1.21617 0.94304 1.01701 1.00040 1.19032 0.94606 0.94500 0.90935 1.21752 1.02940 0.94089 0.99842 1.21757 1.02935 0.98887 0.95098 1.22557 0.87015 0.92626 0.93589 1.67900 1.39861 1.19321 1.06196 1.22704 0.92905 0.93909 0.94552 1.20178 0.93073 1.11233 0.93345 1.84761 1.88412 1.35935 1.19923 1.19114 0.93937 0.87503 0.87335 1.19649 0.89211 1.28631 1.06208 0.88978 1.26178 1.01662 0.93755 0.94446 1.70090 1.36462 1.19592 1.05920 0.86195 0.81397 0.79015 0.79874 1.18193 1.19605 1.19665 1.69116 1.11950 1.20104 1.20571 0.92690 0.94048 0.92664 0.90655 0.93524 0.93863 0.93826 0.93489 0.90668 0.85386 0.79525 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 7.66 37.16 0.28 -1.84 16 2 C 0.01 0.23 0.92 -155.66 -0.14 0.09 16 3 C -0.13 -2.42 8.36 37.16 0.31 -2.11 16 4 C -0.13 -2.46 8.37 37.16 0.31 -2.15 16 5 C 0.31 7.69 6.26 -157.33 -0.98 6.71 16 6 N -0.61 -14.83 8.96 -10.63 -0.10 -14.93 16 7 C 0.12 2.84 11.28 -17.01 -0.19 2.65 16 8 C -0.12 -3.14 6.81 -37.96 -0.26 -3.40 16 9 O -0.49 -10.94 12.79 -18.44 -0.24 -11.17 16 10 C 0.25 6.81 6.59 -84.50 -0.56 6.25 16 11 C -0.40 -10.60 9.00 -37.77 -0.34 -10.94 16 12 H 0.09 2.32 7.42 -52.49 -0.39 1.94 16 13 C 0.07 1.64 5.50 -17.32 -0.10 1.55 16 14 N -0.70 -17.51 11.52 55.56 0.64 -16.87 16 15 Si 0.91 17.94 29.56 -169.99 -5.02 12.91 16 16 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 19 N -0.50 -13.28 7.37 -8.61 -0.06 -13.35 16 20 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 21 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 22 H 0.05 1.02 8.03 -51.93 -0.42 0.60 16 23 H 0.07 1.59 8.00 -51.93 -0.42 1.17 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.60 8.01 -51.93 -0.42 1.18 16 29 H 0.13 2.65 8.06 -52.48 -0.42 2.23 16 30 H 0.35 6.29 9.06 45.56 0.41 6.71 16 31 H 0.28 6.20 8.29 -40.82 -0.34 5.87 16 LS Contribution 267.85 15.07 4.04 4.04 Total: -1.00 -29.28 267.85 -5.72 -34.99 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.31 Total: 7.57 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.66 Total: -3.19 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.48 Total: -45.15 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.24 Total: -11.17 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.28 -5.72 -34.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.149 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds