Wall clock time and date at job start Mon Mar 30 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47434 * 2 1 4 4 C 1.53001 * 109.47108 * 239.99682 * 2 1 3 5 5 C 1.50700 * 109.47025 * 119.99775 * 2 1 3 6 6 N 1.32142 * 118.87247 * 359.97438 * 5 2 1 7 7 C 1.32245 * 121.39071 * 180.02562 * 6 5 2 8 8 C 1.39207 * 119.14704 * 359.97438 * 7 6 5 9 9 O 1.35582 * 121.00280 * 179.97438 * 8 7 6 10 10 C 1.41557 * 117.98862 * 0.02562 * 8 7 6 11 11 C 1.41117 * 120.71942 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99495 * 359.97438 * 11 10 8 13 13 C 1.40158 * 120.00278 * 180.27609 * 11 10 8 14 14 N 1.30684 * 119.99784 * 359.72293 * 13 11 10 15 15 Si 1.86796 * 120.00325 * 179.72399 * 13 11 10 16 16 H 1.48506 * 109.46664 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47152 * 119.99624 * 15 13 11 18 18 H 1.48501 * 109.47172 * 240.00201 * 15 13 11 19 19 N 1.31280 * 118.87687 * 180.30120 * 5 2 1 20 20 H 1.09003 * 109.47215 * 300.00309 * 1 2 3 21 21 H 1.09008 * 109.47079 * 59.99896 * 1 2 3 22 22 H 1.08996 * 109.47615 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47077 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46626 * 299.99808 * 3 2 1 25 25 H 1.08994 * 109.46873 * 59.99665 * 3 2 1 26 26 H 1.08996 * 109.46786 * 300.00390 * 4 2 1 27 27 H 1.08998 * 109.46817 * 60.00268 * 4 2 1 28 28 H 1.08999 * 109.46873 * 180.02562 * 4 2 1 29 29 H 1.08003 * 120.42946 * 180.02562 * 7 6 5 30 30 H 0.96692 * 114.00112 * 270.02784 * 9 8 7 31 31 H 0.96995 * 119.99826 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.1540 -1.2035 2.0858 7 6 1.5396 -1.8355 3.1816 8 6 2.9002 -1.9830 3.4360 9 8 3.3373 -2.6238 4.5480 10 6 3.8136 -1.4428 2.4991 11 6 5.2056 -1.5588 2.7001 12 1 5.5843 -2.0637 3.5764 13 6 6.0965 -1.0132 1.7657 14 7 5.6381 -0.4018 0.7055 15 14 7.9390 -1.1600 2.0356 16 1 8.1969 -1.8913 3.3021 17 1 8.5477 -1.9019 0.9023 18 1 8.5370 0.1968 2.1174 19 7 3.3274 -0.8124 1.4193 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1301 1.4425 -0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6766 -1.7489 -1.2491 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7217 -1.2489 29 1 0.8083 -2.2329 3.8699 30 1 3.4643 -2.0443 5.3116 31 1 6.2546 -0.0246 0.0587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261018628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:31 Heat of formation + Delta-G solvation = -38.400231 kcal Electronic energy + Delta-G solvation = -15451.211629 eV Core-core repulsion = 12924.485788 eV Total energy + Delta-G solvation = -2526.725841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.16823 -38.37293 -36.69367 -35.83855 -33.31929 -30.69327 -28.55667 -28.02580 -27.58866 -24.37247 -23.89834 -20.69007 -19.34341 -18.78266 -17.91375 -16.86459 -16.35098 -15.92788 -15.16747 -14.92170 -14.76131 -14.39063 -14.03998 -13.23922 -13.04954 -12.95468 -12.87819 -12.76088 -12.43050 -12.19996 -12.07164 -11.81266 -11.75022 -11.62654 -11.57429 -11.15875 -10.54556 -9.57575 -9.21344 -8.33938 -6.75015 0.64026 0.96406 1.39105 1.52624 1.54445 2.17596 2.78523 3.47042 3.63409 3.87508 3.89134 4.27049 4.30410 4.42690 4.56027 4.87905 4.90162 4.93995 5.00582 5.05754 5.15170 5.15989 5.18481 5.35539 5.35827 5.56488 5.70844 5.95299 6.07195 6.40403 6.71123 7.00540 7.26569 8.18191 8.31066 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026077 B = 0.011828 C = 0.008622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.477172 B = 2366.763938 C = 3246.637560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.004 3.996 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.296 3.704 6 N -0.613 5.613 7 C 0.114 3.886 8 C -0.141 4.141 9 O -0.490 6.490 10 C 0.212 3.788 11 C -0.431 4.431 12 H 0.092 0.908 13 C 0.025 3.975 14 N -0.727 5.727 15 Si 0.990 3.010 16 H -0.257 1.257 17 H -0.265 1.265 18 H -0.261 1.261 19 N -0.518 5.518 20 H 0.046 0.954 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.159 0.841 30 H 0.375 0.625 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 2.833 -1.590 3.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.002 3.998 3 C -0.176 4.176 4 C -0.177 4.177 5 C 0.025 3.975 6 N -0.337 5.337 7 C -0.046 4.046 8 C -0.194 4.194 9 O -0.296 6.296 10 C 0.083 3.917 11 C -0.464 4.464 12 H 0.110 0.890 13 C -0.200 4.200 14 N -0.348 5.348 15 Si 0.810 3.190 16 H -0.180 1.180 17 H -0.189 1.189 18 H -0.186 1.186 19 N -0.239 5.239 20 H 0.065 0.935 21 H 0.096 0.904 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.176 0.824 30 H 0.229 0.771 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.993 2.879 -2.888 4.538 hybrid contribution 1.067 -0.341 1.563 1.923 sum -0.925 2.537 -1.324 3.008 Atomic orbital electron populations 1.21528 0.92117 1.01500 1.01443 1.19294 0.96309 0.94760 0.89464 1.21652 1.01011 0.93586 1.01357 1.21665 1.00987 0.98839 0.96229 1.23460 0.86698 0.92441 0.94891 1.68015 1.39743 1.19499 1.06411 1.23172 0.93164 0.93439 0.94861 1.20265 0.93490 1.11611 0.94069 1.84670 1.88331 1.36522 1.20081 1.19650 0.95111 0.88492 0.88410 1.19939 0.89668 1.29703 1.07094 0.88983 1.27060 1.06318 0.92932 0.93727 1.70149 1.38561 1.19594 1.06528 0.85030 0.74871 0.79339 0.79759 1.18023 1.18918 1.18580 1.69143 1.13086 1.20806 1.20882 0.93472 0.90397 0.93649 0.93522 0.89713 0.94524 0.94727 0.89616 0.93569 0.82406 0.77138 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.62 7.66 71.98 0.55 -3.07 16 2 C 0.00 0.15 0.92 -52.93 -0.05 0.10 16 3 C -0.12 -4.32 8.36 71.98 0.60 -3.72 16 4 C -0.12 -4.43 8.37 71.98 0.60 -3.82 16 5 C 0.30 14.64 6.26 138.80 0.87 15.50 16 6 N -0.61 -29.80 8.96 -187.54 -1.68 -31.48 16 7 C 0.11 5.39 11.28 84.86 0.96 6.35 16 8 C -0.14 -7.17 6.81 23.32 0.16 -7.01 16 9 O -0.49 -21.98 12.79 -88.90 -1.14 -23.11 16 10 C 0.21 11.83 6.59 40.31 0.27 12.09 16 11 C -0.43 -23.06 9.00 23.44 0.21 -22.85 16 12 H 0.09 4.73 7.42 -2.91 -0.02 4.71 16 13 C 0.02 1.21 5.50 85.33 0.47 1.68 16 14 N -0.73 -36.95 11.52 21.86 0.25 -36.70 16 15 Si 0.99 36.61 29.56 68.60 2.03 38.64 16 16 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 17 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 18 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 19 N -0.52 -28.35 7.37 -181.15 -1.33 -29.68 16 20 H 0.05 1.63 8.04 -2.39 -0.02 1.61 16 21 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 22 H 0.04 1.59 8.03 -2.39 -0.02 1.57 16 23 H 0.05 1.96 8.00 -2.39 -0.02 1.94 16 24 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 1.97 8.01 -2.39 -0.02 1.95 16 29 H 0.16 6.33 8.06 -2.91 -0.02 6.31 16 30 H 0.37 13.19 9.06 -74.06 -0.67 12.51 16 31 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 Total: -1.00 -63.88 267.85 3.23 -60.66 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.46 Total: 26.43 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 4.64 Total: -4.75 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -2.76 Total: -97.86 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -1.14 Total: -23.11 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Total: -63.88 3.23 -60.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.255 kcal (2) G-P(sol) polarization free energy of solvation -63.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds