Wall clock time and date at job start Mon Mar 30 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40288 * 126.13583 * 2 1 4 4 H 0.96998 * 125.92881 * 0.06976 * 3 2 1 5 5 C 1.36122 * 108.12959 * 180.02562 * 3 2 1 6 6 C 1.35304 * 108.44614 * 359.89665 * 5 3 2 7 7 C 1.35056 * 126.13668 * 180.02562 * 2 1 3 8 8 O 1.21782 * 126.23889 * 0.02562 * 7 2 1 9 9 C 1.50866 * 124.22933 * 180.10291 * 6 5 3 10 10 C 1.53345 * 108.41410 * 16.49061 * 9 6 5 11 11 H 1.09000 * 109.47494 * 70.14294 * 10 9 6 12 12 C 1.50702 * 109.47642 * 190.15849 * 10 9 6 13 13 H 1.08004 * 120.00212 * 119.97578 * 12 10 9 14 14 C 1.37881 * 119.99714 * 299.98133 * 12 10 9 15 15 N 1.31510 * 120.00090 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 119.99902 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47183 * 89.99443 * 16 14 12 18 18 H 1.48504 * 109.47076 * 209.99769 * 16 14 12 19 19 H 1.48507 * 109.47117 * 329.99465 * 16 14 12 20 20 C 1.53116 * 109.45134 * 310.14908 * 10 9 6 21 21 C 1.50946 * 127.50988 * 179.78991 * 5 3 2 22 22 H 1.08993 * 109.47659 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47291 * 119.97996 * 1 2 3 24 24 H 1.09006 * 109.47198 * 239.97665 * 1 2 3 25 25 H 1.09002 * 109.67390 * 256.75371 * 9 6 5 26 26 H 1.09000 * 109.67239 * 136.22217 * 9 6 5 27 27 H 0.97001 * 120.00307 * 180.02562 * 15 14 12 28 28 H 1.08996 * 109.47442 * 190.19998 * 20 10 9 29 29 H 1.09000 * 109.47003 * 310.19801 * 20 10 9 30 30 H 1.09008 * 109.67259 * 76.99675 * 21 5 3 31 31 H 1.08997 * 109.67569 * 316.46664 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2922 1.1330 0.0000 4 1 1.9935 2.0558 0.0010 5 6 3.5868 0.7122 -0.0006 6 6 3.5972 -0.6408 0.0014 7 6 2.2614 -1.0907 -0.0005 8 8 1.8927 -2.2514 -0.0014 9 6 4.8510 -1.4798 0.0037 10 6 6.0291 -0.5892 0.4164 11 1 5.9384 -0.3327 1.4719 12 6 7.3222 -1.3287 0.1883 13 1 8.0625 -0.9263 -0.4873 14 6 7.5600 -2.5192 0.8420 15 7 6.6587 -3.0090 1.6649 16 14 9.1631 -3.4356 0.5598 17 1 10.1749 -2.9784 1.5460 18 1 8.9353 -4.8938 0.7241 19 1 9.6537 -3.1630 -0.8152 20 6 6.0186 0.6915 -0.4228 21 6 4.8310 1.5668 -0.0052 22 1 -0.3634 1.0276 0.0005 23 1 -0.3634 -0.5135 -0.8902 24 1 -0.3634 -0.5142 0.8898 25 1 5.0261 -1.8808 -0.9947 26 1 4.7432 -2.2988 0.7149 27 1 6.8262 -3.8463 2.1251 28 1 6.9475 1.2387 -0.2623 29 1 5.9265 0.4337 -1.4779 30 1 5.0042 1.9682 0.9934 31 1 4.7112 2.3856 -0.7146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:19 Heat of formation + Delta-G solvation = 6.946104 kcal Electronic energy + Delta-G solvation = -15308.105100 eV Core-core repulsion = 12783.345624 eV Total energy + Delta-G solvation = -2524.759476 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.60313 -38.45057 -37.65711 -34.71589 -33.08956 -31.88713 -29.96614 -28.14373 -26.41344 -23.92460 -22.56243 -21.59549 -19.77891 -18.75550 -18.26713 -17.08567 -16.64016 -16.47058 -16.03411 -15.26210 -14.56745 -14.34800 -14.23396 -13.94334 -13.58570 -13.55087 -13.28010 -12.92922 -12.79085 -12.39514 -12.30560 -12.15811 -11.44582 -11.11089 -10.81754 -10.49197 -10.38718 -9.86286 -8.62707 -7.99897 -6.15101 0.70462 0.79522 1.43952 1.46315 1.55876 2.29147 2.48939 2.85460 3.27932 3.81817 4.07660 4.26940 4.40415 4.43331 4.55948 4.68072 4.80140 4.96469 5.04581 5.08600 5.11957 5.20840 5.41725 5.51304 5.67498 5.76250 6.06260 6.21134 6.26860 6.45185 6.79150 7.00957 7.32255 7.53721 9.04190 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042579 B = 0.008266 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.438219 B = 3386.701084 C = 3913.886946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.426 5.426 3 N -0.465 5.465 4 H 0.462 0.538 5 C 0.205 3.795 6 C -0.353 4.353 7 C 0.508 3.492 8 O -0.616 6.616 9 C -0.004 4.004 10 C 0.046 3.954 11 H 0.000 1.000 12 C -0.531 4.531 13 H 0.063 0.937 14 C 0.005 3.995 15 N -0.921 5.921 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.293 1.293 19 H -0.264 1.264 20 C -0.100 4.100 21 C -0.048 4.048 22 H 0.129 0.871 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.037 0.963 27 H 0.256 0.744 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 15.628 -3.683 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.247 5.247 3 N -0.190 5.190 4 H 0.313 0.687 5 C 0.086 3.914 6 C -0.365 4.365 7 C 0.308 3.692 8 O -0.501 6.501 9 C -0.043 4.043 10 C 0.027 3.973 11 H 0.018 0.982 12 C -0.569 4.569 13 H 0.081 0.919 14 C -0.194 4.194 15 N -0.561 5.561 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.219 1.219 19 H -0.188 1.188 20 C -0.138 4.138 21 C -0.086 4.086 22 H 0.147 0.853 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.032 0.968 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.542 14.928 -3.573 18.074 hybrid contribution 0.398 -1.084 0.166 1.167 sum -9.145 13.844 -3.407 16.938 Atomic orbital electron populations 1.22101 0.72166 1.06057 1.03518 1.48411 1.04989 0.98907 1.72429 1.43565 0.99638 1.01837 1.73985 0.68748 1.21239 0.85594 0.93795 0.90801 1.20820 0.95350 0.95702 1.24657 1.17118 0.88006 0.83830 0.80211 1.90733 1.81508 1.18501 1.59396 1.19603 0.90134 0.97296 0.97307 1.18720 0.92056 0.92353 0.94148 0.98171 1.21670 1.03052 1.06572 1.25640 0.91894 1.25872 0.99719 0.98646 0.95118 1.70128 1.35767 1.20564 1.29640 0.85629 0.80204 0.77306 0.78956 1.19660 1.21944 1.18796 1.21558 0.97177 0.95724 0.99370 1.20734 0.86332 0.96428 1.05119 0.85276 0.90602 0.90976 0.96803 0.94404 0.93515 0.90211 0.92892 0.87385 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.00 11.39 127.77 1.46 3.45 16 2 N -0.43 -13.18 4.02 -493.95 -1.99 -15.17 16 3 N -0.47 -10.84 7.28 -47.19 -0.34 -11.18 16 4 H 0.46 5.23 8.96 -213.20 -1.91 3.32 16 5 C 0.20 6.50 7.09 41.29 0.29 6.79 16 6 C -0.35 -16.13 5.94 -19.82 -0.12 -16.24 16 7 C 0.51 23.42 7.92 84.86 0.67 24.09 16 8 O -0.62 -34.24 17.92 -4.61 -0.08 -34.32 16 9 C 0.00 -0.24 5.16 30.02 0.15 -0.08 16 10 C 0.05 2.31 2.07 -11.38 -0.02 2.29 16 11 H 0.00 0.01 8.11 -2.39 -0.02 -0.01 16 12 C -0.53 -29.69 8.52 25.60 0.22 -29.47 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 0.27 5.30 84.66 0.45 0.72 16 15 N -0.92 -57.81 11.47 21.45 0.25 -57.56 16 16 Si 0.95 45.42 29.54 68.60 2.03 47.44 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 19 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 20 C -0.10 -3.60 5.15 30.74 0.16 -3.44 16 21 C -0.05 -1.19 6.30 30.04 0.19 -1.00 16 22 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.01 0.78 8.12 -2.39 -0.02 0.76 16 26 H 0.04 2.45 6.45 -2.39 -0.02 2.43 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 29 H 0.05 1.92 8.11 -2.39 -0.02 1.90 16 30 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -85.21 261.03 2.53 -82.68 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -0.77 Total: 1.00 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 3.45 Total: -12.89 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -2.09 Total: -83.91 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.08 Total: -34.32 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -85.21 2.53 -82.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.624 kcal (2) G-P(sol) polarization free energy of solvation -85.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds