Wall clock time and date at job start Mon Mar 30 2020 03:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40287 * 126.13509 * 2 1 4 4 H 0.96996 * 125.93212 * 0.19473 * 3 2 1 5 5 C 1.36125 * 108.13092 * 179.97438 * 3 2 1 6 6 C 1.35300 * 108.43888 * 0.08899 * 5 3 2 7 7 C 1.35049 * 126.13586 * 179.97438 * 2 1 3 8 8 O 1.21778 * 126.24167 * 0.02562 * 7 2 1 9 9 C 1.50873 * 124.22311 * 179.87865 * 6 5 3 10 10 C 1.53349 * 108.41226 * 343.50158 * 9 6 5 11 11 H 1.08997 * 109.47227 * 289.86105 * 10 9 6 12 12 C 1.50700 * 109.46977 * 169.85351 * 10 9 6 13 13 H 1.08005 * 119.99790 * 239.99605 * 12 10 9 14 14 C 1.37871 * 120.00465 * 60.00199 * 12 10 9 15 15 N 1.31515 * 120.00055 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00173 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47160 * 89.99871 * 16 14 12 18 18 H 1.48500 * 109.47019 * 209.99806 * 16 14 12 19 19 H 1.48500 * 109.47157 * 329.99461 * 16 14 12 20 20 C 1.53119 * 109.44697 * 49.86032 * 10 9 6 21 21 C 1.50941 * 127.51034 * 180.17499 * 5 3 2 22 22 H 1.09010 * 109.47314 * 0.02804 * 1 2 3 23 23 H 1.09001 * 109.47229 * 120.02188 * 1 2 3 24 24 H 1.08998 * 109.47362 * 240.02878 * 1 2 3 25 25 H 1.09000 * 109.67043 * 103.23421 * 9 6 5 26 26 H 1.09008 * 109.67270 * 223.76753 * 9 6 5 27 27 H 0.97001 * 120.00217 * 180.02562 * 15 14 12 28 28 H 1.08998 * 109.46895 * 49.81015 * 20 10 9 29 29 H 1.09002 * 109.46106 * 169.80113 * 20 10 9 30 30 H 1.09001 * 109.67791 * 283.04013 * 21 5 3 31 31 H 1.08998 * 109.67883 * 43.57199 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2923 1.1330 0.0000 4 1 1.9936 2.0558 0.0027 5 6 3.5869 0.7123 0.0006 6 6 3.5971 -0.6407 -0.0011 7 6 2.2614 -1.0907 0.0005 8 8 1.8927 -2.2513 0.0006 9 6 4.8510 -1.4797 -0.0037 10 6 6.0289 -0.5892 -0.4173 11 1 5.9376 -0.3330 -1.4728 12 6 7.3220 -1.3288 -0.1897 13 1 8.0629 -0.9261 0.4851 14 6 7.5594 -2.5195 -0.8430 15 7 6.6570 -3.0102 -1.6643 16 14 9.1626 -3.4360 -0.5614 17 1 9.0012 -4.3781 0.5750 18 1 9.5207 -4.1949 -1.7865 19 1 10.2404 -2.4634 -0.2489 20 6 6.0188 0.6916 0.4217 21 6 4.8310 1.5669 0.0045 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3634 -0.5142 -0.8898 24 1 -0.3634 -0.5134 0.8902 25 1 5.0266 -1.8803 0.9948 26 1 4.7429 -2.2990 -0.7145 27 1 6.8239 -3.8481 -2.1237 28 1 5.9275 0.4340 1.4769 29 1 6.9477 1.2388 0.2604 30 1 5.0037 1.9682 -0.9941 31 1 4.7116 2.3857 0.7139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:21 Heat of formation + Delta-G solvation = 32.486187 kcal Electronic energy + Delta-G solvation = -15307.215032 eV Core-core repulsion = 12783.563057 eV Total energy + Delta-G solvation = -2523.651975 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.10412 -36.79916 -35.99121 -32.91600 -31.53994 -30.28464 -28.26994 -26.74749 -24.49287 -22.41109 -20.89883 -20.02660 -18.14731 -17.35350 -16.24141 -15.63547 -15.09792 -14.58792 -14.44716 -13.71810 -13.00539 -12.91890 -12.70858 -12.47600 -12.22793 -11.86811 -11.71359 -11.13235 -10.94640 -10.78509 -10.47338 -10.16000 -9.68535 -9.25588 -8.98788 -8.62190 -8.49938 -8.24976 -7.00612 -5.86480 -3.93731 2.05746 2.19678 3.39362 3.46203 3.47771 3.95952 4.17980 4.53298 4.95369 5.12786 5.32082 5.43282 5.52268 5.55860 5.73002 6.01397 6.10289 6.42426 6.53441 6.62187 6.71011 6.94844 7.21761 7.29215 7.53051 7.74733 7.86854 7.99876 8.10739 8.29952 8.53965 8.89037 9.09932 9.70897 11.19419 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042577 B = 0.008267 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.481362 B = 3386.297532 C = 3913.751542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.434 5.434 3 N -0.509 5.509 4 H 0.430 0.570 5 C 0.157 3.843 6 C -0.278 4.278 7 C 0.533 3.467 8 O -0.553 6.553 9 C -0.021 4.021 10 C 0.049 3.951 11 H 0.028 0.972 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.884 5.884 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.105 4.105 21 C -0.056 4.056 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.260 0.740 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 11.531 2.906 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.259 5.259 3 N -0.233 5.233 4 H 0.274 0.726 5 C 0.044 3.956 6 C -0.290 4.290 7 C 0.332 3.668 8 O -0.432 6.432 9 C -0.060 4.060 10 C 0.031 3.969 11 H 0.046 0.954 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.143 4.143 21 C -0.094 4.094 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.121 10.721 2.776 14.348 hybrid contribution 0.340 0.038 0.091 0.354 sum -8.782 10.760 2.867 14.181 Atomic orbital electron populations 1.21667 0.75707 1.02503 1.03231 1.48440 1.03321 0.99481 1.74625 1.43512 1.00954 1.01030 1.77853 0.72575 1.20990 0.83529 0.95334 0.95796 1.21221 0.96376 0.93535 1.17852 1.17057 0.87040 0.83404 0.79263 1.90802 1.80488 1.16033 1.55912 1.20125 0.87018 0.97922 1.00913 1.18753 0.93670 0.89773 0.94714 0.95399 1.21136 1.01820 1.06313 1.26364 0.92599 1.24989 0.96442 0.97407 0.95066 1.69922 1.33797 1.20174 1.28313 0.86653 0.84104 0.79980 0.77573 1.20734 1.21376 1.20031 1.21704 0.94075 0.97825 1.00721 1.20593 0.90150 0.96593 1.02114 0.90619 0.90927 0.90974 0.93579 0.88746 0.92975 0.92684 0.91926 0.89894 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.27 11.39 59.85 0.68 1.95 16 2 N -0.43 -7.20 4.02 -70.17 -0.28 -7.48 16 3 N -0.51 -7.15 7.28 33.73 0.25 -6.91 16 4 H 0.43 3.99 8.96 -182.46 -1.64 2.36 16 5 C 0.16 2.73 7.09 -81.62 -0.58 2.15 16 6 C -0.28 -6.19 5.94 -104.56 -0.62 -6.81 16 7 C 0.53 11.92 7.92 -15.11 -0.12 11.80 16 8 O -0.55 -14.33 17.92 5.12 0.09 -14.24 16 9 C -0.02 -0.54 5.16 -27.62 -0.14 -0.69 16 10 C 0.05 1.22 2.07 -91.53 -0.19 1.03 16 11 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 12 C -0.52 -14.12 8.52 -34.44 -0.29 -14.41 16 13 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 15 N -0.88 -26.11 11.46 55.43 0.64 -25.48 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.11 -2.01 5.15 -26.50 -0.14 -2.15 16 21 C -0.06 -0.84 6.30 -27.59 -0.17 -1.01 16 22 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 1.22 8.12 -51.93 -0.42 0.80 16 26 H 0.09 2.79 6.45 -51.92 -0.33 2.45 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.05 1.05 8.11 -51.93 -0.42 0.63 16 29 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 261.02 15.07 3.93 3.93 Total: -1.00 -34.40 261.02 -7.38 -41.78 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.31 Total: -1.65 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.67 Total: -6.47 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.60 Total: -39.87 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.40 -7.38 -41.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.265 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds