Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47229 * 2 1 4 4 C 1.50699 * 109.47577 * 240.00018 * 2 1 3 5 5 H 1.08005 * 119.99696 * 245.46760 * 4 2 1 6 6 C 1.37878 * 119.99948 * 65.45622 * 4 2 1 7 7 N 1.31507 * 119.99691 * 9.58777 * 6 4 2 8 8 Si 1.86798 * 120.00042 * 189.58187 * 6 4 2 9 9 H 1.48499 * 109.47354 * 84.99393 * 8 6 4 10 10 H 1.48503 * 109.47348 * 204.99963 * 8 6 4 11 11 H 1.48506 * 109.46949 * 324.99685 * 8 6 4 12 12 N 1.46502 * 109.47113 * 119.99942 * 2 1 3 13 13 C 1.38697 * 125.98760 * 59.97345 * 12 2 1 14 14 C 1.32859 * 107.91885 * 180.02562 * 13 12 2 15 15 N 1.38697 * 107.91488 * 0.02562 * 14 13 12 16 16 C 1.46496 * 125.98727 * 180.02562 * 15 14 13 17 17 C 1.53006 * 117.49544 * 300.01427 * 16 15 14 18 18 C 1.53005 * 60.03195 * 107.50039 * 17 16 15 19 19 C 1.34761 * 108.03138 * 0.25259 * 15 14 13 20 20 O 1.21796 * 125.94535 * 179.73714 * 19 15 14 21 21 H 1.09000 * 109.47368 * 303.42176 * 1 2 3 22 22 H 1.09003 * 109.47471 * 63.42592 * 1 2 3 23 23 H 1.09008 * 109.47004 * 183.41826 * 1 2 3 24 24 H 0.97013 * 119.99687 * 179.97438 * 7 6 4 25 25 H 1.07999 * 126.03599 * 0.02562 * 13 12 2 26 26 H 1.07994 * 126.04724 * 179.97438 * 14 13 12 27 27 H 1.09000 * 115.56766 * 154.33387 * 16 15 14 28 28 H 1.09007 * 117.49802 * 0.02562 * 17 16 15 29 29 H 1.08992 * 117.50204 * 214.99769 * 17 16 15 30 30 H 1.09000 * 117.49696 * 107.47490 * 18 17 16 31 31 H 1.08998 * 117.50368 * 252.47655 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.2997 1.0357 -2.5935 8 14 2.1755 -1.1783 -4.0101 9 1 1.0233 -2.0610 -4.3238 10 1 2.4225 -0.2618 -5.1522 11 1 3.3838 -2.0079 -3.7709 12 7 2.0183 -0.6906 1.1962 13 6 1.7605 -2.0099 1.5379 14 6 2.3754 -2.2618 2.6884 15 7 3.0278 -1.1041 3.0859 16 6 3.8295 -0.9418 4.3012 17 6 3.1316 -1.1703 5.6435 18 6 4.1358 -2.1989 5.1193 19 6 2.7908 -0.1532 2.1608 20 8 3.2056 0.9916 2.1898 21 1 -0.3634 0.5660 0.8577 22 1 -0.3634 0.4597 -0.9191 23 1 -0.3633 -1.0259 0.0613 24 1 1.1328 1.4109 -3.4724 25 1 1.1650 -2.7088 0.9693 26 1 2.3680 -3.2015 3.2205 27 1 4.5976 -0.1696 4.2584 28 1 2.0761 -1.4419 5.6223 29 1 3.4404 -0.5484 6.4836 30 1 5.1054 -2.2531 5.6143 31 1 3.7410 -3.1467 4.7536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261044194.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = 44.239630 kcal Electronic energy + Delta-G solvation = -15154.499675 eV Core-core repulsion = 12631.357368 eV Total energy + Delta-G solvation = -2523.142308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.47832 -37.29139 -35.88692 -34.52586 -32.10322 -29.48385 -27.91141 -25.27617 -23.14753 -22.65808 -22.04069 -19.87866 -19.42159 -17.21280 -16.32791 -15.61147 -15.24575 -14.64791 -14.40146 -14.25563 -13.65699 -12.89475 -12.53752 -12.32674 -11.96607 -11.62556 -11.49602 -11.29976 -11.07771 -10.82737 -10.63416 -10.53528 -10.41161 -10.17217 -9.43627 -9.39876 -8.65537 -8.51519 -6.91012 -6.17797 -4.24088 2.86607 2.94341 3.24276 3.31036 3.34072 3.59964 4.02118 4.27263 4.41283 4.66658 4.88430 4.96227 5.14467 5.41371 5.54738 5.76967 5.89641 6.00834 6.06081 6.23242 6.43104 6.62344 6.77926 6.88475 7.15913 7.41850 7.55682 7.69204 7.91772 8.03249 8.39646 8.77465 9.20750 9.42691 10.89520 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.047950 B = 0.007314 C = 0.007053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.797122 B = 3827.272537 C = 3968.929902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.271 3.729 3 H 0.069 0.931 4 C -0.534 4.534 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.504 5.504 13 C 0.034 3.966 14 C -0.068 4.068 15 N -0.513 5.513 16 C 0.100 3.900 17 C -0.190 4.190 18 C -0.180 4.180 19 C 0.643 3.357 20 O -0.585 6.585 21 H 0.020 0.980 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.266 0.734 25 H 0.172 0.828 26 H 0.166 0.834 27 H 0.134 0.866 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 -8.227 11.368 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.172 3.828 3 H 0.087 0.913 4 C -0.572 4.572 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.219 5.219 13 C -0.093 4.093 14 C -0.190 4.190 15 N -0.233 5.233 16 C -0.005 4.005 17 C -0.229 4.229 18 C -0.218 4.218 19 C 0.346 3.654 20 O -0.465 6.465 21 H 0.039 0.961 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.190 0.810 26 H 0.184 0.816 27 H 0.152 0.848 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.186 -7.181 11.164 13.327 hybrid contribution 0.123 -0.682 -0.870 1.112 sum 1.309 -7.864 10.294 13.020 Atomic orbital electron populations 1.22034 0.97450 0.99484 1.00943 1.19106 0.91070 0.94252 0.78340 0.91329 1.21246 1.37219 1.08878 0.89900 0.91743 1.24906 0.94867 0.94667 0.99084 1.69967 1.43935 1.13700 1.24466 0.86454 0.78812 0.79903 0.81957 1.20295 1.21090 1.19851 1.46239 1.43889 1.10416 1.21342 1.21707 1.03402 0.88121 0.96081 1.21319 1.05650 0.92534 0.99537 1.44659 1.46609 1.11505 1.20529 1.21431 0.97112 1.01042 0.80909 1.23444 0.98934 1.02869 0.97608 1.23330 1.01060 0.94344 1.03023 1.16320 0.83224 0.84788 0.81107 1.90952 1.60429 1.16092 1.79030 0.96112 0.89944 0.94397 0.92401 0.81045 0.81631 0.84800 0.88304 0.87983 0.87774 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.16 37.15 0.34 -2.95 16 2 C 0.27 7.06 2.80 -69.09 -0.19 6.87 16 3 H 0.07 2.07 7.67 -51.93 -0.40 1.67 16 4 C -0.53 -14.51 8.46 -34.44 -0.29 -14.80 16 5 H 0.06 1.73 7.70 -52.48 -0.40 1.33 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 7 N -0.88 -25.02 12.16 55.43 0.67 -24.35 16 8 Si 0.90 20.82 29.55 -169.99 -5.02 15.80 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.50 -11.68 2.62 -115.51 -0.30 -11.98 16 13 C 0.03 0.62 10.47 -16.29 -0.17 0.45 16 14 C -0.07 -1.08 10.78 -16.30 -0.18 -1.25 16 15 N -0.51 -9.44 3.11 -114.22 -0.36 -9.80 16 16 C 0.10 1.45 6.75 -67.89 -0.46 0.99 16 17 C -0.19 -2.12 10.40 -26.73 -0.28 -2.40 16 18 C -0.18 -1.84 9.99 -26.69 -0.27 -2.11 16 19 C 0.64 15.25 8.52 -86.94 -0.74 14.51 16 20 O -0.59 -16.03 17.46 5.10 0.09 -15.94 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.08 2.06 6.84 -51.93 -0.35 1.71 16 23 H 0.04 0.80 7.84 -51.92 -0.41 0.39 16 24 H 0.27 7.12 8.31 -40.81 -0.34 6.78 16 25 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 26 H 0.17 1.90 7.08 -52.49 -0.37 1.53 16 27 H 0.13 1.99 8.14 -51.93 -0.42 1.57 16 28 H 0.10 1.14 8.14 -51.92 -0.42 0.71 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.97 6.85 -51.93 -0.36 0.61 16 LS Contribution 269.78 15.07 4.07 4.07 Total: -1.00 -32.28 269.78 -7.14 -39.42 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.96 Total: 1.69 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.33 Total: 1.09 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.02 Total: -46.13 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.28 -7.14 -39.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261044194.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.658 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds