Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47229 * 2 1 4 4 C 1.50699 * 109.47577 * 240.00018 * 2 1 3 5 5 H 1.08005 * 119.99696 * 245.46760 * 4 2 1 6 6 C 1.37878 * 119.99948 * 65.45622 * 4 2 1 7 7 N 1.31507 * 119.99691 * 9.58777 * 6 4 2 8 8 Si 1.86798 * 120.00042 * 189.58187 * 6 4 2 9 9 H 1.48499 * 109.47354 * 84.99393 * 8 6 4 10 10 H 1.48503 * 109.47348 * 204.99963 * 8 6 4 11 11 H 1.48506 * 109.46949 * 324.99685 * 8 6 4 12 12 N 1.46502 * 109.47113 * 119.99942 * 2 1 3 13 13 C 1.38697 * 125.98760 * 59.97345 * 12 2 1 14 14 C 1.32859 * 107.91885 * 180.02562 * 13 12 2 15 15 N 1.38697 * 107.91488 * 0.02562 * 14 13 12 16 16 C 1.46496 * 125.98727 * 180.02562 * 15 14 13 17 17 C 1.53006 * 117.49544 * 300.01427 * 16 15 14 18 18 C 1.53005 * 60.03195 * 107.50039 * 17 16 15 19 19 C 1.34761 * 108.03138 * 0.25259 * 15 14 13 20 20 O 1.21796 * 125.94535 * 179.73714 * 19 15 14 21 21 H 1.09000 * 109.47368 * 303.42176 * 1 2 3 22 22 H 1.09003 * 109.47471 * 63.42592 * 1 2 3 23 23 H 1.09008 * 109.47004 * 183.41826 * 1 2 3 24 24 H 0.97013 * 119.99687 * 179.97438 * 7 6 4 25 25 H 1.07999 * 126.03599 * 0.02562 * 13 12 2 26 26 H 1.07994 * 126.04724 * 179.97438 * 14 13 12 27 27 H 1.09000 * 115.56766 * 154.33387 * 16 15 14 28 28 H 1.09007 * 117.49802 * 0.02562 * 17 16 15 29 29 H 1.08992 * 117.50204 * 214.99769 * 17 16 15 30 30 H 1.09000 * 117.49696 * 107.47490 * 18 17 16 31 31 H 1.08998 * 117.50368 * 252.47655 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.2997 1.0357 -2.5935 8 14 2.1755 -1.1783 -4.0101 9 1 1.0233 -2.0610 -4.3238 10 1 2.4225 -0.2618 -5.1522 11 1 3.3838 -2.0079 -3.7709 12 7 2.0183 -0.6906 1.1962 13 6 1.7605 -2.0099 1.5379 14 6 2.3754 -2.2618 2.6884 15 7 3.0278 -1.1041 3.0859 16 6 3.8295 -0.9418 4.3012 17 6 3.1316 -1.1703 5.6435 18 6 4.1358 -2.1989 5.1193 19 6 2.7908 -0.1532 2.1608 20 8 3.2056 0.9916 2.1898 21 1 -0.3634 0.5660 0.8577 22 1 -0.3634 0.4597 -0.9191 23 1 -0.3633 -1.0259 0.0613 24 1 1.1328 1.4109 -3.4724 25 1 1.1650 -2.7088 0.9693 26 1 2.3680 -3.2015 3.2205 27 1 4.5976 -0.1696 4.2584 28 1 2.0761 -1.4419 5.6223 29 1 3.4404 -0.5484 6.4836 30 1 5.1054 -2.2531 5.6143 31 1 3.7410 -3.1467 4.7536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261044194.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = 24.153670 kcal Electronic energy + Delta-G solvation = -15155.370668 eV Core-core repulsion = 12631.357368 eV Total energy + Delta-G solvation = -2524.013300 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.05327 -38.48830 -37.71863 -36.29319 -33.94479 -31.20980 -29.49843 -27.34764 -24.65150 -23.90697 -23.20823 -21.46226 -21.02894 -18.74048 -18.24744 -17.15199 -16.96112 -16.26792 -15.95185 -15.60169 -15.24691 -14.69982 -13.98844 -13.88181 -13.54859 -13.26021 -13.02324 -12.93407 -12.71663 -12.40547 -12.35218 -12.21508 -11.89263 -11.66249 -11.26552 -11.16977 -10.60498 -10.20525 -8.50457 -8.22822 -6.40195 1.40251 1.43763 1.46644 1.53453 1.55534 1.97104 2.39032 2.84264 2.92140 3.05202 3.64191 3.94196 4.05001 4.23681 4.51960 4.62432 4.69613 4.76950 4.80532 4.82912 4.87874 5.01169 5.19242 5.21548 5.36179 5.56457 5.67096 5.80388 5.99843 6.22711 6.65423 6.79723 7.27141 7.49836 8.82932 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.047950 B = 0.007314 C = 0.007053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.797122 B = 3827.272537 C = 3968.929902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.276 3.724 3 H 0.008 0.992 4 C -0.547 4.547 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.515 5.515 13 C -0.005 4.005 14 C -0.028 4.028 15 N -0.501 5.501 16 C 0.041 3.959 17 C -0.174 4.174 18 C -0.140 4.140 19 C 0.610 3.390 20 O -0.646 6.646 21 H 0.024 0.976 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.269 0.731 25 H 0.197 0.803 26 H 0.225 0.775 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -11.772 12.632 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.175 3.825 3 H 0.026 0.974 4 C -0.585 4.585 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.185 1.185 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.231 5.231 13 C -0.129 4.129 14 C -0.150 4.150 15 N -0.219 5.219 16 C -0.062 4.062 17 C -0.212 4.212 18 C -0.177 4.177 19 C 0.313 3.687 20 O -0.531 6.531 21 H 0.043 0.957 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.214 0.786 26 H 0.241 0.759 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.188 -10.801 12.487 16.553 hybrid contribution 0.179 0.416 -1.120 1.209 sum 1.367 -10.385 11.367 15.457 Atomic orbital electron populations 1.21811 0.95531 1.00890 1.00000 1.18740 0.92445 0.91577 0.79749 0.97408 1.21462 1.37548 1.08896 0.90635 0.91675 1.25814 0.94522 0.95537 1.02290 1.70107 1.44862 1.15314 1.25303 0.85342 0.79073 0.78301 0.77549 1.18470 1.21105 1.19537 1.46064 1.44082 1.12387 1.20526 1.22275 1.06103 0.86480 0.98040 1.22205 1.01795 0.92942 0.98064 1.44784 1.45875 1.10864 1.20395 1.21817 0.98595 1.04782 0.81022 1.23533 0.99348 1.03054 0.95290 1.23529 1.01972 0.92988 0.99212 1.16714 0.84202 0.85161 0.82654 1.90868 1.62826 1.18778 1.80587 0.95667 0.92005 0.91774 0.92230 0.78608 0.75872 0.86647 0.88152 0.86272 0.85256 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 9.16 71.98 0.66 -5.27 16 2 C 0.28 15.02 2.80 44.24 0.12 15.14 16 3 H 0.01 0.52 7.67 -2.39 -0.02 0.50 16 4 C -0.55 -30.36 8.46 25.60 0.22 -30.15 16 5 H 0.07 3.52 7.70 -2.91 -0.02 3.50 16 6 C 0.02 1.04 5.17 84.66 0.44 1.48 16 7 N -0.92 -53.69 12.16 21.45 0.26 -53.43 16 8 Si 0.97 42.74 29.55 68.60 2.03 44.77 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 N -0.52 -24.49 2.62 -637.54 -1.67 -26.16 16 13 C 0.00 -0.17 10.47 82.43 0.86 0.69 16 14 C -0.03 -0.80 10.78 82.43 0.89 0.09 16 15 N -0.50 -17.98 3.11 -633.46 -1.97 -19.95 16 16 C 0.04 1.12 6.75 45.02 0.30 1.43 16 17 C -0.17 -3.28 10.40 30.60 0.32 -2.96 16 18 C -0.14 -2.19 9.99 30.62 0.31 -1.88 16 19 C 0.61 30.12 8.52 179.06 1.53 31.65 16 20 O -0.65 -38.02 17.46 -4.65 -0.08 -38.10 16 21 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.06 3.20 6.84 -2.39 -0.02 3.18 16 23 H 0.06 2.67 7.84 -2.38 -0.02 2.65 16 24 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 25 H 0.20 5.66 8.06 -2.91 -0.02 5.64 16 26 H 0.22 3.61 7.08 -2.91 -0.02 3.59 16 27 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 28 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.12 1.49 6.85 -2.39 -0.02 1.47 16 Total: -1.00 -76.37 269.78 5.33 -71.04 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.12 Total: 11.63 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.64 Total: 10.21 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -3.38 Total: -99.54 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.08 Total: -38.10 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -76.37 5.33 -71.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261044194.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.191 kcal (2) G-P(sol) polarization free energy of solvation -76.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds