Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99923 * 2 1 4 4 C 1.50700 * 109.47255 * 180.02562 * 3 2 1 5 5 N 1.31014 * 125.18006 * 90.02384 * 4 3 2 6 6 C 1.33016 * 109.97922 * 179.97438 * 5 4 3 7 7 C 1.39618 * 107.46678 * 0.25941 * 6 5 4 8 8 C 1.40058 * 127.06513 * 179.71273 * 7 6 5 9 9 H 1.07993 * 120.00487 * 189.38940 * 8 7 6 10 10 C 1.40075 * 119.99512 * 9.38230 * 8 7 6 11 11 N 1.30849 * 120.00190 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99712 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46681 * 60.00659 * 12 10 8 14 14 H 1.48498 * 109.46934 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47224 * 300.00565 * 12 10 8 16 16 N 1.35079 * 125.17277 * 269.97940 * 4 3 2 17 17 C 1.46492 * 126.48724 * 0.02562 * 16 4 3 18 18 C 1.52998 * 117.50380 * 132.52229 * 17 16 4 19 19 C 1.53004 * 117.50205 * 63.85753 * 17 16 4 20 20 H 1.08997 * 109.46802 * 300.00053 * 1 2 3 21 21 H 1.08998 * 109.47120 * 60.00629 * 1 2 3 22 22 H 1.08998 * 109.46641 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47521 * 59.99575 * 3 2 1 24 24 H 1.09001 * 109.46848 * 299.99865 * 3 2 1 25 25 H 1.08006 * 126.26439 * 179.97438 * 6 5 4 26 26 H 0.97003 * 119.99731 * 179.97438 * 11 10 8 27 27 H 1.09005 * 115.55256 * 278.19196 * 17 16 4 28 28 H 1.09002 * 117.49409 * 359.97438 * 18 17 16 29 29 H 1.08993 * 117.50519 * 145.02302 * 18 17 16 30 30 H 1.08997 * 117.50017 * 214.98460 * 19 17 16 31 31 H 1.09003 * 117.49495 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2646 1.1276 -1.0718 6 6 5.5444 1.0266 -0.7236 7 6 5.5995 1.0158 0.6715 8 6 6.7458 0.9174 1.4703 9 1 6.6505 0.7674 2.5355 10 6 8.0159 1.0135 0.8874 11 7 8.1314 1.1956 -0.4032 12 14 9.5447 0.8831 1.9529 13 1 9.5618 -0.4361 2.6347 14 1 10.7541 1.0165 1.1016 15 1 9.5335 1.9656 2.9693 16 7 4.2887 1.1253 1.1032 17 6 3.8298 1.1614 2.4939 18 6 4.3979 0.1133 3.4529 19 6 2.9468 0.0089 2.9767 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8463 -0.8900 25 1 6.3864 0.9601 -1.3968 26 1 9.0110 1.2626 -0.8067 27 1 3.6263 2.1538 2.8963 28 1 5.1129 -0.6034 3.0488 29 1 4.5679 0.4159 4.4860 30 1 2.1628 0.2430 3.6968 31 1 2.7071 -0.7760 2.2593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045775.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = 13.188006 kcal Electronic energy + Delta-G solvation = -15265.679898 eV Core-core repulsion = 12741.191091 eV Total energy + Delta-G solvation = -2524.488807 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.01590 -38.54745 -37.80913 -35.57083 -32.32504 -31.37997 -28.99567 -26.91165 -25.15169 -23.73278 -23.45994 -21.53094 -20.06194 -19.06551 -17.65005 -17.34506 -16.65652 -16.42737 -16.31249 -15.44923 -14.82715 -14.57716 -14.40344 -13.71976 -13.60235 -13.10675 -12.91182 -12.69800 -12.55063 -12.30797 -12.20214 -12.00511 -11.60682 -11.29716 -11.22132 -10.58767 -10.22232 -9.99952 -8.91266 -8.52782 -6.27008 1.27009 1.41219 1.55180 1.73942 2.18341 2.43651 2.56385 2.76043 3.27321 3.42351 3.82598 3.93568 4.02489 4.10085 4.26522 4.47410 4.61080 4.62326 4.72808 4.83028 4.87359 5.03817 5.15988 5.20002 5.24744 5.68985 5.79754 5.98759 6.32164 6.53343 6.84982 6.95918 7.25401 7.94110 8.46057 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038698 B = 0.008951 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.379089 B = 3127.264691 C = 3717.650192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.182 3.818 4 C 0.079 3.921 5 N -0.504 5.504 6 C -0.178 4.178 7 C 0.170 3.830 8 C -0.467 4.467 9 H 0.090 0.910 10 C 0.025 3.975 11 N -0.835 5.835 12 Si 1.003 2.997 13 H -0.258 1.258 14 H -0.271 1.271 15 H -0.257 1.257 16 N -0.466 5.466 17 C 0.043 3.957 18 C -0.163 4.163 19 C -0.149 4.149 20 H 0.059 0.941 21 H 0.047 0.953 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.160 0.840 26 H 0.285 0.715 27 H 0.132 0.868 28 H 0.075 0.925 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 -0.315 9.120 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.105 3.895 4 C -0.175 4.175 5 N -0.225 5.225 6 C -0.326 4.326 7 C 0.058 3.942 8 C -0.502 4.502 9 H 0.108 0.892 10 C -0.189 4.189 11 N -0.463 5.463 12 Si 0.823 3.177 13 H -0.183 1.183 14 H -0.196 1.196 15 H -0.181 1.181 16 N -0.158 5.158 17 C -0.061 4.061 18 C -0.200 4.200 19 C -0.187 4.187 20 H 0.077 0.923 21 H 0.066 0.934 22 H 0.113 0.887 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.177 0.823 26 H 0.096 0.904 27 H 0.149 0.851 28 H 0.094 0.906 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.788 -0.417 8.201 12.027 hybrid contribution 1.037 0.152 0.458 1.144 sum -7.751 -0.265 8.659 11.624 Atomic orbital electron populations 1.22936 0.79255 1.03726 1.01079 1.87989 1.21616 1.28335 1.95502 1.20166 0.83652 0.84719 1.00983 1.22421 0.94304 1.18703 0.82026 1.69322 1.04727 1.17949 1.30486 1.23092 0.92276 1.23292 0.93907 1.19314 0.83327 0.97762 0.93818 1.18841 0.88966 1.46753 0.95593 0.89195 1.26831 1.03648 0.91884 0.96528 1.69786 1.26832 1.36803 1.12916 0.84943 0.74854 0.79987 0.77958 1.18255 1.19589 1.18106 1.44562 1.05921 1.60194 1.05152 1.21864 1.06892 0.96644 0.80696 1.23266 0.96792 1.00337 0.99642 1.23330 0.94268 0.98447 1.02613 0.92272 0.93388 0.88653 0.90783 0.91742 0.82293 0.90411 0.85103 0.90590 0.84686 0.84187 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.42 -15.26 10.64 -148.98 -1.59 -16.85 16 3 C 0.18 6.99 6.14 71.24 0.44 7.42 16 4 C 0.08 4.01 7.49 137.97 1.03 5.05 16 5 N -0.50 -29.76 11.18 -184.80 -2.07 -31.83 16 6 C -0.18 -11.07 10.86 84.85 0.92 -10.14 16 7 C 0.17 9.83 6.61 38.87 0.26 10.09 16 8 C -0.47 -25.30 8.62 23.16 0.20 -25.10 16 9 H 0.09 4.45 6.11 -2.91 -0.02 4.43 16 10 C 0.02 1.27 5.49 85.28 0.47 1.74 16 11 N -0.84 -46.08 10.44 21.86 0.23 -45.85 16 12 Si 1.00 38.60 29.56 68.60 2.03 40.63 16 13 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 14 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 15 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 16 N -0.47 -23.15 3.08 -482.75 -1.49 -24.64 16 17 C 0.04 1.59 5.89 44.99 0.27 1.85 16 18 C -0.16 -5.26 8.90 30.62 0.27 -4.99 16 19 C -0.15 -4.41 10.36 30.62 0.32 -4.09 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.07 2.36 7.81 -2.39 -0.02 2.34 16 24 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.16 10.38 5.92 -2.91 -0.02 10.37 16 26 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 27 H 0.13 4.22 8.14 -2.38 -0.02 4.20 16 28 H 0.08 2.96 7.34 -2.39 -0.02 2.95 16 29 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 Total: -1.00 -72.33 268.16 3.66 -68.67 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 1.13 Total: 26.18 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 5.42 Total: -16.31 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -3.32 Total: -102.32 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.59 Total: -16.85 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -72.33 3.66 -68.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045775.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.858 kcal (2) G-P(sol) polarization free energy of solvation -72.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds