Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47135 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99838 * 2 1 3 5 5 N 1.28600 * 124.85154 * 300.03909 * 4 2 1 6 6 C 1.32908 * 109.90061 * 179.97438 * 5 4 2 7 7 C 1.41428 * 126.60827 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00360 * 179.97438 * 7 6 5 9 9 C 1.39853 * 120.00022 * 359.97438 * 7 6 5 10 10 N 1.30900 * 119.99770 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00445 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46844 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47519 * 119.99994 * 11 9 7 14 14 H 1.48499 * 109.47275 * 240.00329 * 11 9 7 15 15 C 1.41636 * 106.78939 * 0.02562 * 6 5 4 16 16 C 1.35296 * 105.80212 * 359.97438 * 15 6 5 17 17 C 1.51001 * 107.60542 * 180.22576 * 16 15 6 18 18 O 1.44148 * 105.87269 * 342.26384 * 17 16 15 19 19 C 1.44053 * 104.29254 * 27.97005 * 18 17 16 20 20 H 1.08999 * 109.46862 * 300.00201 * 1 2 3 21 21 H 1.08993 * 109.47040 * 60.00221 * 1 2 3 22 22 H 1.09001 * 109.47047 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47075 * 239.99402 * 2 1 3 24 24 H 1.09004 * 109.47245 * 179.97438 * 3 2 1 25 25 H 1.09007 * 109.47487 * 299.99647 * 3 2 1 26 26 H 1.08999 * 109.47409 * 60.00134 * 3 2 1 27 27 H 0.96997 * 119.99882 * 180.02562 * 10 9 7 28 28 H 1.08993 * 110.16360 * 101.34434 * 17 16 15 29 29 H 1.08999 * 110.15590 * 223.10952 * 17 16 15 30 30 H 1.08999 * 110.16981 * 213.08191 * 19 18 17 31 31 H 1.08993 * 110.17317 * 91.27779 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7652 -0.3339 2.4055 6 6 2.3545 -1.1679 3.2561 7 6 2.3082 -1.1047 4.6682 8 1 2.8295 -1.8430 5.2593 9 6 1.5871 -0.0859 5.2992 10 7 0.9548 0.8087 4.5828 11 14 1.5253 -0.0026 7.1643 12 1 2.3161 -1.1219 7.7362 13 1 2.0956 1.2900 7.6213 14 1 0.1153 -0.1096 7.6181 15 6 3.0380 -2.1325 2.4759 16 6 2.8018 -1.7978 1.1864 17 6 3.5104 -2.8075 0.3154 18 8 4.4795 -3.4512 1.1665 19 6 3.9087 -3.3621 2.4862 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.4550 1.5155 5.0204 28 1 2.7990 -3.5404 -0.0650 29 1 4.0108 -2.3043 -0.5119 30 1 4.6979 -3.2577 3.2307 31 1 3.3075 -4.2466 2.6962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053203.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 44.395999 kcal Electronic energy + Delta-G solvation = -15426.615805 eV Core-core repulsion = 12903.480278 eV Total energy + Delta-G solvation = -2523.135527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05917 -37.79051 -34.89372 -33.00140 -29.81888 -29.54994 -27.26521 -26.83816 -25.58613 -23.07104 -21.34862 -19.15180 -18.80015 -16.74867 -15.73483 -15.58166 -14.90166 -14.49256 -14.06304 -13.83380 -13.36245 -12.73549 -12.26997 -12.17913 -11.94901 -11.73362 -11.71259 -11.13526 -11.07209 -10.83411 -10.81693 -10.51795 -10.28877 -9.79591 -9.50945 -9.17467 -8.45697 -7.44911 -7.17744 -6.29813 -4.15155 3.14443 3.23987 3.25058 3.30111 3.68802 4.20490 4.33361 4.65075 4.99254 5.24244 5.39883 5.47406 5.67011 5.78678 5.86938 5.89517 5.93723 6.02516 6.12827 6.22000 6.32085 6.44066 6.64382 6.65800 7.02931 7.22274 7.37153 7.47606 7.79075 8.30822 8.66304 8.97455 9.25257 10.23007 10.68320 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.011507 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.352239 B = 2432.818923 C = 3397.933973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 C -0.156 4.156 4 N -0.289 5.289 5 N -0.308 5.308 6 C 0.226 3.774 7 C -0.447 4.447 8 H 0.079 0.921 9 C 0.073 3.927 10 N -0.782 5.782 11 Si 0.903 3.097 12 H -0.264 1.264 13 H -0.279 1.279 14 H -0.279 1.279 15 C -0.310 4.310 16 C -0.087 4.087 17 C 0.148 3.852 18 O -0.374 6.374 19 C 0.140 3.860 20 H 0.077 0.923 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.267 0.733 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -1.651 -7.469 7.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 C -0.214 4.214 4 N -0.072 5.072 5 N -0.140 5.140 6 C 0.078 3.922 7 C -0.486 4.486 8 H 0.097 0.903 9 C -0.145 4.145 10 N -0.410 5.410 11 Si 0.729 3.271 12 H -0.188 1.188 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.324 4.324 16 C -0.216 4.216 17 C 0.069 3.931 18 O -0.292 6.292 19 C 0.063 3.937 20 H 0.096 0.904 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.304 -0.510 -7.764 7.787 hybrid contribution 0.184 -0.468 0.953 1.078 sum -0.120 -0.978 -6.811 6.882 Atomic orbital electron populations 1.22066 0.94150 1.02273 1.02858 1.21020 0.95129 0.93589 0.84663 1.22065 1.01198 0.95260 1.02838 1.45011 1.37458 1.18570 1.06176 1.74954 1.28324 1.25341 0.85381 1.18519 0.92087 0.88034 0.93533 1.18579 1.30110 1.11601 0.88328 0.90301 1.25735 0.94318 0.94927 0.99498 1.69965 1.24070 1.10960 1.36031 0.86342 0.78308 0.78669 0.83755 1.18809 1.20419 1.20423 1.21529 1.12941 1.03552 0.94333 1.22267 1.04973 0.95932 0.98387 1.20715 0.90063 0.91026 0.91291 1.89079 1.42917 1.78514 1.18699 1.20642 0.95157 0.94198 0.83665 0.90416 0.92025 0.92801 0.90071 0.92761 0.92025 0.90425 0.92253 0.91985 0.90581 0.90354 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.37 37.16 0.35 -2.22 16 2 C 0.16 2.84 3.60 -67.93 -0.24 2.59 16 3 C -0.16 -2.59 9.37 37.15 0.35 -2.24 16 4 N -0.29 -6.73 3.06 -50.43 -0.15 -6.88 16 5 N -0.31 -8.48 9.92 32.24 0.32 -8.16 16 6 C 0.23 6.43 6.77 -84.89 -0.57 5.86 16 7 C -0.45 -12.73 9.41 -37.76 -0.36 -13.08 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.72 16 9 C 0.07 1.99 5.49 -17.34 -0.10 1.89 16 10 N -0.78 -22.07 11.97 55.54 0.67 -21.41 16 11 Si 0.90 20.13 29.56 -169.99 -5.02 15.10 16 12 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C -0.31 -7.80 7.20 -104.39 -0.75 -8.55 16 16 C -0.09 -1.98 7.72 -81.81 -0.63 -2.61 16 17 C 0.15 2.71 7.64 36.15 0.28 2.99 16 18 O -0.37 -7.46 11.78 -35.23 -0.42 -7.87 16 19 C 0.14 2.94 7.63 35.99 0.27 3.22 16 20 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.27 6.93 8.30 -40.82 -0.34 6.59 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 267.40 15.07 4.03 4.03 Total: -1.00 -31.84 267.40 -6.18 -38.02 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.19 Total: -0.66 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.41 Total: -12.16 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.83 Total: -36.45 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.42 Total: -7.87 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.84 -6.18 -38.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053203.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.413 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds