Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47135 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99838 * 2 1 3 5 5 N 1.28600 * 124.85154 * 300.03909 * 4 2 1 6 6 C 1.32908 * 109.90061 * 179.97438 * 5 4 2 7 7 C 1.41428 * 126.60827 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00360 * 179.97438 * 7 6 5 9 9 C 1.39853 * 120.00022 * 359.97438 * 7 6 5 10 10 N 1.30900 * 119.99770 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00445 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46844 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47519 * 119.99994 * 11 9 7 14 14 H 1.48499 * 109.47275 * 240.00329 * 11 9 7 15 15 C 1.41636 * 106.78939 * 0.02562 * 6 5 4 16 16 C 1.35296 * 105.80212 * 359.97438 * 15 6 5 17 17 C 1.51001 * 107.60542 * 180.22576 * 16 15 6 18 18 O 1.44148 * 105.87269 * 342.26384 * 17 16 15 19 19 C 1.44053 * 104.29254 * 27.97005 * 18 17 16 20 20 H 1.08999 * 109.46862 * 300.00201 * 1 2 3 21 21 H 1.08993 * 109.47040 * 60.00221 * 1 2 3 22 22 H 1.09001 * 109.47047 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47075 * 239.99402 * 2 1 3 24 24 H 1.09004 * 109.47245 * 179.97438 * 3 2 1 25 25 H 1.09007 * 109.47487 * 299.99647 * 3 2 1 26 26 H 1.08999 * 109.47409 * 60.00134 * 3 2 1 27 27 H 0.96997 * 119.99882 * 180.02562 * 10 9 7 28 28 H 1.08993 * 110.16360 * 101.34434 * 17 16 15 29 29 H 1.08999 * 110.15590 * 223.10952 * 17 16 15 30 30 H 1.08999 * 110.16981 * 213.08191 * 19 18 17 31 31 H 1.08993 * 110.17317 * 91.27779 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7652 -0.3339 2.4055 6 6 2.3545 -1.1679 3.2561 7 6 2.3082 -1.1047 4.6682 8 1 2.8295 -1.8430 5.2593 9 6 1.5871 -0.0859 5.2992 10 7 0.9548 0.8087 4.5828 11 14 1.5253 -0.0026 7.1643 12 1 2.3161 -1.1219 7.7362 13 1 2.0956 1.2900 7.6213 14 1 0.1153 -0.1096 7.6181 15 6 3.0380 -2.1325 2.4759 16 6 2.8018 -1.7978 1.1864 17 6 3.5104 -2.8075 0.3154 18 8 4.4795 -3.4512 1.1665 19 6 3.9087 -3.3621 2.4862 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.4550 1.5155 5.0204 28 1 2.7990 -3.5404 -0.0650 29 1 4.0108 -2.3043 -0.5119 30 1 4.6979 -3.2577 3.2307 31 1 3.3075 -4.2466 2.6962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053203.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = 22.754486 kcal Electronic energy + Delta-G solvation = -15427.554251 eV Core-core repulsion = 12903.480278 eV Total energy + Delta-G solvation = -2524.073974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.85474 -39.40034 -36.49045 -34.93481 -31.55682 -31.36060 -28.93995 -28.17871 -27.48750 -24.77053 -23.03876 -20.93728 -20.52278 -18.55075 -17.53196 -17.16563 -16.55744 -16.26475 -15.70547 -15.26627 -15.02132 -14.49807 -13.85209 -13.75826 -13.48247 -13.28790 -13.06700 -12.87707 -12.76400 -12.62147 -12.27193 -12.12881 -12.03799 -11.64089 -11.20765 -11.04469 -10.36024 -9.40597 -8.98456 -8.31571 -6.24396 1.37381 1.41302 1.48308 1.56538 2.08256 2.32995 2.33342 3.08137 3.48656 3.56271 3.82198 4.05577 4.14035 4.16844 4.47859 4.51761 4.64644 4.68109 4.71479 4.81287 4.82969 4.87645 5.12467 5.26482 5.31145 5.37340 5.50885 5.72674 5.87669 6.39497 6.76406 6.94217 7.19719 8.28456 8.68414 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.011507 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.352239 B = 2432.818923 C = 3397.933973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.142 3.858 3 C -0.147 4.147 4 N -0.292 5.292 5 N -0.337 5.337 6 C 0.180 3.820 7 C -0.484 4.484 8 H 0.077 0.923 9 C 0.025 3.975 10 N -0.820 5.820 11 Si 0.982 3.018 12 H -0.257 1.257 13 H -0.272 1.272 14 H -0.271 1.271 15 C -0.356 4.356 16 C -0.079 4.079 17 C 0.152 3.848 18 O -0.375 6.375 19 C 0.149 3.851 20 H 0.037 0.963 21 H 0.107 0.893 22 H 0.048 0.952 23 H 0.123 0.877 24 H 0.046 0.954 25 H 0.108 0.892 26 H 0.037 0.963 27 H 0.271 0.729 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 -2.197 -9.110 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.041 3.959 3 C -0.205 4.205 4 N -0.076 5.076 5 N -0.170 5.170 6 C 0.032 3.968 7 C -0.523 4.523 8 H 0.095 0.905 9 C -0.189 4.189 10 N -0.450 5.450 11 Si 0.804 3.196 12 H -0.181 1.181 13 H -0.197 1.197 14 H -0.196 1.196 15 C -0.369 4.369 16 C -0.209 4.209 17 C 0.073 3.927 18 O -0.293 6.293 19 C 0.071 3.929 20 H 0.056 0.944 21 H 0.126 0.874 22 H 0.067 0.933 23 H 0.141 0.859 24 H 0.065 0.935 25 H 0.126 0.874 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.073 -1.057 -9.428 9.487 hybrid contribution 0.108 -0.288 1.289 1.326 sum 0.035 -1.345 -8.139 8.249 Atomic orbital electron populations 1.21999 0.93240 1.02026 1.03129 1.21624 0.96018 0.94247 0.83963 1.22003 1.00636 0.94673 1.03143 1.45511 1.36901 1.18829 1.06398 1.74825 1.28870 1.26078 0.87197 1.18973 0.93715 0.89816 0.94298 1.18908 1.31505 1.12662 0.89222 0.90470 1.26647 0.93408 0.94051 1.04810 1.70086 1.24969 1.11693 1.38239 0.85156 0.78590 0.78884 0.76965 1.18067 1.19698 1.19589 1.21989 1.14546 1.05261 0.95117 1.23050 1.03395 0.95447 0.99027 1.21062 0.90348 0.90499 0.90753 1.89067 1.43423 1.78607 1.18245 1.20590 0.94790 0.93043 0.84429 0.94373 0.87403 0.93279 0.85923 0.93477 0.87356 0.94368 0.91907 0.88917 0.87054 0.90174 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.37 71.98 0.67 -3.92 16 2 C 0.14 4.79 3.60 44.99 0.16 4.95 16 3 C -0.15 -4.67 9.37 71.98 0.67 -4.00 16 4 N -0.29 -13.57 3.06 -313.46 -0.96 -14.53 16 5 N -0.34 -19.21 9.92 -51.92 -0.51 -19.73 16 6 C 0.18 10.66 6.77 40.60 0.27 10.93 16 7 C -0.48 -28.77 9.41 23.45 0.22 -28.55 16 8 H 0.08 4.38 7.84 -2.91 -0.02 4.35 16 9 C 0.02 1.39 5.49 85.22 0.47 1.86 16 10 N -0.82 -48.25 11.97 21.81 0.26 -47.99 16 11 Si 0.98 42.46 29.56 68.60 2.03 44.49 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 C -0.36 -18.12 7.20 -19.71 -0.14 -18.26 16 16 C -0.08 -3.50 7.72 41.39 0.32 -3.18 16 17 C 0.15 5.01 7.64 71.33 0.54 5.56 16 18 O -0.38 -13.98 11.78 -148.98 -1.75 -15.74 16 19 C 0.15 6.11 7.63 71.23 0.54 6.66 16 20 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.12 3.13 8.04 -2.38 -0.02 3.11 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.27 14.61 8.30 -92.71 -0.77 13.85 16 28 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -73.23 267.40 3.91 -69.32 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.12 Total: 12.14 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 3.74 Total: -27.96 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.21 Total: -82.24 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.75 Total: -15.74 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -73.23 3.91 -69.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053203.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.072 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds