Wall clock time and date at job start Mon Mar 30 2020 03:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.44573 * 110.99802 * 2 1 4 4 C 1.53786 * 110.89066 * 305.44557 * 3 2 1 5 5 C 1.52066 * 106.76333 * 280.81272 * 4 3 2 6 6 N 1.29985 * 127.45370 * 243.32369 * 5 4 3 7 7 O 1.41818 * 108.58978 * 179.75699 * 6 5 4 8 8 C 1.35485 * 107.91679 * 0.04977 * 7 6 5 9 9 C 1.39931 * 126.62336 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00230 * 179.97438 * 9 8 7 11 11 C 1.40433 * 120.00228 * 359.97438 * 9 8 7 12 12 N 1.30580 * 119.99157 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00252 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47056 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46991 * 119.99617 * 13 11 9 16 16 H 1.48493 * 109.46955 * 239.99781 * 13 11 9 17 17 C 1.38563 * 106.75592 * 0.02562 * 8 7 6 18 18 C 1.51913 * 127.80794 * 179.91615 * 17 8 7 19 19 C 1.44763 * 110.97171 * 224.83345 * 2 1 3 20 20 H 1.09001 * 109.47188 * 66.02016 * 1 2 3 21 21 H 1.09003 * 109.46406 * 186.01807 * 1 2 3 22 22 H 1.08998 * 109.47296 * 306.01579 * 1 2 3 23 23 H 1.09003 * 109.19258 * 185.08148 * 3 2 1 24 24 H 1.08999 * 109.15346 * 65.78279 * 3 2 1 25 25 H 1.09004 * 109.98767 * 161.50384 * 4 3 2 26 26 H 1.08995 * 110.06930 * 40.17399 * 4 3 2 27 27 H 0.97005 * 119.98987 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.99875 * 235.80688 * 18 17 8 29 29 H 1.09001 * 109.99598 * 357.09452 * 18 17 8 30 30 H 1.09000 * 109.36594 * 294.45344 * 19 2 1 31 31 H 1.08998 * 109.16702 * 175.05914 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9870 1.3497 0.0000 4 6 1.4056 2.1603 -1.1705 5 6 2.1834 1.7559 -2.4131 6 7 2.9430 2.5102 -3.1504 7 8 3.4760 1.7234 -4.2031 8 6 2.9999 0.4627 -4.0635 9 6 3.2781 -0.6311 -4.8907 10 1 2.8380 -1.5943 -4.6786 11 6 4.1295 -0.4764 -5.9967 12 7 4.6612 0.6883 -6.2533 13 14 4.5015 -1.9367 -7.1005 14 1 3.7813 -3.1338 -6.5971 15 1 4.0564 -1.6366 -8.4851 16 1 5.9628 -2.2006 -7.0965 17 6 2.1842 0.4655 -2.9433 18 6 1.4069 -0.6993 -2.3545 19 6 1.9871 -0.9586 -0.9530 20 1 -0.3633 0.4177 -0.9390 21 1 -0.3632 -1.0221 0.1078 22 1 -0.3634 0.6043 0.8312 23 1 3.0727 1.3168 -0.0912 24 1 1.7209 1.8349 0.9390 25 1 1.5304 3.2269 -0.9834 26 1 0.3490 1.9259 -1.2994 27 1 5.2490 0.7952 -7.0175 28 1 0.3503 -0.4423 -2.2792 29 1 1.5314 -1.5841 -2.9787 30 1 1.7190 -1.9660 -0.6346 31 1 3.0730 -0.8727 -0.9927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096341.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:18 Heat of formation + Delta-G solvation = 32.432411 kcal Electronic energy + Delta-G solvation = -15555.712394 eV Core-core repulsion = 13032.058087 eV Total energy + Delta-G solvation = -2523.654307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88102 -37.76655 -34.04304 -32.35058 -31.84010 -29.27374 -27.75623 -26.19814 -24.98026 -22.96932 -20.64694 -19.46995 -18.26789 -17.12579 -15.46173 -15.20212 -15.03486 -14.76519 -14.14655 -13.59881 -13.16451 -12.83869 -12.46338 -11.92686 -11.72450 -11.59308 -11.47325 -11.44029 -11.04741 -10.94992 -10.75656 -10.45119 -10.34349 -9.88232 -9.71903 -9.23452 -8.95663 -7.77525 -7.27321 -7.07721 -4.84983 2.72901 2.92472 2.99032 3.27116 3.70393 3.91083 4.44436 4.67544 5.00166 5.46731 5.49937 5.59612 5.74844 5.85551 5.88742 6.02497 6.12392 6.16550 6.21193 6.28377 6.46803 6.56033 6.79146 6.83339 6.95290 7.14444 7.45392 7.59242 7.72242 7.88022 8.05345 8.34756 8.49474 9.34424 9.89384 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.009031 C = 0.007773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.038971 B = 3099.628643 C = 3601.494482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.573 5.573 3 C 0.091 3.909 4 C -0.083 4.083 5 C 0.113 3.887 6 N -0.435 5.435 7 O -0.085 6.085 8 C 0.243 3.757 9 C -0.426 4.426 10 H 0.106 0.894 11 C 0.067 3.933 12 N -0.751 5.751 13 Si 0.927 3.073 14 H -0.255 1.255 15 H -0.269 1.269 16 H -0.268 1.268 17 C -0.436 4.436 18 C -0.047 4.047 19 C 0.082 3.918 20 H 0.036 0.964 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.290 0.710 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 -4.155 5.800 8.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.295 5.295 3 C -0.038 4.038 4 C -0.123 4.123 5 C -0.050 4.050 6 N -0.191 5.191 7 O -0.090 6.090 8 C 0.183 3.817 9 C -0.456 4.456 10 H 0.124 0.876 11 C -0.158 4.158 12 N -0.376 5.376 13 Si 0.750 3.250 14 H -0.178 1.178 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.447 4.447 18 C -0.087 4.087 19 C -0.046 4.046 20 H 0.054 0.946 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.777 -2.923 5.819 7.528 hybrid contribution -0.313 -0.942 -1.266 1.609 sum -4.090 -3.865 4.552 7.239 Atomic orbital electron populations 1.22268 0.88134 1.01416 1.00110 1.58344 1.06931 1.10535 1.53715 1.21518 0.99880 0.86650 0.95752 1.21184 0.98765 1.00380 0.91937 1.22355 0.94466 0.93466 0.94735 1.79779 1.21670 1.14574 1.03099 1.89479 1.60042 1.17888 1.41637 1.19757 0.86665 0.85107 0.90210 1.19043 1.24356 0.95363 1.06849 0.87599 1.26332 0.93841 0.97674 0.97980 1.69709 1.19837 1.23923 1.24084 0.85934 0.79272 0.80603 0.79226 1.17840 1.19347 1.19314 1.20380 1.21787 0.95548 1.06999 1.20491 0.96721 0.96149 0.95298 1.21794 0.99833 0.93224 0.89746 0.94611 0.92112 0.92396 0.91122 0.91086 0.91011 0.90099 0.89849 0.93507 0.92096 0.92207 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 8.24 60.06 0.50 0.89 16 2 N -0.57 -9.42 4.49 -245.55 -1.10 -10.52 16 3 C 0.09 1.53 5.63 -4.66 -0.03 1.50 16 4 C -0.08 -1.55 5.93 -26.80 -0.16 -1.70 16 5 C 0.11 2.78 6.40 -82.22 -0.53 2.25 16 6 N -0.44 -12.21 12.91 33.82 0.44 -11.77 16 7 O -0.09 -2.59 10.54 5.51 0.06 -2.53 16 8 C 0.24 6.78 6.87 -38.83 -0.27 6.51 16 9 C -0.43 -11.05 9.15 -38.12 -0.35 -11.40 16 10 H 0.11 2.53 7.01 -52.48 -0.37 2.16 16 11 C 0.07 1.64 5.50 -17.26 -0.09 1.55 16 12 N -0.75 -19.78 12.04 55.57 0.67 -19.11 16 13 Si 0.93 17.71 29.56 -169.99 -5.03 12.68 16 14 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 15 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 16 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 17 C -0.44 -10.85 5.34 -103.43 -0.55 -11.40 16 18 C -0.05 -0.95 5.83 -26.83 -0.16 -1.11 16 19 C 0.08 1.46 5.64 -4.51 -0.03 1.43 16 20 H 0.04 0.54 4.52 -51.93 -0.23 0.30 16 21 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 22 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 23 H 0.07 1.32 7.87 -51.93 -0.41 0.91 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.08 1.41 5.69 -51.93 -0.30 1.12 16 27 H 0.29 6.76 8.29 -40.82 -0.34 6.43 16 28 H 0.05 0.90 5.75 -51.93 -0.30 0.60 16 29 H 0.06 1.22 7.14 -51.93 -0.37 0.85 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 LS Contribution 250.13 15.07 3.77 3.77 Total: -1.00 -30.18 250.13 -6.48 -36.66 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.63 Total: 2.29 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.66 Total: -11.48 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.00 Total: -41.40 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: 0.06 Total: -2.53 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.18 -6.48 -36.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096341.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.094 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds