Wall clock time and date at job start Mon Mar 30 2020 03:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.44573 * 110.99802 * 2 1 4 4 C 1.53786 * 110.89066 * 305.44557 * 3 2 1 5 5 C 1.52066 * 106.76333 * 280.81272 * 4 3 2 6 6 N 1.29985 * 127.45370 * 243.32369 * 5 4 3 7 7 O 1.41818 * 108.58978 * 179.75699 * 6 5 4 8 8 C 1.35485 * 107.91679 * 0.04977 * 7 6 5 9 9 C 1.39931 * 126.62336 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00230 * 179.97438 * 9 8 7 11 11 C 1.40433 * 120.00228 * 359.97438 * 9 8 7 12 12 N 1.30580 * 119.99157 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00252 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47056 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46991 * 119.99617 * 13 11 9 16 16 H 1.48493 * 109.46955 * 239.99781 * 13 11 9 17 17 C 1.38563 * 106.75592 * 0.02562 * 8 7 6 18 18 C 1.51913 * 127.80794 * 179.91615 * 17 8 7 19 19 C 1.44763 * 110.97171 * 224.83345 * 2 1 3 20 20 H 1.09001 * 109.47188 * 66.02016 * 1 2 3 21 21 H 1.09003 * 109.46406 * 186.01807 * 1 2 3 22 22 H 1.08998 * 109.47296 * 306.01579 * 1 2 3 23 23 H 1.09003 * 109.19258 * 185.08148 * 3 2 1 24 24 H 1.08999 * 109.15346 * 65.78279 * 3 2 1 25 25 H 1.09004 * 109.98767 * 161.50384 * 4 3 2 26 26 H 1.08995 * 110.06930 * 40.17399 * 4 3 2 27 27 H 0.97005 * 119.98987 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.99875 * 235.80688 * 18 17 8 29 29 H 1.09001 * 109.99598 * 357.09452 * 18 17 8 30 30 H 1.09000 * 109.36594 * 294.45344 * 19 2 1 31 31 H 1.08998 * 109.16702 * 175.05914 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9870 1.3497 0.0000 4 6 1.4056 2.1603 -1.1705 5 6 2.1834 1.7559 -2.4131 6 7 2.9430 2.5102 -3.1504 7 8 3.4760 1.7234 -4.2031 8 6 2.9999 0.4627 -4.0635 9 6 3.2781 -0.6311 -4.8907 10 1 2.8380 -1.5943 -4.6786 11 6 4.1295 -0.4764 -5.9967 12 7 4.6612 0.6883 -6.2533 13 14 4.5015 -1.9367 -7.1005 14 1 3.7813 -3.1338 -6.5971 15 1 4.0564 -1.6366 -8.4851 16 1 5.9628 -2.2006 -7.0965 17 6 2.1842 0.4655 -2.9433 18 6 1.4069 -0.6993 -2.3545 19 6 1.9871 -0.9586 -0.9530 20 1 -0.3633 0.4177 -0.9390 21 1 -0.3632 -1.0221 0.1078 22 1 -0.3634 0.6043 0.8312 23 1 3.0727 1.3168 -0.0912 24 1 1.7209 1.8349 0.9390 25 1 1.5304 3.2269 -0.9834 26 1 0.3490 1.9259 -1.2994 27 1 5.2490 0.7952 -7.0175 28 1 0.3503 -0.4423 -2.2792 29 1 1.5314 -1.5841 -2.9787 30 1 1.7190 -1.9660 -0.6346 31 1 3.0730 -0.8727 -0.9927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096341.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:18 Heat of formation + Delta-G solvation = 11.086460 kcal Electronic energy + Delta-G solvation = -15556.638024 eV Core-core repulsion = 13032.058087 eV Total energy + Delta-G solvation = -2524.579937 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.76838 -39.27457 -35.95417 -34.14929 -33.52086 -31.10829 -29.36790 -27.66868 -26.69292 -24.57936 -22.45163 -20.99209 -20.16869 -19.00334 -17.23380 -16.56736 -16.52002 -16.32235 -16.00889 -15.22753 -14.85377 -14.48290 -14.12311 -13.69504 -13.29684 -13.09275 -12.92235 -12.81091 -12.64439 -12.42846 -12.27644 -11.97106 -11.87546 -11.56646 -11.49122 -11.15646 -10.91780 -9.60552 -8.94575 -8.82731 -6.84234 0.96202 1.34100 1.53000 1.55296 2.06999 2.09060 2.73092 3.05479 3.15588 3.87681 4.08010 4.16304 4.38538 4.42348 4.49391 4.59781 4.63580 4.85453 4.87713 4.89874 4.95455 5.10629 5.15747 5.22159 5.32119 5.37862 5.59431 5.81224 6.13300 6.33273 6.40032 6.48104 6.56203 7.31522 8.06379 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.009031 C = 0.007773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.038971 B = 3099.628643 C = 3601.494482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.572 5.572 3 C 0.096 3.904 4 C -0.077 4.077 5 C 0.111 3.889 6 N -0.476 5.476 7 O -0.132 6.132 8 C 0.199 3.801 9 C -0.444 4.444 10 H 0.123 0.877 11 C 0.019 3.981 12 N -0.797 5.797 13 Si 1.013 2.987 14 H -0.240 1.240 15 H -0.261 1.261 16 H -0.260 1.260 17 C -0.446 4.446 18 C -0.042 4.042 19 C 0.090 3.910 20 H 0.024 0.976 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.043 0.957 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.300 0.700 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 -6.097 6.825 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.294 5.294 3 C -0.033 4.033 4 C -0.117 4.117 5 C -0.051 4.051 6 N -0.237 5.237 7 O -0.135 6.135 8 C 0.140 3.860 9 C -0.474 4.474 10 H 0.140 0.860 11 C -0.202 4.202 12 N -0.422 5.422 13 Si 0.830 3.170 14 H -0.162 1.162 15 H -0.185 1.185 16 H -0.185 1.185 17 C -0.456 4.456 18 C -0.082 4.082 19 C -0.038 4.038 20 H 0.042 0.958 21 H 0.096 0.904 22 H 0.102 0.898 23 H 0.062 0.938 24 H 0.129 0.871 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.159 -4.872 6.860 9.870 hybrid contribution 0.080 -0.291 -1.545 1.574 sum -5.079 -5.163 5.315 8.984 Atomic orbital electron populations 1.22383 0.85952 1.03101 1.00517 1.58448 1.08686 1.09833 1.52472 1.21559 0.98242 0.87037 0.96445 1.21431 0.98944 1.01459 0.89889 1.23253 0.93251 0.93133 0.95498 1.79692 1.24226 1.15659 1.04145 1.89396 1.61588 1.19210 1.43289 1.20534 0.88184 0.85116 0.92202 1.19567 1.24878 0.95504 1.07411 0.85967 1.27555 0.92646 1.00966 0.99040 1.69808 1.20513 1.26733 1.25157 0.84699 0.79398 0.76275 0.76652 1.16240 1.18486 1.18471 1.20970 1.21291 0.97292 1.06097 1.20580 0.96955 0.94163 0.96467 1.21676 0.98054 0.95323 0.88760 0.95760 0.90395 0.89833 0.93837 0.87077 0.90013 0.88198 0.88857 0.91995 0.92279 0.89148 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.24 127.69 1.05 1.70 16 2 N -0.57 -17.10 4.49 -930.77 -4.18 -21.27 16 3 C 0.10 3.02 5.63 87.00 0.49 3.51 16 4 C -0.08 -2.78 5.93 30.55 0.18 -2.60 16 5 C 0.11 5.52 6.40 43.58 0.28 5.80 16 6 N -0.48 -27.91 12.91 -46.91 -0.61 -28.51 16 7 O -0.13 -8.47 10.54 21.86 0.23 -8.24 16 8 C 0.20 11.55 6.87 22.76 0.16 11.71 16 9 C -0.44 -23.55 9.15 23.21 0.21 -23.34 16 10 H 0.12 5.84 7.01 -2.91 -0.02 5.82 16 11 C 0.02 0.92 5.50 85.41 0.47 1.39 16 12 N -0.80 -43.44 12.04 21.91 0.26 -43.17 16 13 Si 1.01 35.75 29.56 68.60 2.03 37.78 16 14 H -0.24 -7.81 7.11 99.48 0.71 -7.10 16 15 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 16 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 17 C -0.45 -22.57 5.34 -19.09 -0.10 -22.67 16 18 C -0.04 -1.66 5.83 30.53 0.18 -1.48 16 19 C 0.09 3.05 5.64 87.00 0.49 3.54 16 20 H 0.02 0.64 4.52 -2.39 -0.01 0.63 16 21 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 22 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 23 H 0.04 1.60 7.87 -2.39 -0.02 1.58 16 24 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 26 H 0.10 3.23 5.69 -2.39 -0.01 3.22 16 27 H 0.30 14.40 8.29 -92.70 -0.77 13.63 16 28 H 0.06 2.24 5.75 -2.39 -0.01 2.22 16 29 H 0.06 2.30 7.14 -2.39 -0.02 2.28 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.04 1.55 7.87 -2.39 -0.02 1.53 16 Total: -1.00 -69.51 250.13 2.29 -67.22 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.14 Total: 18.65 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 3.41 Total: -22.44 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -4.52 Total: -92.96 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.23 Total: -8.24 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Total: -69.51 2.29 -67.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096341.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.306 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds