Wall clock time and date at job start Mon Mar 30 2020 03:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40288 * 126.04436 * 2 1 4 4 C 1.31332 * 108.24664 * 179.97438 * 3 2 1 5 5 O 1.36003 * 126.01334 * 179.97438 * 4 3 2 6 6 C 1.39709 * 107.96931 * 359.97357 * 4 3 2 7 7 C 1.34346 * 126.03420 * 179.97438 * 2 1 3 8 8 C 1.50833 * 127.99380 * 0.23890 * 7 2 1 9 9 C 1.53356 * 108.39196 * 163.38408 * 8 7 2 10 10 C 1.53109 * 109.51737 * 49.92678 * 9 8 7 11 11 H 1.09003 * 109.45891 * 49.74293 * 10 9 8 12 12 C 1.50699 * 109.46296 * 169.72765 * 10 9 8 13 13 H 1.08002 * 120.00516 * 0.02588 * 12 10 9 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 10 9 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 10 17 17 H 1.48497 * 109.47172 * 179.72730 * 16 14 12 18 18 H 1.48506 * 109.47132 * 299.72429 * 16 14 12 19 19 H 1.48501 * 109.47173 * 59.72550 * 16 14 12 20 20 C 1.50832 * 127.90423 * 180.12876 * 6 4 3 21 21 H 1.09003 * 109.47188 * 90.02193 * 1 2 3 22 22 H 1.08996 * 109.47592 * 210.02746 * 1 2 3 23 23 H 1.09003 * 109.46674 * 330.03030 * 1 2 3 24 24 H 0.96696 * 113.99858 * 270.03332 * 5 4 3 25 25 H 1.08998 * 109.68618 * 283.07935 * 8 7 2 26 26 H 1.09002 * 109.68404 * 43.59179 * 8 7 2 27 27 H 1.09000 * 109.44852 * 289.91528 * 9 8 7 28 28 H 1.09001 * 109.46605 * 169.94516 * 9 8 7 29 29 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.68094 * 43.73469 * 20 6 4 31 31 H 1.08997 * 109.68149 * 283.17608 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2905 1.1343 0.0000 4 6 3.5409 0.7329 0.0006 5 8 4.6386 1.5359 0.0003 6 6 3.5451 -0.6642 0.0015 7 6 2.2553 -1.0864 0.0005 8 6 1.8403 -2.5365 -0.0038 9 6 3.0491 -3.3846 -0.4176 10 6 4.2653 -2.9860 0.4229 11 1 3.9911 -2.9790 1.4778 12 6 5.3771 -3.9786 0.1995 13 1 5.2316 -4.8099 -0.4744 14 6 6.5801 -3.8253 0.8555 15 7 6.7571 -2.8132 1.6765 16 14 7.9609 -5.0512 0.5728 17 1 9.1421 -4.6622 1.3843 18 1 7.5089 -6.4074 0.9752 19 1 8.3293 -5.0587 -0.8657 20 6 4.7380 -1.5872 0.0051 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5134 24 1 4.9559 1.7679 -0.8832 25 1 1.5126 -2.8276 0.9941 26 1 1.0270 -2.6835 -0.7145 27 1 3.2660 -3.2170 -1.4726 28 1 2.8256 -4.4391 -0.2558 29 1 7.6034 -2.7056 2.1383 30 1 5.4804 -1.2249 0.7162 31 1 5.1739 -1.6276 -0.9931 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261098581.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:28 Heat of formation + Delta-G solvation = 26.526633 kcal Electronic energy + Delta-G solvation = -15315.411042 eV Core-core repulsion = 12791.500641 eV Total energy + Delta-G solvation = -2523.910401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.98646 -36.84649 -35.94980 -32.54032 -32.30945 -29.13711 -28.91741 -26.10224 -24.27392 -22.48087 -20.58655 -20.48117 -17.99439 -17.27638 -16.14645 -15.90459 -15.29284 -14.47662 -14.16370 -13.63818 -13.14158 -12.85062 -12.62730 -12.51452 -12.12760 -11.97929 -11.36374 -11.08446 -10.95345 -10.82765 -10.53189 -10.26104 -9.77770 -9.51619 -9.07763 -8.73431 -8.57211 -8.34129 -7.45980 -5.93250 -4.00251 2.23820 2.73787 3.25443 3.34974 3.40435 3.42008 4.47088 4.49854 4.96617 5.17274 5.25577 5.36317 5.46646 5.60854 5.76817 6.08786 6.10781 6.27523 6.56023 6.62540 6.71968 6.90048 7.12863 7.16274 7.50177 7.53065 7.80738 8.00504 8.08979 8.16919 8.21003 8.47571 9.03299 9.64345 11.12805 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038924 B = 0.008636 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.176427 B = 3241.477633 C = 3816.130307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.367 5.367 3 N -0.327 5.327 4 C 0.253 3.747 5 O -0.459 6.459 6 C -0.221 4.221 7 C 0.082 3.918 8 C -0.052 4.052 9 C -0.104 4.104 10 C 0.050 3.950 11 H 0.027 0.973 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.889 3.111 17 H -0.288 1.288 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.031 4.031 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.391 0.609 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.261 0.739 30 H 0.096 0.904 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 3.216 -4.521 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.154 5.154 3 N -0.162 5.162 4 C 0.049 3.951 5 O -0.261 6.261 6 C -0.233 4.233 7 C -0.044 4.044 8 C -0.091 4.091 9 C -0.142 4.142 10 C 0.032 3.968 11 H 0.045 0.955 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.524 5.524 16 Si 0.717 3.283 17 H -0.214 1.214 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.070 4.070 21 H 0.087 0.913 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.245 0.755 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.659 4.298 -3.781 12.098 hybrid contribution 1.335 -1.023 -0.582 1.780 sum -9.323 3.275 -4.363 10.802 Atomic orbital electron populations 1.21717 0.74821 1.04001 1.02766 1.47675 1.05574 1.02952 1.59196 1.77320 1.01550 1.07762 1.29520 1.19693 0.85664 0.88874 1.00861 1.84885 1.39729 1.68585 1.32874 1.20932 0.96398 0.93196 1.12760 1.20960 0.90519 0.90645 1.02312 1.20420 0.99656 0.87477 1.01557 1.21685 0.94565 0.97524 1.00454 1.18737 0.91168 0.92173 0.94755 0.95464 1.21129 0.97950 1.10206 1.26368 0.92664 1.24987 0.98455 0.95406 0.95038 1.69910 1.25028 1.29205 1.28252 0.86709 0.81739 0.81656 0.78156 1.21358 1.20383 1.20330 1.20246 0.92355 0.93665 1.00739 0.91250 0.89742 0.89766 0.75481 0.90553 0.91762 0.92939 0.92154 0.92914 0.88558 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.24 11.31 59.85 0.68 1.92 16 2 N -0.37 -6.42 4.00 -63.88 -0.26 -6.68 16 3 N -0.33 -6.54 12.60 30.48 0.38 -6.16 16 4 C 0.25 5.32 8.44 -17.22 -0.15 5.18 16 5 O -0.46 -8.71 13.66 -19.75 -0.27 -8.98 16 6 C -0.22 -4.86 5.93 -104.91 -0.62 -5.48 16 7 C 0.08 1.56 6.73 -82.33 -0.55 1.01 16 8 C -0.05 -0.87 5.82 -27.63 -0.16 -1.03 16 9 C -0.10 -2.06 5.14 -26.49 -0.14 -2.20 16 10 C 0.05 1.24 2.08 -91.48 -0.19 1.05 16 11 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 12 C -0.52 -13.98 8.52 -34.44 -0.29 -14.27 16 13 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -25.49 11.47 55.43 0.64 -24.85 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.03 -0.77 5.18 -27.59 -0.14 -0.91 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.39 5.21 9.06 45.56 0.41 5.62 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 28 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.10 2.66 6.45 -51.93 -0.33 2.33 16 31 H 0.05 1.13 8.12 -51.93 -0.42 0.70 16 LS Contribution 261.52 15.07 3.94 3.94 Total: -1.00 -32.42 261.52 -5.50 -37.91 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.25 Total: 1.83 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.66 Total: -13.10 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.76 Total: -37.69 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.27 Total: -8.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.42 -5.50 -37.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098581.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.440 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds