Wall clock time and date at job start Mon Mar 30 2020 03:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40288 * 126.04436 * 2 1 4 4 C 1.31332 * 108.24664 * 179.97438 * 3 2 1 5 5 O 1.36003 * 126.01334 * 179.97438 * 4 3 2 6 6 C 1.39709 * 107.96931 * 359.97357 * 4 3 2 7 7 C 1.34346 * 126.03420 * 179.97438 * 2 1 3 8 8 C 1.50833 * 127.99380 * 0.23890 * 7 2 1 9 9 C 1.53356 * 108.39196 * 163.38408 * 8 7 2 10 10 C 1.53109 * 109.51737 * 49.92678 * 9 8 7 11 11 H 1.09003 * 109.45891 * 49.74293 * 10 9 8 12 12 C 1.50699 * 109.46296 * 169.72765 * 10 9 8 13 13 H 1.08002 * 120.00516 * 0.02588 * 12 10 9 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 10 9 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 10 17 17 H 1.48497 * 109.47172 * 179.72730 * 16 14 12 18 18 H 1.48506 * 109.47132 * 299.72429 * 16 14 12 19 19 H 1.48501 * 109.47173 * 59.72550 * 16 14 12 20 20 C 1.50832 * 127.90423 * 180.12876 * 6 4 3 21 21 H 1.09003 * 109.47188 * 90.02193 * 1 2 3 22 22 H 1.08996 * 109.47592 * 210.02746 * 1 2 3 23 23 H 1.09003 * 109.46674 * 330.03030 * 1 2 3 24 24 H 0.96696 * 113.99858 * 270.03332 * 5 4 3 25 25 H 1.08998 * 109.68618 * 283.07935 * 8 7 2 26 26 H 1.09002 * 109.68404 * 43.59179 * 8 7 2 27 27 H 1.09000 * 109.44852 * 289.91528 * 9 8 7 28 28 H 1.09001 * 109.46605 * 169.94516 * 9 8 7 29 29 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.68094 * 43.73469 * 20 6 4 31 31 H 1.08997 * 109.68149 * 283.17608 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2905 1.1343 0.0000 4 6 3.5409 0.7329 0.0006 5 8 4.6386 1.5359 0.0003 6 6 3.5451 -0.6642 0.0015 7 6 2.2553 -1.0864 0.0005 8 6 1.8403 -2.5365 -0.0038 9 6 3.0491 -3.3846 -0.4176 10 6 4.2653 -2.9860 0.4229 11 1 3.9911 -2.9790 1.4778 12 6 5.3771 -3.9786 0.1995 13 1 5.2316 -4.8099 -0.4744 14 6 6.5801 -3.8253 0.8555 15 7 6.7571 -2.8132 1.6765 16 14 7.9609 -5.0512 0.5728 17 1 9.1421 -4.6622 1.3843 18 1 7.5089 -6.4074 0.9752 19 1 8.3293 -5.0587 -0.8657 20 6 4.7380 -1.5872 0.0051 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5134 24 1 4.9559 1.7679 -0.8832 25 1 1.5126 -2.8276 0.9941 26 1 1.0270 -2.6835 -0.7145 27 1 3.2660 -3.2170 -1.4726 28 1 2.8256 -4.4391 -0.2558 29 1 7.6034 -2.7056 2.1383 30 1 5.4804 -1.2249 0.7162 31 1 5.1739 -1.6276 -0.9931 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261098581.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:28 Heat of formation + Delta-G solvation = 1.402863 kcal Electronic energy + Delta-G solvation = -15316.500490 eV Core-core repulsion = 12791.500641 eV Total energy + Delta-G solvation = -2524.999849 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.47128 -38.33295 -37.64929 -34.39228 -33.73068 -30.80566 -30.52511 -27.56130 -26.04092 -24.09354 -22.26370 -21.96879 -19.60414 -18.85032 -18.11929 -17.31996 -16.72214 -16.35733 -15.48615 -15.18638 -14.55354 -14.44398 -14.34456 -14.05203 -13.42328 -13.34950 -13.02795 -12.75576 -12.68822 -12.44248 -12.33840 -12.20586 -11.40439 -11.29327 -10.87370 -10.64924 -10.41619 -9.97545 -9.05612 -8.02307 -6.17145 0.78695 1.44357 1.45770 1.47109 1.54221 1.70038 2.47856 3.08218 3.25155 3.74992 3.96646 4.27148 4.35759 4.48613 4.64756 4.67661 4.71723 4.78213 4.98887 5.03963 5.08245 5.22356 5.37845 5.50217 5.63751 5.75759 6.02490 6.09843 6.23963 6.42622 6.65514 6.76787 6.96444 7.51457 9.02073 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038924 B = 0.008636 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.176427 B = 3241.477633 C = 3816.130307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.355 5.355 3 N -0.341 5.341 4 C 0.240 3.760 5 O -0.473 6.473 6 C -0.269 4.269 7 C 0.096 3.904 8 C -0.044 4.044 9 C -0.098 4.098 10 C 0.046 3.954 11 H -0.008 1.008 12 C -0.534 4.534 13 H 0.060 0.940 14 C 0.010 3.990 15 N -0.919 5.919 16 Si 0.953 3.047 17 H -0.289 1.289 18 H -0.269 1.269 19 H -0.270 1.270 20 C -0.014 4.014 21 H 0.096 0.904 22 H 0.114 0.886 23 H 0.095 0.905 24 H 0.411 0.589 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.258 0.742 30 H 0.052 0.948 31 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 2.315 -5.473 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.141 5.141 3 N -0.176 5.176 4 C 0.036 3.964 5 O -0.278 6.278 6 C -0.281 4.281 7 C -0.033 4.033 8 C -0.083 4.083 9 C -0.136 4.136 10 C 0.027 3.973 11 H 0.010 0.990 12 C -0.572 4.572 13 H 0.078 0.922 14 C -0.189 4.189 15 N -0.558 5.558 16 Si 0.779 3.221 17 H -0.215 1.215 18 H -0.194 1.194 19 H -0.195 1.195 20 C -0.053 4.053 21 H 0.115 0.885 22 H 0.132 0.868 23 H 0.114 0.886 24 H 0.269 0.731 25 H 0.109 0.891 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.924 3.411 -4.757 14.187 hybrid contribution 1.952 -0.715 -0.290 2.099 sum -10.972 2.695 -5.046 12.374 Atomic orbital electron populations 1.22310 0.70994 1.06144 1.05237 1.48159 1.07442 1.01624 1.56854 1.77271 1.01209 1.09075 1.30052 1.19823 0.86354 0.88794 1.01387 1.84807 1.39682 1.68343 1.34973 1.20807 0.96892 0.93527 1.16890 1.21239 0.89864 0.92185 1.00024 1.20483 0.99339 0.84757 1.03709 1.21535 0.93772 0.98878 0.99399 1.18709 0.92976 0.91956 0.93660 0.98952 1.21592 0.98876 1.10722 1.26007 0.92167 1.25809 1.01034 0.97096 0.94917 1.70093 1.25373 1.30985 1.29365 0.85692 0.78612 0.79616 0.78208 1.21530 1.19355 1.19546 1.19791 0.92699 0.94392 0.98401 0.88526 0.86770 0.88616 0.73098 0.89092 0.86874 0.92831 0.90905 0.93296 0.92950 0.95077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.68 11.31 127.77 1.45 3.12 16 2 N -0.35 -11.40 4.00 -356.01 -1.42 -12.82 16 3 N -0.34 -13.24 12.60 -170.63 -2.15 -15.39 16 4 C 0.24 10.18 8.44 85.12 0.72 10.90 16 5 O -0.47 -18.52 13.66 -93.58 -1.28 -19.80 16 6 C -0.27 -11.95 5.93 -20.05 -0.12 -12.07 16 7 C 0.10 3.47 6.73 41.63 0.28 3.75 16 8 C -0.04 -1.31 5.82 30.01 0.17 -1.14 16 9 C -0.10 -3.70 5.14 30.75 0.16 -3.54 16 10 C 0.05 2.29 2.08 -11.35 -0.02 2.26 16 11 H -0.01 -0.43 8.11 -2.39 -0.02 -0.45 16 12 C -0.53 -29.21 8.52 25.60 0.22 -28.99 16 13 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 14 C 0.01 0.56 5.30 84.66 0.45 1.01 16 15 N -0.92 -55.00 11.47 21.45 0.25 -54.76 16 16 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 17 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 C -0.01 -0.71 5.18 30.04 0.16 -0.55 16 21 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.11 1.46 7.89 -2.39 -0.02 1.44 16 23 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.41 11.36 9.06 -74.06 -0.67 10.68 16 25 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 28 H 0.07 2.56 8.11 -2.39 -0.02 2.54 16 29 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 30 H 0.05 3.08 6.45 -2.39 -0.02 3.07 16 31 H 0.03 1.59 8.12 -2.39 -0.02 1.57 16 Total: -1.00 -72.84 261.52 1.34 -71.49 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.47 Total: 10.68 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.46 Total: -25.25 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.33 Total: -82.97 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.28 Total: -19.80 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -72.84 1.34 -71.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261098581.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.897 kcal (2) G-P(sol) polarization free energy of solvation -72.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds