Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35686 * 116.99663 * 2 1 4 4 C 1.35907 * 126.28415 * 185.26292 * 3 2 1 5 5 C 1.39924 * 107.93190 * 180.11093 * 4 3 2 6 6 C 1.50703 * 125.73773 * 179.86656 * 5 4 3 7 7 C 1.53782 * 113.61419 * 345.58172 * 6 5 4 8 8 C 1.54048 * 86.98599 * 140.01900 * 7 6 5 9 9 C 1.53777 * 113.61260 * 83.18682 * 6 5 4 10 10 N 1.31008 * 108.52865 * 359.60376 * 5 4 3 11 11 N 1.36608 * 126.28224 * 4.93590 * 3 2 1 12 12 C 1.37368 * 126.14490 * 0.05190 * 11 3 2 13 13 H 1.07999 * 119.99814 * 331.23020 * 12 11 3 14 14 C 1.38929 * 119.99888 * 151.22813 * 12 11 3 15 15 N 1.31336 * 120.00107 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46839 * 59.99534 * 16 14 12 18 18 H 1.48496 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46862 * 300.00017 * 16 14 12 20 20 H 1.08993 * 109.47309 * 305.86285 * 1 2 3 21 21 H 1.09002 * 109.47045 * 65.85871 * 1 2 3 22 22 H 1.09003 * 109.46779 * 185.85992 * 1 2 3 23 23 H 1.08003 * 126.03497 * 359.97438 * 4 3 2 24 24 H 1.08994 * 112.85068 * 214.38775 * 6 5 4 25 25 H 1.09001 * 113.61731 * 254.61371 * 7 6 5 26 26 H 1.09000 * 113.61294 * 25.51498 * 7 6 5 27 27 H 1.09004 * 113.61656 * 220.02203 * 8 7 6 28 28 H 1.08995 * 113.68782 * 89.12579 * 8 7 6 29 29 H 1.09005 * 113.61659 * 334.48402 * 9 6 5 30 30 H 1.09002 * 113.61266 * 105.39045 * 9 6 5 31 31 H 0.97005 * 119.99581 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.3821 1.4304 -0.1005 5 6 3.5943 2.8128 -0.0575 6 6 4.9329 3.5007 -0.1349 7 6 6.1254 2.5540 0.0809 8 6 6.8407 3.3310 -1.0406 9 6 5.4441 3.6938 -1.5723 10 7 2.4332 3.4089 0.0556 11 7 1.4344 2.4273 0.0947 12 6 0.0836 2.6500 0.2084 13 1 -0.6172 1.9466 -0.2162 14 6 -0.3808 3.7801 0.8697 15 7 0.4715 4.6353 1.3866 16 14 -2.2177 4.0826 1.0249 17 1 -2.8448 2.9542 1.7589 18 1 -2.4501 5.3466 1.7689 19 1 -2.8183 4.1870 -0.3292 20 1 -0.3633 0.6020 0.8328 21 1 -0.3633 0.4203 -0.9378 22 1 -0.3633 -1.0223 0.1049 23 1 4.1463 0.6730 -0.1945 24 1 4.9792 4.4060 0.4703 25 1 6.5970 2.6613 1.0577 26 1 5.9110 1.5164 -0.1750 27 1 7.4134 2.6951 -1.7158 28 1 7.4091 4.1901 -0.6843 29 1 5.0438 2.9672 -2.2794 30 1 5.3661 4.7207 -1.9292 31 1 0.1471 5.4245 1.8479 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261190602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = 66.286229 kcal Electronic energy + Delta-G solvation = -15244.013092 eV Core-core repulsion = 12721.826797 eV Total energy + Delta-G solvation = -2522.186296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.97280 -38.03876 -36.59659 -33.48032 -30.40196 -28.55694 -26.55690 -25.55228 -25.00554 -23.88977 -20.18756 -19.79058 -18.33489 -17.96375 -15.81855 -15.20183 -14.87333 -14.62847 -14.27344 -13.85515 -13.76805 -12.91196 -12.41666 -12.13512 -11.84112 -11.70004 -11.58115 -11.26951 -11.20330 -10.56387 -10.41480 -10.13915 -10.11384 -9.98536 -9.66589 -9.15708 -8.70368 -7.70826 -6.82589 -6.52512 -4.31144 2.98295 3.05097 3.08276 3.59822 3.85266 4.10145 4.19607 4.67864 4.93171 5.18368 5.22055 5.31061 5.63017 5.87355 5.96012 5.99217 6.12683 6.23555 6.30310 6.31811 6.34809 6.46715 6.72412 6.81202 6.95884 7.02014 7.18924 7.37342 7.70128 8.09080 8.24320 8.74914 9.48733 9.64374 10.48822 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032868 B = 0.009171 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.685435 B = 3052.258623 C = 3738.357258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.183 3.817 4 C -0.309 4.309 5 C 0.019 3.981 6 C -0.013 4.013 7 C -0.129 4.129 8 C -0.144 4.144 9 C -0.127 4.127 10 N -0.252 5.252 11 N -0.188 5.188 12 C -0.365 4.365 13 H 0.120 0.880 14 C 0.058 3.942 15 N -0.794 5.794 16 Si 0.926 3.074 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.267 1.267 20 H 0.077 0.923 21 H 0.047 0.953 22 H 0.078 0.922 23 H 0.123 0.877 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -3.077 -2.207 5.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.013 3.987 4 C -0.341 4.341 5 C -0.141 4.141 6 C -0.033 4.033 7 C -0.167 4.167 8 C -0.181 4.181 9 C -0.166 4.166 10 N -0.081 5.081 11 N 0.032 4.968 12 C -0.494 4.494 13 H 0.137 0.863 14 C -0.157 4.157 15 N -0.422 5.422 16 Si 0.750 3.250 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.192 1.192 20 H 0.096 0.904 21 H 0.066 0.934 22 H 0.097 0.903 23 H 0.141 0.859 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.967 -2.025 -1.980 4.101 hybrid contribution -0.849 -0.501 0.079 0.989 sum 2.117 -2.526 -1.901 3.805 Atomic orbital electron populations 1.23369 0.79542 1.01892 1.02330 1.85956 1.20674 1.23718 1.91519 1.19696 0.90795 0.79323 1.08933 1.19561 0.91234 0.95660 1.27655 1.21425 0.94288 0.91682 1.06700 1.20532 0.88507 0.97549 0.96690 1.22984 0.96141 0.99485 0.98122 1.22868 0.96478 1.00049 0.98727 1.22899 0.95339 1.01278 0.97069 1.77914 0.93958 1.11687 1.24581 1.45001 1.05584 1.00613 1.45572 1.20077 0.78169 1.11978 1.39171 0.86325 1.25575 1.00261 0.95413 0.94454 1.70080 1.34714 1.09439 1.27939 0.86048 0.81298 0.78564 0.79130 1.19201 1.20123 1.19183 0.90408 0.93434 0.90345 0.85881 0.89165 0.91992 0.89621 0.91977 0.90701 0.90161 0.92004 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.34 101.05 0.94 1.41 16 2 O -0.31 -7.23 10.57 -18.76 -0.20 -7.42 16 3 C 0.18 4.77 7.80 -16.26 -0.13 4.65 16 4 C -0.31 -7.55 9.99 -39.79 -0.40 -7.95 16 5 C 0.02 0.46 6.59 -82.31 -0.54 -0.08 16 6 C -0.01 -0.25 4.28 -90.96 -0.39 -0.64 16 7 C -0.13 -2.06 7.48 -25.78 -0.19 -2.25 16 8 C -0.14 -1.98 8.09 -25.78 -0.21 -2.18 16 9 C -0.13 -2.13 7.63 -25.92 -0.20 -2.33 16 10 N -0.25 -7.19 10.93 33.71 0.37 -6.82 16 11 N -0.19 -5.30 3.65 -11.64 -0.04 -5.34 16 12 C -0.37 -9.80 8.14 -14.81 -0.12 -9.93 16 13 H 0.12 2.85 4.42 -52.49 -0.23 2.62 16 14 C 0.06 1.54 5.48 -17.51 -0.10 1.44 16 15 N -0.79 -22.44 12.29 55.49 0.68 -21.76 16 16 Si 0.93 19.24 29.55 -169.99 -5.02 14.21 16 17 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H 0.08 1.60 6.05 -51.93 -0.31 1.29 16 21 H 0.05 0.90 6.99 -51.93 -0.36 0.54 16 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.12 2.67 6.85 -52.48 -0.36 2.31 16 24 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.09 1.38 6.43 -51.93 -0.33 1.05 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.40 8.09 -51.93 -0.42 0.97 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 259.12 15.07 3.90 3.90 Total: -1.00 -31.41 259.12 -5.33 -36.74 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.69 Total: 4.35 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.33 Total: -17.86 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 1.01 Total: -33.92 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.20 Total: -7.42 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.41 -5.33 -36.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.025 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds