Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35686 * 116.99663 * 2 1 4 4 C 1.35907 * 126.28415 * 185.26292 * 3 2 1 5 5 C 1.39924 * 107.93190 * 180.11093 * 4 3 2 6 6 C 1.50703 * 125.73773 * 179.86656 * 5 4 3 7 7 C 1.53782 * 113.61419 * 345.58172 * 6 5 4 8 8 C 1.54048 * 86.98599 * 140.01900 * 7 6 5 9 9 C 1.53777 * 113.61260 * 83.18682 * 6 5 4 10 10 N 1.31008 * 108.52865 * 359.60376 * 5 4 3 11 11 N 1.36608 * 126.28224 * 4.93590 * 3 2 1 12 12 C 1.37368 * 126.14490 * 0.05190 * 11 3 2 13 13 H 1.07999 * 119.99814 * 331.23020 * 12 11 3 14 14 C 1.38929 * 119.99888 * 151.22813 * 12 11 3 15 15 N 1.31336 * 120.00107 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46839 * 59.99534 * 16 14 12 18 18 H 1.48496 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46862 * 300.00017 * 16 14 12 20 20 H 1.08993 * 109.47309 * 305.86285 * 1 2 3 21 21 H 1.09002 * 109.47045 * 65.85871 * 1 2 3 22 22 H 1.09003 * 109.46779 * 185.85992 * 1 2 3 23 23 H 1.08003 * 126.03497 * 359.97438 * 4 3 2 24 24 H 1.08994 * 112.85068 * 214.38775 * 6 5 4 25 25 H 1.09001 * 113.61731 * 254.61371 * 7 6 5 26 26 H 1.09000 * 113.61294 * 25.51498 * 7 6 5 27 27 H 1.09004 * 113.61656 * 220.02203 * 8 7 6 28 28 H 1.08995 * 113.68782 * 89.12579 * 8 7 6 29 29 H 1.09005 * 113.61659 * 334.48402 * 9 6 5 30 30 H 1.09002 * 113.61266 * 105.39045 * 9 6 5 31 31 H 0.97005 * 119.99581 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.3821 1.4304 -0.1005 5 6 3.5943 2.8128 -0.0575 6 6 4.9329 3.5007 -0.1349 7 6 6.1254 2.5540 0.0809 8 6 6.8407 3.3310 -1.0406 9 6 5.4441 3.6938 -1.5723 10 7 2.4332 3.4089 0.0556 11 7 1.4344 2.4273 0.0947 12 6 0.0836 2.6500 0.2084 13 1 -0.6172 1.9466 -0.2162 14 6 -0.3808 3.7801 0.8697 15 7 0.4715 4.6353 1.3866 16 14 -2.2177 4.0826 1.0249 17 1 -2.8448 2.9542 1.7589 18 1 -2.4501 5.3466 1.7689 19 1 -2.8183 4.1870 -0.3292 20 1 -0.3633 0.6020 0.8328 21 1 -0.3633 0.4203 -0.9378 22 1 -0.3633 -1.0223 0.1049 23 1 4.1463 0.6730 -0.1945 24 1 4.9792 4.4060 0.4703 25 1 6.5970 2.6613 1.0577 26 1 5.9110 1.5164 -0.1750 27 1 7.4134 2.6951 -1.7158 28 1 7.4091 4.1901 -0.6843 29 1 5.0438 2.9672 -2.2794 30 1 5.3661 4.7207 -1.9292 31 1 0.1471 5.4245 1.8479 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261190602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = 45.486040 kcal Electronic energy + Delta-G solvation = -15244.915056 eV Core-core repulsion = 12721.826797 eV Total energy + Delta-G solvation = -2523.088259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.86307 -39.51869 -38.33099 -35.42392 -32.35039 -30.40416 -28.33280 -27.17241 -26.32660 -25.66748 -22.03298 -21.43635 -20.12313 -19.65149 -17.63660 -16.94765 -16.61179 -16.13880 -15.95015 -15.62350 -15.33437 -14.72323 -14.15360 -13.84931 -13.38459 -13.17431 -13.09245 -12.92738 -12.80498 -12.19713 -12.11865 -11.74829 -11.54631 -11.37870 -11.10774 -10.95732 -10.63928 -9.66657 -8.80236 -8.48186 -6.34974 1.29409 1.35036 1.49362 1.70073 2.07878 2.24817 2.39739 2.85254 2.97083 3.85938 3.92169 3.97295 4.22599 4.37810 4.45903 4.47371 4.74529 4.76431 4.93366 4.96938 5.01068 5.14216 5.14596 5.19148 5.23606 5.38846 5.46623 5.70718 5.86391 6.16905 6.35573 6.79039 7.54537 7.65690 8.55878 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032868 B = 0.009171 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.685435 B = 3052.258623 C = 3738.357258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.315 6.315 3 C 0.169 3.831 4 C -0.318 4.318 5 C 0.022 3.978 6 C -0.035 4.035 7 C -0.122 4.122 8 C -0.119 4.119 9 C -0.127 4.127 10 N -0.307 5.307 11 N -0.213 5.213 12 C -0.392 4.392 13 H 0.140 0.860 14 C 0.005 3.995 15 N -0.844 5.844 16 Si 1.006 2.994 17 H -0.249 1.249 18 H -0.276 1.276 19 H -0.257 1.257 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.127 0.873 23 H 0.149 0.851 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 -4.004 -2.612 6.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.223 6.223 3 C -0.002 4.002 4 C -0.349 4.349 5 C -0.138 4.138 6 C -0.055 4.055 7 C -0.160 4.160 8 C -0.156 4.156 9 C -0.166 4.166 10 N -0.136 5.136 11 N 0.006 4.994 12 C -0.520 4.520 13 H 0.156 0.844 14 C -0.205 4.205 15 N -0.474 5.474 16 Si 0.825 3.175 17 H -0.172 1.172 18 H -0.201 1.201 19 H -0.181 1.181 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.145 0.855 23 H 0.166 0.834 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.134 -2.978 -2.394 4.942 hybrid contribution -0.858 -0.287 0.183 0.923 sum 2.276 -3.266 -2.211 4.553 Atomic orbital electron populations 1.23568 0.77498 1.04707 1.01676 1.85958 1.22758 1.22262 1.91351 1.20176 0.91688 0.79881 1.08492 1.19980 0.91440 0.96237 1.27292 1.22281 0.95190 0.92228 1.04098 1.20898 0.87317 0.98171 0.99106 1.22972 0.94370 0.98759 0.99927 1.22787 0.94844 1.00520 0.97427 1.22883 0.97356 1.01364 0.94948 1.77818 0.95432 1.13522 1.26872 1.45275 1.06094 1.01156 1.46829 1.20784 0.78516 1.13023 1.39640 0.84353 1.26773 1.05744 0.94631 0.93380 1.70255 1.37409 1.10262 1.29432 0.84860 0.74343 0.78771 0.79571 1.17243 1.20084 1.18134 0.92010 0.93371 0.85500 0.83367 0.90040 0.90660 0.89809 0.89558 0.88681 0.91161 0.91638 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.34 113.37 1.06 1.81 16 2 O -0.31 -14.49 10.57 -90.05 -0.95 -15.45 16 3 C 0.17 8.90 7.80 83.41 0.65 9.55 16 4 C -0.32 -15.60 9.99 22.14 0.22 -15.38 16 5 C 0.02 1.11 6.59 43.09 0.28 1.40 16 6 C -0.03 -1.35 4.28 -11.01 -0.05 -1.40 16 7 C -0.12 -3.64 7.48 31.21 0.23 -3.41 16 8 C -0.12 -2.87 8.09 31.21 0.25 -2.62 16 9 C -0.13 -4.09 7.63 31.12 0.24 -3.85 16 10 N -0.31 -18.15 10.93 -47.27 -0.52 -18.67 16 11 N -0.21 -12.35 3.65 -301.30 -1.10 -13.45 16 12 C -0.39 -21.43 8.14 83.99 0.68 -20.74 16 13 H 0.14 6.67 4.42 -2.91 -0.01 6.66 16 14 C 0.00 0.26 5.48 84.93 0.47 0.72 16 15 N -0.84 -49.40 12.29 21.65 0.27 -49.13 16 16 Si 1.01 39.52 29.55 68.60 2.03 41.54 16 17 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 18 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 20 H 0.06 2.51 6.05 -2.39 -0.01 2.49 16 21 H 0.05 1.77 6.99 -2.39 -0.02 1.75 16 22 H 0.13 3.44 8.14 -2.39 -0.02 3.43 16 23 H 0.15 6.28 6.85 -2.91 -0.02 6.26 16 24 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 2.53 6.43 -2.39 -0.02 2.51 16 27 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.39 8.09 -2.38 -0.02 2.37 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 31 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -70.61 259.12 4.90 -65.71 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.14 Total: 23.36 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 4.04 Total: -33.93 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.35 Total: -81.25 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.95 Total: -15.45 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -70.61 4.90 -65.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.198 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds