Wall clock time and date at job start Mon Mar 30 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31069 * 126.65585 * 269.68308 * 10 9 7 12 12 N 1.28839 * 107.98928 * 179.89960 * 11 10 9 13 13 N 1.28744 * 109.39767 * 0.37536 * 12 11 10 14 14 N 1.29015 * 108.80363 * 359.77005 * 13 12 11 15 15 C 1.46501 * 126.43541 * 180.02562 * 14 13 12 16 16 C 1.54260 * 110.03472 * 57.13993 * 15 14 13 17 17 C 1.54898 * 104.19565 * 217.10694 * 16 15 14 18 18 C 1.54888 * 102.74786 * 37.94007 * 17 16 15 19 19 C 1.53879 * 110.02933 * 299.96941 * 15 14 13 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09000 * 110.01933 * 178.58473 * 15 14 13 24 24 H 1.08999 * 110.48664 * 335.78228 * 16 15 14 25 25 H 1.08993 * 110.49209 * 98.42895 * 16 15 14 26 26 H 1.08994 * 110.75181 * 279.62307 * 17 16 15 27 27 H 1.09003 * 110.75348 * 156.25185 * 17 16 15 28 28 H 1.09002 * 110.48724 * 203.38022 * 18 17 16 29 29 H 1.09002 * 110.60182 * 80.79432 * 18 17 16 30 30 H 1.08997 * 110.03358 * 238.56730 * 19 15 14 31 31 H 1.08996 * 110.03416 * 359.95529 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7344 -4.2385 -1.0644 12 7 3.5309 -5.1652 -0.6562 13 7 3.5419 -5.1831 0.6311 14 7 2.7523 -4.2603 1.0666 15 6 2.4764 -3.9420 2.4697 16 6 3.7914 -3.6094 3.2046 17 6 3.6022 -4.2185 4.6162 18 6 2.8438 -5.5363 4.3210 19 6 1.8739 -5.1672 3.1795 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.7889 -3.0985 2.5328 24 1 4.6385 -4.0732 2.6994 25 1 3.9294 -2.5302 3.2701 26 1 3.0021 -3.5597 5.2438 27 1 4.5667 -4.4236 5.0807 28 1 2.2903 -5.8633 5.2012 29 1 3.5365 -6.3131 3.9968 30 1 0.8945 -4.9180 3.5878 31 1 1.7861 -5.9983 2.4798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261209958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:30 Heat of formation + Delta-G solvation = 91.455001 kcal Electronic energy + Delta-G solvation = -15258.518602 eV Core-core repulsion = 12769.716458 eV Total energy + Delta-G solvation = -2488.802145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.33110 -38.25453 -34.09678 -33.61791 -31.88081 -28.83710 -28.68077 -27.78822 -23.94946 -23.28690 -21.33054 -20.77409 -19.77987 -17.13818 -16.74763 -15.87982 -15.55693 -14.92870 -14.44808 -13.57704 -13.43217 -12.89177 -12.47406 -12.29346 -12.03221 -11.56677 -11.36860 -11.26256 -11.16153 -10.96623 -10.80969 -10.73160 -10.68972 -10.34720 -10.10711 -10.00324 -9.90142 -8.89311 -8.65604 -6.28901 -4.35057 2.08393 2.70975 3.12034 3.20545 3.25793 3.30666 4.26487 4.39212 4.46402 4.82260 5.05303 5.16724 5.21016 5.31172 5.35129 5.40166 5.52331 5.57474 5.77804 5.81061 5.94876 6.11336 6.14922 6.24265 6.35800 6.59120 7.01093 7.05664 7.26173 7.64819 7.92153 8.66392 9.30647 9.47351 10.81097 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.009350 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.077120 B = 2993.849785 C = 3537.517453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.093 3.907 10 C 0.236 3.764 11 N -0.328 5.328 12 N -0.097 5.097 13 N -0.125 5.125 14 N -0.311 5.311 15 C 0.143 3.857 16 C -0.131 4.131 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.132 4.132 20 H 0.268 0.732 21 H 0.045 0.955 22 H 0.062 0.938 23 H 0.129 0.871 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 -5.761 10.645 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.053 3.947 10 C -0.041 4.041 11 N -0.177 5.177 12 N -0.091 5.091 13 N -0.111 5.111 14 N -0.113 5.113 15 C 0.041 3.959 16 C -0.169 4.169 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.171 4.171 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.080 0.920 23 H 0.147 0.853 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.294 -6.625 9.966 12.412 hybrid contribution -0.084 1.564 0.444 1.628 sum 3.210 -5.061 10.411 12.013 Atomic orbital electron populations 1.69916 1.06009 1.27647 1.48873 1.24928 0.94940 0.99353 0.94373 0.86483 0.79526 0.82128 0.78981 1.19874 1.20914 1.20039 1.20783 0.93047 0.89088 1.53345 0.92372 1.18071 0.90427 0.85800 1.00451 1.27289 0.98254 0.97342 0.81206 1.74991 1.10894 1.06968 1.24847 1.78418 1.14849 1.14871 1.00929 1.78554 1.13355 1.11077 1.08113 1.48532 1.29983 1.22875 1.09870 1.22497 0.99497 0.99722 0.74217 1.22729 0.96181 1.02356 0.95636 1.22466 1.00727 0.96575 0.96037 1.22333 0.98009 0.97897 0.97556 1.22516 0.99566 0.96902 0.98067 0.92248 0.93731 0.91971 0.85336 0.90099 0.89884 0.90808 0.90928 0.91197 0.91101 0.89960 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.52 -13.72 9.09 -34.44 -0.31 -14.04 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.09 2.23 5.15 -29.03 -0.15 2.08 16 10 C 0.24 5.37 7.32 -155.44 -1.14 4.23 16 11 N -0.33 -7.95 12.36 32.70 0.40 -7.55 16 12 N -0.10 -2.23 13.43 60.35 0.81 -1.42 16 13 N -0.12 -2.59 12.58 60.35 0.76 -1.83 16 14 N -0.31 -6.13 3.01 -50.73 -0.15 -6.28 16 15 C 0.14 2.21 3.68 -66.81 -0.25 1.96 16 16 C -0.13 -1.77 6.51 -25.07 -0.16 -1.93 16 17 C -0.12 -1.22 6.91 -24.73 -0.17 -1.39 16 18 C -0.12 -1.23 6.83 -25.07 -0.17 -1.41 16 19 C -0.13 -1.65 6.52 -25.61 -0.17 -1.82 16 20 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 21 H 0.04 1.04 7.21 -51.93 -0.37 0.66 16 22 H 0.06 1.61 8.14 -51.93 -0.42 1.18 16 23 H 0.13 2.03 6.83 -51.93 -0.35 1.68 16 24 H 0.08 1.21 7.66 -51.93 -0.40 0.81 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.06 7.80 -51.93 -0.40 0.65 16 LS Contribution 265.53 15.07 4.00 4.00 Total: -1.00 -29.17 265.53 -5.11 -34.28 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.03 Total: -2.56 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.62 Total: -10.63 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 2.56 Total: -40.43 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.17 -5.11 -34.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.735 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds