Wall clock time and date at job start Mon Mar 30 2020 03:04:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 O 1.42905 * 109.47149 * 2 1
4 4 C 1.35454 * 116.99837 * 179.97438 * 3 2 1
5 5 N 1.32318 * 119.19052 * 180.02562 * 4 3 2
6 6 C 1.32303 * 120.76005 * 180.02562 * 5 4 3
7 7 C 1.38596 * 119.17016 * 359.97438 * 6 5 4
8 8 C 1.50706 * 120.73440 * 180.02562 * 7 6 5
9 9 H 1.08995 * 109.47415 * 0.02562 * 8 7 6
10 10 C 1.52997 * 109.46859 * 239.99787 * 8 7 6
11 11 C 1.50704 * 109.46672 * 120.00225 * 8 7 6
12 12 H 1.07996 * 120.00373 * 359.97438 * 11 8 7
13 13 C 1.37877 * 119.99682 * 179.97438 * 11 8 7
14 14 N 1.31519 * 119.99993 * 0.02562 * 13 11 8
15 15 Si 1.86795 * 120.00107 * 179.97438 * 13 11 8
16 16 H 1.48501 * 109.47010 * 60.00050 * 15 13 11
17 17 H 1.48496 * 109.47549 * 180.02562 * 15 13 11
18 18 H 1.48500 * 109.47040 * 300.00312 * 15 13 11
19 19 C 1.38592 * 118.52469 * 0.27664 * 7 6 5
20 20 N 1.32299 * 119.16926 * 359.42524 * 19 7 6
21 21 H 1.08997 * 109.46956 * 60.00158 * 1 2 3
22 22 H 1.08999 * 109.46604 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47193 * 300.00203 * 1 2 3
24 24 H 1.09004 * 109.47045 * 240.00081 * 2 1 3
25 25 H 1.09000 * 109.47458 * 119.99784 * 2 1 3
26 26 H 1.07996 * 120.41240 * 180.02562 * 6 5 4
27 27 H 1.09002 * 109.46917 * 180.02562 * 10 8 7
28 28 H 1.08995 * 109.47505 * 300.00432 * 10 8 7
29 29 H 1.09001 * 109.47000 * 60.00919 * 10 8 7
30 30 H 0.97000 * 119.99941 * 179.97438 * 14 13 11
31 31 H 1.08000 * 120.41298 * 179.72719 * 19 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3493 1.5248 0.0005
5 7 3.8377 2.7545 0.0011
6 6 5.1441 2.9636 0.0011
7 6 6.0025 1.8755 0.0011
8 6 7.4965 2.0730 0.0017
9 1 7.7221 3.1394 0.0026
10 6 8.0971 1.4252 -1.2475
11 6 8.0871 1.4341 1.2322
12 1 7.4448 0.9354 1.9429
13 6 9.4475 1.4864 1.4507
14 7 10.2295 2.0942 0.5855
15 14 10.1795 0.6951 2.9762
16 1 9.8717 -0.7576 2.9766
17 1 11.6517 0.8896 2.9769
18 1 9.5970 1.3248 4.1884
19 6 5.4563 0.6017 -0.0048
20 7 4.1405 0.4643 0.0014
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3632 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8899
24 1 1.8934 -0.5138 -0.8900
25 1 1.8934 -0.5138 0.8900
26 1 5.5367 3.9697 0.0020
27 1 9.1777 1.5676 -1.2468
28 1 7.8715 0.3588 -1.2479
29 1 7.6699 1.8873 -2.1375
30 1 11.1865 2.1313 0.7394
31 1 6.0969 -0.2678 -0.0094
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261218258.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:56
Heat of formation + Delta-G solvation = 0.937121 kcal
Electronic energy + Delta-G solvation = -14715.891324 eV
Core-core repulsion = 12190.871278 eV
Total energy + Delta-G solvation = -2525.020045 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.66039 -38.15798 -34.80608 -33.18646 -32.03801 -31.21098 -28.27127 -25.25175
-24.44105 -23.74735 -22.34149 -20.20943 -18.48559 -17.34262 -16.29159 -16.07472
-15.08599 -14.61613 -14.11467 -13.86066 -13.46269 -12.85800 -12.72108 -12.63629
-12.34002 -11.76233 -11.51963 -11.33906 -11.03253 -10.94255 -10.60200 -10.43297
-10.32768 -10.19806 -9.55685 -9.24572 -8.63646 -8.43373 -8.01081 -6.12122
-4.20569 1.62577 1.72622 2.91892 3.25807 3.30965 3.33911 4.30264
4.42212 4.59925 4.99498 5.00322 5.14493 5.19116 5.37108 5.41473
5.65959 5.76213 5.80308 5.95539 6.03532 6.53022 6.68701 6.74252
6.99376 7.08405 7.26698 7.53964 7.69660 7.75271 7.96540 8.23042
8.61327 8.80977 9.45458 10.93161
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.045319 B = 0.006395 C = 0.006019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 617.691588 B = 4377.068933 C = 4650.655127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.073 3.927
3 O -0.299 6.299
4 C 0.463 3.537
5 N -0.529 5.529
6 C 0.163 3.837
7 C -0.165 4.165
8 C 0.085 3.915
9 H 0.041 0.959
10 C -0.134 4.134
11 C -0.515 4.515
12 H 0.056 0.944
13 C 0.066 3.934
14 N -0.887 5.887
15 Si 0.894 3.106
16 H -0.276 1.276
17 H -0.286 1.286
18 H -0.277 1.277
19 C 0.181 3.819
20 N -0.571 5.571
21 H 0.064 0.936
22 H 0.078 0.922
23 H 0.064 0.936
24 H 0.065 0.935
25 H 0.065 0.935
26 H 0.170 0.830
27 H 0.089 0.911
28 H 0.029 0.971
29 H 0.010 0.990
30 H 0.263 0.737
31 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.848 -3.228 -1.938 11.483
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.003 4.003
3 O -0.203 6.203
4 C 0.160 3.840
5 N -0.253 5.253
6 C -0.001 4.001
7 C -0.169 4.169
8 C 0.065 3.935
9 H 0.059 0.941
10 C -0.191 4.191
11 C -0.553 4.553
12 H 0.074 0.926
13 C -0.136 4.136
14 N -0.525 5.525
15 Si 0.722 3.278
16 H -0.202 1.202
17 H -0.212 1.212
18 H -0.202 1.202
19 C 0.017 3.983
20 N -0.300 5.300
21 H 0.083 0.917
22 H 0.097 0.903
23 H 0.083 0.917
24 H 0.083 0.917
25 H 0.084 0.916
26 H 0.187 0.813
27 H 0.108 0.892
28 H 0.048 0.952
29 H 0.029 0.971
30 H 0.073 0.927
31 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -11.945 -3.170 -1.967 12.514
hybrid contribution 1.463 -0.521 0.888 1.789
sum -10.482 -3.691 -1.079 11.165
Atomic orbital electron populations
1.21809 0.93078 1.02661 1.03291 1.22579 0.94373 0.80747 1.02617
1.85987 1.15608 1.30422 1.88234 1.20481 0.84974 0.85836 0.92744
1.67467 1.16330 1.22238 1.19306 1.23043 0.85900 1.00178 0.91010
1.22280 1.01636 0.93967 0.99000 1.17725 0.82505 0.98089 0.95172
0.94082 1.21817 1.04455 0.97912 0.94961 1.21022 0.92153 1.36368
1.05805 0.92613 1.24930 0.97060 0.95084 0.96526 1.69861 1.04710
1.42647 1.35238 0.86616 0.77986 0.79904 0.83306 1.20162 1.21172
1.20247 1.22862 0.88225 0.98131 0.89083 1.67989 1.07209 1.33951
1.20836 0.91703 0.90324 0.91676 0.91651 0.91614 0.81260 0.89240
0.95228 0.97140 0.92679 0.81275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.47 10.28 37.16 0.38 -1.09 16
2 C 0.07 0.97 6.01 37.16 0.22 1.20 16
3 O -0.30 -5.26 10.20 -18.05 -0.18 -5.45 16
4 C 0.46 9.12 8.49 -91.26 -0.77 8.35 16
5 N -0.53 -10.65 10.46 -14.73 -0.15 -10.81 16
6 C 0.16 3.15 10.95 -17.22 -0.19 2.96 16
7 C -0.16 -3.39 4.74 -104.36 -0.50 -3.89 16
8 C 0.08 1.96 2.50 -92.92 -0.23 1.72 16
9 H 0.04 1.00 7.94 -51.93 -0.41 0.59 16
10 C -0.13 -2.98 8.79 37.16 0.33 -2.65 16
11 C -0.52 -13.15 8.27 -34.44 -0.28 -13.44 16
12 H 0.06 1.43 7.62 -52.49 -0.40 1.03 16
13 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16
14 N -0.89 -23.79 11.32 55.43 0.63 -23.16 16
15 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16
16 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16
17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16
18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
19 C 0.18 3.58 10.06 -17.22 -0.17 3.41 16
20 N -0.57 -11.05 9.23 -14.74 -0.14 -11.19 16
21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
22 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
24 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16
25 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16
26 H 0.17 2.83 8.00 -52.49 -0.42 2.41 16
27 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16
28 H 0.03 0.62 7.46 -51.93 -0.39 0.23 16
29 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16
30 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16
31 H 0.17 3.15 7.65 -52.49 -0.40 2.75 16
LS Contribution 269.27 15.07 4.06 4.06
Total: -1.00 -28.15 269.27 -6.12 -34.27
By element:
Atomic # 1 Polarization: 2.75 SS G_CDS: -4.00 Total: -1.26 kcal
Atomic # 6 Polarization: -0.49 SS G_CDS: -1.31 Total: -1.80 kcal
Atomic # 7 Polarization: -45.50 SS G_CDS: 0.34 Total: -45.16 kcal
Atomic # 8 Polarization: -5.26 SS G_CDS: -0.18 Total: -5.45 kcal
Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal
Total LS contribution 4.06 Total: 4.06 kcal
Total: -28.15 -6.12 -34.27 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261218258.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.210 kcal
(2) G-P(sol) polarization free energy of solvation -28.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.061 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.273 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.937 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds