Wall clock time and date at job start Mon Mar 30 2020 03:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47149 * 2 1 4 4 C 1.35454 * 116.99837 * 179.97438 * 3 2 1 5 5 N 1.32318 * 119.19052 * 180.02562 * 4 3 2 6 6 C 1.32303 * 120.76005 * 180.02562 * 5 4 3 7 7 C 1.38596 * 119.17016 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.73440 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.47415 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.46859 * 239.99787 * 8 7 6 11 11 C 1.50704 * 109.46672 * 120.00225 * 8 7 6 12 12 H 1.07996 * 120.00373 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99682 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99993 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00107 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47010 * 60.00050 * 15 13 11 17 17 H 1.48496 * 109.47549 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47040 * 300.00312 * 15 13 11 19 19 C 1.38592 * 118.52469 * 0.27664 * 7 6 5 20 20 N 1.32299 * 119.16926 * 359.42524 * 19 7 6 21 21 H 1.08997 * 109.46956 * 60.00158 * 1 2 3 22 22 H 1.08999 * 109.46604 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47193 * 300.00203 * 1 2 3 24 24 H 1.09004 * 109.47045 * 240.00081 * 2 1 3 25 25 H 1.09000 * 109.47458 * 119.99784 * 2 1 3 26 26 H 1.07996 * 120.41240 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.46917 * 180.02562 * 10 8 7 28 28 H 1.08995 * 109.47505 * 300.00432 * 10 8 7 29 29 H 1.09001 * 109.47000 * 60.00919 * 10 8 7 30 30 H 0.97000 * 119.99941 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.41298 * 179.72719 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3493 1.5248 0.0005 5 7 3.8377 2.7545 0.0011 6 6 5.1441 2.9636 0.0011 7 6 6.0025 1.8755 0.0011 8 6 7.4965 2.0730 0.0017 9 1 7.7221 3.1394 0.0026 10 6 8.0971 1.4252 -1.2475 11 6 8.0871 1.4341 1.2322 12 1 7.4448 0.9354 1.9429 13 6 9.4475 1.4864 1.4507 14 7 10.2295 2.0942 0.5855 15 14 10.1795 0.6951 2.9762 16 1 9.8717 -0.7576 2.9766 17 1 11.6517 0.8896 2.9769 18 1 9.5970 1.3248 4.1884 19 6 5.4563 0.6017 -0.0048 20 7 4.1405 0.4643 0.0014 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 5.5367 3.9697 0.0020 27 1 9.1777 1.5676 -1.2468 28 1 7.8715 0.3588 -1.2479 29 1 7.6699 1.8873 -2.1375 30 1 11.1865 2.1313 0.7394 31 1 6.0969 -0.2678 -0.0094 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218258.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:55 Heat of formation + Delta-G solvation = -17.736547 kcal Electronic energy + Delta-G solvation = -14716.701075 eV Core-core repulsion = 12190.871278 eV Total energy + Delta-G solvation = -2525.829796 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.16919 -39.52699 -36.58148 -34.72226 -33.67391 -32.44367 -29.89978 -27.18927 -25.88890 -25.25117 -23.52533 -21.96516 -19.86693 -18.95254 -17.96790 -17.53458 -16.87864 -16.12777 -15.40896 -15.29553 -15.05229 -14.50253 -14.33473 -13.68452 -13.46992 -13.39010 -13.08976 -12.78051 -12.74240 -12.51952 -12.25150 -12.15836 -11.86092 -11.65755 -11.30624 -11.08443 -10.47828 -10.11492 -9.59724 -8.08825 -6.22725 0.09486 0.16034 1.45756 1.47302 1.53854 1.60540 2.44729 2.84075 3.11056 3.20957 3.75042 3.85456 4.06431 4.12667 4.20451 4.32703 4.43884 4.80681 4.91286 4.93908 5.01771 5.07790 5.20424 5.25196 5.37420 5.60578 5.79020 5.87562 6.04832 6.23491 6.32149 6.84106 7.09299 7.45825 8.95057 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.045319 B = 0.006395 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.691588 B = 4377.068933 C = 4650.655127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 O -0.308 6.308 4 C 0.459 3.541 5 N -0.542 5.542 6 C 0.169 3.831 7 C -0.180 4.180 8 C 0.088 3.912 9 H 0.023 0.977 10 C -0.125 4.125 11 C -0.526 4.526 12 H 0.050 0.950 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 0.949 3.051 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.277 1.277 19 C 0.183 3.817 20 N -0.569 5.569 21 H 0.067 0.933 22 H 0.107 0.893 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.192 0.808 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 -3.955 -1.681 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.011 4.011 3 O -0.211 6.211 4 C 0.156 3.844 5 N -0.268 5.268 6 C 0.005 3.995 7 C -0.184 4.184 8 C 0.069 3.931 9 H 0.041 0.959 10 C -0.183 4.183 11 C -0.564 4.564 12 H 0.068 0.932 13 C -0.176 4.176 14 N -0.549 5.549 15 Si 0.775 3.225 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.203 1.203 19 C 0.019 3.981 20 N -0.298 5.298 21 H 0.086 0.914 22 H 0.126 0.874 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.208 0.792 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.089 -3.910 -1.712 13.767 hybrid contribution 1.713 -0.310 0.792 1.913 sum -11.375 -4.220 -0.920 12.167 Atomic orbital electron populations 1.21839 0.90096 1.04606 1.03476 1.22957 0.96644 0.78914 1.02619 1.86024 1.14340 1.33001 1.87712 1.20806 0.85923 0.85837 0.91849 1.67555 1.16479 1.22646 1.20107 1.23352 0.85619 1.00897 0.89620 1.22047 1.00339 0.94892 1.01158 1.17552 0.84161 0.96728 0.94680 0.95872 1.21669 1.02739 0.98434 0.95415 1.21283 0.92339 1.36195 1.06546 0.93169 1.25577 0.97548 0.95663 0.98843 1.69972 1.04785 1.43648 1.36540 0.85751 0.77212 0.79242 0.80282 1.19607 1.20997 1.20298 1.22985 0.88575 0.98128 0.88434 1.68060 1.06856 1.33753 1.21177 0.91416 0.87446 0.91575 0.91471 0.91768 0.79172 0.91738 0.94573 0.95505 0.92775 0.80491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.06 1.59 6.01 71.98 0.43 2.02 16 3 O -0.31 -10.38 10.20 -87.52 -0.89 -11.27 16 4 C 0.46 17.52 8.49 180.57 1.53 19.05 16 5 N -0.54 -21.22 10.46 -313.48 -3.28 -24.50 16 6 C 0.17 6.37 10.95 84.71 0.93 7.30 16 7 C -0.18 -7.28 4.74 -19.69 -0.09 -7.37 16 8 C 0.09 4.07 2.50 -12.28 -0.03 4.04 16 9 H 0.02 1.14 7.94 -2.39 -0.02 1.12 16 10 C -0.12 -5.50 8.79 71.98 0.63 -4.87 16 11 C -0.53 -26.68 8.27 25.60 0.21 -26.47 16 12 H 0.05 2.55 7.62 -2.91 -0.02 2.53 16 13 C 0.02 1.21 5.30 84.65 0.45 1.66 16 14 N -0.91 -49.02 11.32 21.45 0.24 -48.78 16 15 Si 0.95 41.40 29.54 68.60 2.03 43.43 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 C 0.18 7.03 10.06 84.71 0.85 7.88 16 20 N -0.57 -21.30 9.23 -313.49 -2.89 -24.20 16 21 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.64 8.09 -2.38 -0.02 1.62 16 25 H 0.06 1.61 8.09 -2.39 -0.02 1.59 16 26 H 0.19 6.14 8.00 -2.91 -0.02 6.12 16 27 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 28 H 0.04 1.49 7.46 -2.39 -0.02 1.47 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 31 H 0.18 6.41 7.65 -2.91 -0.02 6.39 16 Total: -1.00 -58.16 269.27 1.97 -56.19 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.11 Total: 7.58 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.65 Total: 1.56 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -5.93 Total: -97.48 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.89 Total: -11.27 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -58.16 1.97 -56.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218258.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.448 kcal (2) G-P(sol) polarization free energy of solvation -58.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds