Wall clock time and date at job start Mon Mar 30 2020 03:04:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 O 1.42905 * 109.47149 * 2 1
4 4 C 1.35454 * 116.99837 * 179.97438 * 3 2 1
5 5 N 1.32318 * 119.19052 * 180.02562 * 4 3 2
6 6 C 1.32303 * 120.76005 * 180.02562 * 5 4 3
7 7 C 1.38596 * 119.17016 * 359.97438 * 6 5 4
8 8 C 1.50706 * 120.73440 * 180.02562 * 7 6 5
9 9 H 1.08995 * 109.47415 * 0.02562 * 8 7 6
10 10 C 1.52997 * 109.46859 * 239.99787 * 8 7 6
11 11 C 1.50704 * 109.46672 * 120.00225 * 8 7 6
12 12 H 1.07996 * 120.00373 * 359.97438 * 11 8 7
13 13 C 1.37877 * 119.99682 * 179.97438 * 11 8 7
14 14 N 1.31519 * 119.99993 * 0.02562 * 13 11 8
15 15 Si 1.86795 * 120.00107 * 179.97438 * 13 11 8
16 16 H 1.48501 * 109.47010 * 60.00050 * 15 13 11
17 17 H 1.48496 * 109.47549 * 180.02562 * 15 13 11
18 18 H 1.48500 * 109.47040 * 300.00312 * 15 13 11
19 19 C 1.38592 * 118.52469 * 0.27664 * 7 6 5
20 20 N 1.32299 * 119.16926 * 359.42524 * 19 7 6
21 21 H 1.08997 * 109.46956 * 60.00158 * 1 2 3
22 22 H 1.08999 * 109.46604 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47193 * 300.00203 * 1 2 3
24 24 H 1.09004 * 109.47045 * 240.00081 * 2 1 3
25 25 H 1.09000 * 109.47458 * 119.99784 * 2 1 3
26 26 H 1.07996 * 120.41240 * 180.02562 * 6 5 4
27 27 H 1.09002 * 109.46917 * 180.02562 * 10 8 7
28 28 H 1.08995 * 109.47505 * 300.00432 * 10 8 7
29 29 H 1.09001 * 109.47000 * 60.00919 * 10 8 7
30 30 H 0.97000 * 119.99941 * 179.97438 * 14 13 11
31 31 H 1.08000 * 120.41298 * 179.72719 * 19 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3493 1.5248 0.0005
5 7 3.8377 2.7545 0.0011
6 6 5.1441 2.9636 0.0011
7 6 6.0025 1.8755 0.0011
8 6 7.4965 2.0730 0.0017
9 1 7.7221 3.1394 0.0026
10 6 8.0971 1.4252 -1.2475
11 6 8.0871 1.4341 1.2322
12 1 7.4448 0.9354 1.9429
13 6 9.4475 1.4864 1.4507
14 7 10.2295 2.0942 0.5855
15 14 10.1795 0.6951 2.9762
16 1 9.8717 -0.7576 2.9766
17 1 11.6517 0.8896 2.9769
18 1 9.5970 1.3248 4.1884
19 6 5.4563 0.6017 -0.0048
20 7 4.1405 0.4643 0.0014
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3632 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8899
24 1 1.8934 -0.5138 -0.8900
25 1 1.8934 -0.5138 0.8900
26 1 5.5367 3.9697 0.0020
27 1 9.1777 1.5676 -1.2468
28 1 7.8715 0.3588 -1.2479
29 1 7.6699 1.8873 -2.1375
30 1 11.1865 2.1313 0.7394
31 1 6.0969 -0.2678 -0.0094
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261218258.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:55
Heat of formation + Delta-G solvation = -17.736547 kcal
Electronic energy + Delta-G solvation = -14716.701075 eV
Core-core repulsion = 12190.871278 eV
Total energy + Delta-G solvation = -2525.829796 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.16919 -39.52699 -36.58148 -34.72226 -33.67391 -32.44367 -29.89978 -27.18927
-25.88890 -25.25117 -23.52533 -21.96516 -19.86693 -18.95254 -17.96790 -17.53458
-16.87864 -16.12777 -15.40896 -15.29553 -15.05229 -14.50253 -14.33473 -13.68452
-13.46992 -13.39010 -13.08976 -12.78051 -12.74240 -12.51952 -12.25150 -12.15836
-11.86092 -11.65755 -11.30624 -11.08443 -10.47828 -10.11492 -9.59724 -8.08825
-6.22725 0.09486 0.16034 1.45756 1.47302 1.53854 1.60540 2.44729
2.84075 3.11056 3.20957 3.75042 3.85456 4.06431 4.12667 4.20451
4.32703 4.43884 4.80681 4.91286 4.93908 5.01771 5.07790 5.20424
5.25196 5.37420 5.60578 5.79020 5.87562 6.04832 6.23491 6.32149
6.84106 7.09299 7.45825 8.95057
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.045319 B = 0.006395 C = 0.006019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 617.691588 B = 4377.068933 C = 4650.655127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.064 3.936
3 O -0.308 6.308
4 C 0.459 3.541
5 N -0.542 5.542
6 C 0.169 3.831
7 C -0.180 4.180
8 C 0.088 3.912
9 H 0.023 0.977
10 C -0.125 4.125
11 C -0.526 4.526
12 H 0.050 0.950
13 C 0.023 3.977
14 N -0.911 5.911
15 Si 0.949 3.051
16 H -0.271 1.271
17 H -0.285 1.285
18 H -0.277 1.277
19 C 0.183 3.817
20 N -0.569 5.569
21 H 0.067 0.933
22 H 0.107 0.893
23 H 0.065 0.935
24 H 0.067 0.933
25 H 0.064 0.936
26 H 0.192 0.808
27 H 0.064 0.936
28 H 0.035 0.965
29 H 0.026 0.974
30 H 0.263 0.737
31 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.965 -3.955 -1.681 12.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.011 4.011
3 O -0.211 6.211
4 C 0.156 3.844
5 N -0.268 5.268
6 C 0.005 3.995
7 C -0.184 4.184
8 C 0.069 3.931
9 H 0.041 0.959
10 C -0.183 4.183
11 C -0.564 4.564
12 H 0.068 0.932
13 C -0.176 4.176
14 N -0.549 5.549
15 Si 0.775 3.225
16 H -0.196 1.196
17 H -0.210 1.210
18 H -0.203 1.203
19 C 0.019 3.981
20 N -0.298 5.298
21 H 0.086 0.914
22 H 0.126 0.874
23 H 0.084 0.916
24 H 0.085 0.915
25 H 0.082 0.918
26 H 0.208 0.792
27 H 0.083 0.917
28 H 0.054 0.946
29 H 0.045 0.955
30 H 0.072 0.928
31 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges -13.089 -3.910 -1.712 13.767
hybrid contribution 1.713 -0.310 0.792 1.913
sum -11.375 -4.220 -0.920 12.167
Atomic orbital electron populations
1.21839 0.90096 1.04606 1.03476 1.22957 0.96644 0.78914 1.02619
1.86024 1.14340 1.33001 1.87712 1.20806 0.85923 0.85837 0.91849
1.67555 1.16479 1.22646 1.20107 1.23352 0.85619 1.00897 0.89620
1.22047 1.00339 0.94892 1.01158 1.17552 0.84161 0.96728 0.94680
0.95872 1.21669 1.02739 0.98434 0.95415 1.21283 0.92339 1.36195
1.06546 0.93169 1.25577 0.97548 0.95663 0.98843 1.69972 1.04785
1.43648 1.36540 0.85751 0.77212 0.79242 0.80282 1.19607 1.20997
1.20298 1.22985 0.88575 0.98128 0.88434 1.68060 1.06856 1.33753
1.21177 0.91416 0.87446 0.91575 0.91471 0.91768 0.79172 0.91738
0.94573 0.95505 0.92775 0.80491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.41 10.28 71.98 0.74 -1.67 16
2 C 0.06 1.59 6.01 71.98 0.43 2.02 16
3 O -0.31 -10.38 10.20 -87.52 -0.89 -11.27 16
4 C 0.46 17.52 8.49 180.57 1.53 19.05 16
5 N -0.54 -21.22 10.46 -313.48 -3.28 -24.50 16
6 C 0.17 6.37 10.95 84.71 0.93 7.30 16
7 C -0.18 -7.28 4.74 -19.69 -0.09 -7.37 16
8 C 0.09 4.07 2.50 -12.28 -0.03 4.04 16
9 H 0.02 1.14 7.94 -2.39 -0.02 1.12 16
10 C -0.12 -5.50 8.79 71.98 0.63 -4.87 16
11 C -0.53 -26.68 8.27 25.60 0.21 -26.47 16
12 H 0.05 2.55 7.62 -2.91 -0.02 2.53 16
13 C 0.02 1.21 5.30 84.65 0.45 1.66 16
14 N -0.91 -49.02 11.32 21.45 0.24 -48.78 16
15 Si 0.95 41.40 29.54 68.60 2.03 43.43 16
16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16
17 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16
18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16
19 C 0.18 7.03 10.06 84.71 0.85 7.88 16
20 N -0.57 -21.30 9.23 -313.49 -2.89 -24.20 16
21 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
22 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16
23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
24 H 0.07 1.64 8.09 -2.38 -0.02 1.62 16
25 H 0.06 1.61 8.09 -2.39 -0.02 1.59 16
26 H 0.19 6.14 8.00 -2.91 -0.02 6.12 16
27 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16
28 H 0.04 1.49 7.46 -2.39 -0.02 1.47 16
29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
30 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16
31 H 0.18 6.41 7.65 -2.91 -0.02 6.39 16
Total: -1.00 -58.16 269.27 1.97 -56.19
By element:
Atomic # 1 Polarization: 6.46 SS G_CDS: 1.11 Total: 7.58 kcal
Atomic # 6 Polarization: -4.09 SS G_CDS: 5.65 Total: 1.56 kcal
Atomic # 7 Polarization: -91.55 SS G_CDS: -5.93 Total: -97.48 kcal
Atomic # 8 Polarization: -10.38 SS G_CDS: -0.89 Total: -11.27 kcal
Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal
Total: -58.16 1.97 -56.19 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261218258.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.448 kcal
(2) G-P(sol) polarization free energy of solvation -58.158 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds