Wall clock time and date at job start Mon Mar 30 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47057 * 2 1 4 4 C 1.35514 * 116.99810 * 180.02562 * 3 2 1 5 5 C 1.39425 * 120.50906 * 180.02562 * 4 3 2 6 6 C 1.38191 * 118.34866 * 180.02562 * 5 4 3 7 7 C 1.50695 * 120.41015 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47117 * 205.02010 * 7 6 5 9 9 C 1.53010 * 109.47219 * 325.01429 * 7 6 5 10 10 C 1.50692 * 109.47443 * 85.01798 * 7 6 5 11 11 H 1.08003 * 120.00457 * 359.97438 * 10 7 6 12 12 C 1.37884 * 119.99929 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99805 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00118 * 359.97438 * 12 10 7 15 15 H 1.48494 * 109.47012 * 89.99957 * 14 12 10 16 16 H 1.48497 * 109.46958 * 210.00366 * 14 12 10 17 17 H 1.48499 * 109.46817 * 329.99913 * 14 12 10 18 18 N 1.32516 * 119.17560 * 359.97438 * 6 5 4 19 19 C 1.31761 * 120.97025 * 0.02562 * 18 6 5 20 20 N 1.31791 * 121.81114 * 0.27520 * 19 18 6 21 21 H 1.08996 * 109.46875 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46944 * 299.99985 * 1 2 3 23 23 H 1.08996 * 109.47083 * 60.00047 * 1 2 3 24 24 H 1.09003 * 109.46798 * 240.00294 * 2 1 3 25 25 H 1.08996 * 109.47083 * 119.99953 * 2 1 3 26 26 H 1.07996 * 120.82578 * 359.97438 * 5 4 3 27 27 H 1.09002 * 109.46602 * 60.00265 * 9 7 6 28 28 H 1.08993 * 109.47197 * 179.97438 * 9 7 6 29 29 H 1.08995 * 109.47090 * 300.00522 * 9 7 6 30 30 H 0.97000 * 119.99510 * 179.97438 * 13 12 10 31 31 H 1.08002 * 119.09195 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3498 1.5248 -0.0005 5 6 3.8942 2.8084 0.0000 6 6 5.2700 2.9376 -0.0012 7 6 5.9079 4.3029 -0.0013 8 1 6.9051 4.2381 -0.4368 9 6 5.0524 5.2656 -0.8274 10 6 6.0100 4.8099 1.4142 11 1 5.6487 4.2042 2.2321 12 6 6.5638 6.0475 1.6649 13 7 6.6533 6.4897 2.9003 14 14 7.1881 7.0954 0.2503 15 1 6.0896 7.9631 -0.2453 16 1 8.3138 7.9419 0.7206 17 1 7.6572 6.2141 -0.8491 18 7 6.0214 1.8461 -0.0022 19 6 5.4753 0.6470 -0.0026 20 7 4.1682 0.4790 -0.0074 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.2565 3.6800 0.0004 27 1 4.0552 5.3305 -0.3919 28 1 5.5135 6.2532 -0.8271 29 1 4.9785 4.8989 -1.8511 30 1 7.0432 7.3602 3.0768 31 1 6.1165 -0.2220 -0.0038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218506.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:25 Heat of formation + Delta-G solvation = 5.090201 kcal Electronic energy + Delta-G solvation = -14822.952948 eV Core-core repulsion = 12298.112994 eV Total energy + Delta-G solvation = -2524.839954 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.73564 -38.36423 -35.17548 -32.59518 -32.15968 -31.03343 -29.68236 -25.41393 -24.45835 -23.54164 -22.74014 -20.44083 -17.98760 -17.13251 -16.65362 -16.21613 -15.05664 -14.80889 -14.75431 -14.10488 -13.82839 -13.11823 -12.90431 -12.69337 -12.60862 -12.28982 -11.67157 -11.41358 -11.15550 -10.94405 -10.72819 -10.34977 -10.03866 -9.79525 -9.52030 -9.05673 -8.78123 -8.64697 -8.57702 -6.14832 -4.16634 1.50765 1.71232 3.08975 3.23367 3.34882 3.36967 4.33242 4.34103 4.42945 4.68451 4.94527 4.98551 5.17757 5.23408 5.38255 5.58484 5.73977 5.75058 5.86270 5.94768 6.05311 6.25318 6.30919 6.50686 6.82365 6.88977 7.13673 7.37402 7.56471 7.62903 8.37819 8.65643 8.85494 9.43208 10.97755 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042635 B = 0.006969 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.587354 B = 4016.782963 C = 4191.162086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.305 6.305 4 C 0.351 3.649 5 C -0.240 4.240 6 C 0.253 3.747 7 C 0.049 3.951 8 H 0.056 0.944 9 C -0.150 4.150 10 C -0.509 4.509 11 H 0.074 0.926 12 C 0.076 3.924 13 N -0.894 5.894 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.295 1.295 17 H -0.264 1.264 18 N -0.540 5.540 19 C 0.322 3.678 20 N -0.597 5.597 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.151 0.849 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.267 0.733 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -9.873 -7.589 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.210 6.210 4 C 0.166 3.834 5 C -0.263 4.263 6 C 0.111 3.889 7 C 0.030 3.970 8 H 0.074 0.926 9 C -0.207 4.207 10 C -0.547 4.547 11 H 0.092 0.908 12 C -0.127 4.127 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.204 1.204 16 H -0.222 1.222 17 H -0.189 1.189 18 N -0.258 5.258 19 C 0.034 3.966 20 N -0.328 5.328 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.169 0.831 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.848 -10.313 -7.472 14.959 hybrid contribution -0.200 1.025 -0.497 1.156 sum -8.047 -9.288 -7.968 14.646 Atomic orbital electron populations 1.21815 0.93169 1.02660 1.03353 1.22587 0.94599 0.81376 1.02456 1.86221 1.16968 1.30408 1.87439 1.20055 0.83821 0.90331 0.89202 1.21857 0.97198 0.96167 1.11071 1.21954 0.88649 0.95641 0.82611 1.18363 0.95421 0.84912 0.98332 0.92575 1.22252 1.01153 0.99529 0.97811 1.20636 1.41655 1.02908 0.89495 0.90792 1.24927 0.94806 0.97316 0.95654 1.69876 1.44570 1.19711 1.18981 0.86823 0.78148 0.80486 0.82688 1.20357 1.22220 1.18869 1.68328 1.41316 0.98717 1.17416 1.24569 0.87184 0.95166 0.89702 1.67983 1.07065 1.34249 1.23515 0.90464 0.91584 0.91712 0.91728 0.91644 0.83146 0.92161 0.93262 0.94678 0.92346 0.79191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.03 16 2 C 0.07 0.81 6.06 37.16 0.23 1.04 16 3 O -0.30 -4.96 10.13 -18.23 -0.18 -5.15 16 4 C 0.35 6.46 7.53 -16.69 -0.13 6.33 16 5 C -0.24 -4.77 9.21 -39.16 -0.36 -5.13 16 6 C 0.25 5.51 5.75 -82.32 -0.47 5.04 16 7 C 0.05 1.16 2.24 -92.92 -0.21 0.96 16 8 H 0.06 1.37 7.20 -51.93 -0.37 0.99 16 9 C -0.15 -3.12 8.12 37.16 0.30 -2.82 16 10 C -0.51 -14.16 9.13 -34.44 -0.31 -14.48 16 11 H 0.07 2.28 7.98 -52.48 -0.42 1.86 16 12 C 0.08 2.14 5.45 -17.81 -0.10 2.04 16 13 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 14 Si 0.89 21.31 24.37 -169.99 -4.14 17.17 16 15 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.26 -6.05 6.53 56.52 0.37 -5.68 16 18 N -0.54 -11.23 10.37 -10.87 -0.11 -11.35 16 19 C 0.32 5.61 12.28 -92.19 -1.13 4.48 16 20 N -0.60 -10.49 9.39 -14.64 -0.14 -10.63 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.78 8.12 -51.93 -0.42 0.35 16 25 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 26 H 0.15 2.83 6.43 -52.49 -0.34 2.50 16 27 H 0.06 1.19 6.58 -51.93 -0.34 0.85 16 28 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.19 2.49 8.06 -52.49 -0.42 2.06 16 LS Contribution 261.41 15.07 3.94 3.94 Total: -1.00 -30.92 261.41 -5.45 -36.37 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.78 Total: -0.62 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.80 Total: -3.58 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.52 Total: -48.13 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.18 Total: -5.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.17 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.92 -5.45 -36.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218506.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.460 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds