Wall clock time and date at job start Mon Mar 30 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47057 * 2 1 4 4 C 1.35514 * 116.99810 * 180.02562 * 3 2 1 5 5 C 1.39425 * 120.50906 * 180.02562 * 4 3 2 6 6 C 1.38191 * 118.34866 * 180.02562 * 5 4 3 7 7 C 1.50695 * 120.41015 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47117 * 205.02010 * 7 6 5 9 9 C 1.53010 * 109.47219 * 325.01429 * 7 6 5 10 10 C 1.50692 * 109.47443 * 85.01798 * 7 6 5 11 11 H 1.08003 * 120.00457 * 359.97438 * 10 7 6 12 12 C 1.37884 * 119.99929 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99805 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00118 * 359.97438 * 12 10 7 15 15 H 1.48494 * 109.47012 * 89.99957 * 14 12 10 16 16 H 1.48497 * 109.46958 * 210.00366 * 14 12 10 17 17 H 1.48499 * 109.46817 * 329.99913 * 14 12 10 18 18 N 1.32516 * 119.17560 * 359.97438 * 6 5 4 19 19 C 1.31761 * 120.97025 * 0.02562 * 18 6 5 20 20 N 1.31791 * 121.81114 * 0.27520 * 19 18 6 21 21 H 1.08996 * 109.46875 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46944 * 299.99985 * 1 2 3 23 23 H 1.08996 * 109.47083 * 60.00047 * 1 2 3 24 24 H 1.09003 * 109.46798 * 240.00294 * 2 1 3 25 25 H 1.08996 * 109.47083 * 119.99953 * 2 1 3 26 26 H 1.07996 * 120.82578 * 359.97438 * 5 4 3 27 27 H 1.09002 * 109.46602 * 60.00265 * 9 7 6 28 28 H 1.08993 * 109.47197 * 179.97438 * 9 7 6 29 29 H 1.08995 * 109.47090 * 300.00522 * 9 7 6 30 30 H 0.97000 * 119.99510 * 179.97438 * 13 12 10 31 31 H 1.08002 * 119.09195 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3498 1.5248 -0.0005 5 6 3.8942 2.8084 0.0000 6 6 5.2700 2.9376 -0.0012 7 6 5.9079 4.3029 -0.0013 8 1 6.9051 4.2381 -0.4368 9 6 5.0524 5.2656 -0.8274 10 6 6.0100 4.8099 1.4142 11 1 5.6487 4.2042 2.2321 12 6 6.5638 6.0475 1.6649 13 7 6.6533 6.4897 2.9003 14 14 7.1881 7.0954 0.2503 15 1 6.0896 7.9631 -0.2453 16 1 8.3138 7.9419 0.7206 17 1 7.6572 6.2141 -0.8491 18 7 6.0214 1.8461 -0.0022 19 6 5.4753 0.6470 -0.0026 20 7 4.1682 0.4790 -0.0074 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.2565 3.6800 0.0004 27 1 4.0552 5.3305 -0.3919 28 1 5.5135 6.2532 -0.8271 29 1 4.9785 4.8989 -1.8511 30 1 7.0432 7.3602 3.0768 31 1 6.1165 -0.2220 -0.0038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218506.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:25 Heat of formation + Delta-G solvation = -16.781874 kcal Electronic energy + Delta-G solvation = -14823.901392 eV Core-core repulsion = 12298.112994 eV Total energy + Delta-G solvation = -2525.788399 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.18333 -39.68090 -36.92365 -34.29976 -33.65021 -32.43493 -31.15054 -27.28003 -26.04490 -24.97592 -23.92093 -22.04648 -19.41432 -18.86012 -18.48172 -17.42091 -16.78757 -16.45252 -16.10052 -15.46931 -15.18952 -14.82293 -14.67320 -14.14588 -13.75468 -13.44219 -13.18155 -12.95872 -12.71332 -12.48988 -12.06841 -11.95961 -11.64569 -11.50641 -11.40337 -10.80247 -10.75391 -10.30159 -10.05727 -8.32278 -6.39566 0.03436 0.18856 1.34159 1.41280 1.51710 1.84007 2.32669 2.84101 3.01392 3.09174 3.26940 3.84490 4.06342 4.14884 4.17044 4.28659 4.43000 4.52324 4.64759 4.67124 4.84555 4.86996 4.93514 5.09309 5.19238 5.35472 5.45660 5.53861 5.95645 6.18702 6.19312 6.62833 7.17425 7.24573 8.84376 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042635 B = 0.006969 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.587354 B = 4016.782963 C = 4191.162086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 O -0.311 6.311 4 C 0.355 3.645 5 C -0.252 4.252 6 C 0.232 3.768 7 C 0.050 3.950 8 H 0.048 0.952 9 C -0.145 4.145 10 C -0.512 4.512 11 H 0.024 0.976 12 C 0.019 3.981 13 N -0.945 5.945 14 Si 0.954 3.046 15 H -0.257 1.257 16 H -0.297 1.297 17 H -0.245 1.245 18 N -0.567 5.567 19 C 0.326 3.674 20 N -0.589 5.589 21 H 0.105 0.895 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.155 0.845 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.269 0.731 31 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -10.767 -9.636 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.216 6.216 4 C 0.169 3.831 5 C -0.275 4.275 6 C 0.090 3.910 7 C 0.030 3.970 8 H 0.066 0.934 9 C -0.203 4.203 10 C -0.551 4.551 11 H 0.042 0.958 12 C -0.179 4.179 13 N -0.584 5.584 14 Si 0.779 3.221 15 H -0.182 1.182 16 H -0.225 1.225 17 H -0.169 1.169 18 N -0.286 5.286 19 C 0.039 3.961 20 N -0.321 5.321 21 H 0.124 0.876 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.172 0.828 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.679 -11.232 -9.533 17.099 hybrid contribution -0.039 1.111 0.224 1.134 sum -8.718 -10.121 -9.309 16.281 Atomic orbital electron populations 1.21847 0.90560 1.04532 1.03393 1.22954 0.96618 0.79526 1.02707 1.86235 1.15624 1.32930 1.86795 1.20134 0.84865 0.90018 0.88124 1.21854 0.96611 0.97265 1.11745 1.21733 0.89532 0.95326 0.84366 1.18224 0.96005 0.86890 0.95851 0.93361 1.22155 1.00631 0.98379 0.99112 1.20787 1.41021 1.02497 0.90758 0.95751 1.25839 0.94926 0.98723 0.98421 1.70030 1.46248 1.20531 1.21629 0.85774 0.77923 0.78851 0.79508 1.18229 1.22479 1.16875 1.68301 1.42039 0.99551 1.18669 1.25399 0.87668 0.95305 0.87739 1.68126 1.07050 1.33662 1.23238 0.87641 0.91856 0.91358 0.91048 0.91775 0.82783 0.91689 0.93720 0.91519 0.92156 0.75003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.06 1.28 6.06 71.98 0.44 1.72 16 3 O -0.31 -9.63 10.13 -88.16 -0.89 -10.53 16 4 C 0.35 12.62 7.53 84.83 0.64 13.26 16 5 C -0.25 -9.90 9.21 22.54 0.21 -9.69 16 6 C 0.23 10.07 5.75 42.44 0.24 10.31 16 7 C 0.05 2.34 2.24 -12.29 -0.03 2.32 16 8 H 0.05 2.32 7.20 -2.39 -0.02 2.30 16 9 C -0.15 -5.79 8.12 71.99 0.58 -5.21 16 10 C -0.51 -29.38 9.13 25.60 0.23 -29.15 16 11 H 0.02 1.58 7.98 -2.91 -0.02 1.56 16 12 C 0.02 1.08 5.45 84.66 0.46 1.54 16 13 N -0.95 -58.70 13.96 21.45 0.30 -58.40 16 14 Si 0.95 43.60 24.37 68.60 1.67 45.27 16 15 H -0.26 -10.87 6.87 99.48 0.68 -10.19 16 16 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.24 -10.38 6.53 99.48 0.65 -9.73 16 18 N -0.57 -23.21 10.37 -188.30 -1.95 -25.17 16 19 C 0.33 10.78 12.28 180.90 2.22 13.00 16 20 N -0.59 -19.63 9.39 -312.90 -2.94 -22.56 16 21 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 25 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 26 H 0.15 5.77 6.43 -2.91 -0.02 5.75 16 27 H 0.06 2.49 6.58 -2.39 -0.02 2.47 16 28 H 0.04 1.81 3.27 -2.39 -0.01 1.80 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.23 5.36 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -68.33 261.41 2.98 -65.36 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.05 Total: 9.52 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 5.74 Total: -3.49 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.59 Total: -106.13 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.89 Total: -10.53 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.27 kcal Total: -68.33 2.98 -65.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218506.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.573 kcal (2) G-P(sol) polarization free energy of solvation -68.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds