Wall clock time and date at job start Mon Mar 30 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46836 * 2 1 4 4 C 1.52994 * 109.47229 * 119.99628 * 2 1 3 5 5 O 1.42902 * 109.47256 * 174.99813 * 4 2 1 6 6 C 1.35447 * 117.00290 * 179.97438 * 5 4 2 7 7 N 1.32589 * 119.05022 * 0.02562 * 6 5 4 8 8 C 1.32367 * 121.23518 * 179.97438 * 7 6 5 9 9 C 1.38353 * 119.32361 * 0.02562 * 8 7 6 10 10 C 1.40888 * 118.27491 * 359.97438 * 9 8 7 11 11 C 1.41539 * 120.62886 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99985 * 6.34854 * 11 10 9 13 13 C 1.40105 * 120.00109 * 186.34180 * 11 10 9 14 14 N 1.30673 * 120.00184 * 176.28476 * 13 11 10 15 15 Si 1.86803 * 119.99826 * 356.00413 * 13 11 10 16 16 H 1.48500 * 109.46802 * 180.27802 * 15 13 11 17 17 H 1.48493 * 109.47287 * 300.27542 * 15 13 11 18 18 H 1.48496 * 109.46983 * 60.27978 * 15 13 11 19 19 N 1.31902 * 119.05205 * 180.25775 * 6 5 4 20 20 H 1.09004 * 109.47224 * 300.00400 * 1 2 3 21 21 H 1.08998 * 109.47566 * 59.99860 * 1 2 3 22 22 H 1.09003 * 109.47512 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47181 * 240.00293 * 2 1 3 24 24 H 1.09001 * 109.46899 * 299.99670 * 3 2 1 25 25 H 1.08997 * 109.46996 * 60.00180 * 3 2 1 26 26 H 1.09005 * 109.46696 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46842 * 55.00324 * 4 2 1 28 28 H 1.09001 * 109.47530 * 295.00564 * 4 2 1 29 29 H 1.07998 * 120.33845 * 180.02562 * 8 7 6 30 30 H 1.07998 * 120.86357 * 179.97438 * 9 8 7 31 31 H 0.97001 * 119.99849 * 354.98993 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 8 3.4641 -0.8237 1.1920 6 6 4.0785 -1.4401 2.2299 7 7 3.3419 -1.9089 3.2277 8 6 3.8971 -2.5190 4.2629 9 6 5.2718 -2.6691 4.3036 10 6 6.0306 -2.1617 3.2304 11 6 7.4404 -2.2875 3.2211 12 1 7.9362 -2.8642 3.9879 13 6 8.1927 -1.6640 2.2170 14 7 9.4979 -1.7191 2.2490 15 14 7.3298 -0.7605 0.8282 16 1 8.3425 -0.1984 -0.1011 17 1 6.4532 -1.7063 0.0918 18 1 6.5078 0.3412 1.3900 19 7 5.3927 -1.5526 2.2210 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6054 -1.7197 1.2951 28 1 1.7516 -0.1582 2.1370 29 1 3.2831 -2.8957 5.0676 30 1 5.7509 -3.1623 5.1364 31 1 9.9477 -2.1282 3.0048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:25 Heat of formation + Delta-G solvation = -26.575434 kcal Electronic energy + Delta-G solvation = -14971.297935 eV Core-core repulsion = 12445.084855 eV Total energy + Delta-G solvation = -2526.213079 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.72692 -37.76646 -35.03952 -34.12700 -32.14284 -30.18531 -27.09557 -26.56419 -26.00190 -22.79643 -21.46676 -20.06838 -18.74882 -17.35133 -16.38754 -15.77357 -14.76002 -14.46572 -14.17371 -13.86628 -13.53174 -13.10137 -12.61753 -12.38941 -12.29605 -12.10570 -12.03667 -11.21097 -11.01243 -10.92337 -10.61529 -10.45417 -10.25544 -9.82337 -9.41404 -9.21037 -9.14283 -7.90756 -7.70646 -7.25884 -5.12915 2.42573 2.54073 3.39727 3.69432 3.73671 4.06956 4.47479 4.61127 4.94252 4.97516 5.14377 5.29336 5.40874 5.60290 5.66315 5.69994 5.90013 5.92129 6.01356 6.07566 6.11053 6.23657 6.41070 6.44835 6.48640 6.86681 7.10291 7.27519 7.72000 7.85613 8.23822 8.37330 8.58513 9.54553 9.84360 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.009334 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.696471 B = 2999.027098 C = 3778.096265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.147 4.147 4 C 0.087 3.913 5 O -0.303 6.303 6 C 0.521 3.479 7 N -0.662 5.662 8 C 0.169 3.831 9 C -0.336 4.336 10 C 0.283 3.717 11 C -0.451 4.451 12 H 0.090 0.910 13 C 0.046 3.954 14 N -0.788 5.788 15 Si 1.153 2.847 16 H -0.331 1.331 17 H -0.283 1.283 18 H -0.284 1.284 19 N -0.607 5.607 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.115 0.885 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.608 2.483 -1.962 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.204 4.204 4 C 0.010 3.990 5 O -0.206 6.206 6 C 0.217 3.783 7 N -0.400 5.400 8 C 0.015 3.985 9 C -0.363 4.363 10 C 0.158 3.842 11 C -0.485 4.485 12 H 0.108 0.892 13 C -0.178 4.178 14 N -0.409 5.409 15 Si 0.987 3.013 16 H -0.264 1.264 17 H -0.211 1.211 18 H -0.212 1.212 19 N -0.346 5.346 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.640 3.781 -4.215 12.944 hybrid contribution 0.113 -1.552 2.621 3.049 sum -11.528 2.228 -1.594 11.849 Atomic orbital electron populations 1.21737 0.94100 1.01988 1.02045 1.21182 0.95532 0.97026 0.98007 1.21822 1.02351 0.95021 1.01213 1.22538 0.78096 1.00444 0.97872 1.85943 1.22063 1.72765 1.39824 1.20284 0.86163 0.87072 0.84825 1.67835 1.40280 1.25850 1.06058 1.22080 0.92325 0.90951 0.93164 1.22189 0.95211 1.15493 1.03435 1.18594 0.93837 0.85924 0.85895 1.20895 0.89861 1.26526 1.11251 0.89202 1.27940 0.94522 0.93572 1.01749 1.70639 1.09679 1.30552 1.30064 0.81803 0.70254 0.76949 0.72249 1.26402 1.21052 1.21207 1.66469 1.06745 1.30818 1.30569 0.92439 0.92097 0.92466 0.90275 0.92829 0.92854 0.91604 0.92061 0.91998 0.84440 0.86644 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.10 -1.33 3.16 -90.62 -0.29 -1.62 16 3 C -0.15 -1.93 9.09 37.16 0.34 -1.59 16 4 C 0.09 1.49 4.66 37.15 0.17 1.66 16 5 O -0.30 -6.78 9.73 -18.03 -0.18 -6.95 16 6 C 0.52 13.01 8.48 -91.38 -0.77 12.24 16 7 N -0.66 -15.26 9.20 -14.81 -0.14 -15.39 16 8 C 0.17 3.62 11.29 -17.28 -0.20 3.42 16 9 C -0.34 -7.84 9.94 -38.54 -0.38 -8.23 16 10 C 0.28 7.51 6.44 -84.64 -0.54 6.97 16 11 C -0.45 -12.16 9.63 -37.62 -0.36 -12.52 16 12 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 13 C 0.05 1.24 5.52 -17.34 -0.10 1.15 16 14 N -0.79 -21.08 13.65 55.55 0.76 -20.32 16 15 Si 1.15 29.51 25.48 -169.99 -4.33 25.17 16 16 H -0.33 -8.22 7.11 56.52 0.40 -7.81 16 17 H -0.28 -7.42 6.98 56.52 0.39 -7.03 16 18 H -0.28 -7.46 6.92 56.52 0.39 -7.06 16 19 N -0.61 -16.46 4.78 -12.67 -0.06 -16.52 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.01 7.82 -51.93 -0.41 0.61 16 27 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 28 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 29 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 31 H 0.29 7.20 8.72 -40.82 -0.36 6.84 16 LS Contribution 266.99 15.07 4.02 4.02 Total: -1.00 -29.58 266.99 -5.93 -35.51 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: -4.22 Total: -5.89 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.79 Total: 0.37 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.56 Total: -52.24 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.18 Total: -6.95 kcal Atomic # 14 Polarization: 29.51 SS G_CDS: -4.33 Total: 25.17 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.58 -5.93 -35.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.935 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds