Wall clock time and date at job start Mon Mar 30 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46836 * 2 1 4 4 C 1.52994 * 109.47229 * 119.99628 * 2 1 3 5 5 O 1.42902 * 109.47256 * 174.99813 * 4 2 1 6 6 C 1.35447 * 117.00290 * 179.97438 * 5 4 2 7 7 N 1.32589 * 119.05022 * 0.02562 * 6 5 4 8 8 C 1.32367 * 121.23518 * 179.97438 * 7 6 5 9 9 C 1.38353 * 119.32361 * 0.02562 * 8 7 6 10 10 C 1.40888 * 118.27491 * 359.97438 * 9 8 7 11 11 C 1.41539 * 120.62886 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99985 * 6.34854 * 11 10 9 13 13 C 1.40105 * 120.00109 * 186.34180 * 11 10 9 14 14 N 1.30673 * 120.00184 * 176.28476 * 13 11 10 15 15 Si 1.86803 * 119.99826 * 356.00413 * 13 11 10 16 16 H 1.48500 * 109.46802 * 180.27802 * 15 13 11 17 17 H 1.48493 * 109.47287 * 300.27542 * 15 13 11 18 18 H 1.48496 * 109.46983 * 60.27978 * 15 13 11 19 19 N 1.31902 * 119.05205 * 180.25775 * 6 5 4 20 20 H 1.09004 * 109.47224 * 300.00400 * 1 2 3 21 21 H 1.08998 * 109.47566 * 59.99860 * 1 2 3 22 22 H 1.09003 * 109.47512 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47181 * 240.00293 * 2 1 3 24 24 H 1.09001 * 109.46899 * 299.99670 * 3 2 1 25 25 H 1.08997 * 109.46996 * 60.00180 * 3 2 1 26 26 H 1.09005 * 109.46696 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46842 * 55.00324 * 4 2 1 28 28 H 1.09001 * 109.47530 * 295.00564 * 4 2 1 29 29 H 1.07998 * 120.33845 * 180.02562 * 8 7 6 30 30 H 1.07998 * 120.86357 * 179.97438 * 9 8 7 31 31 H 0.97001 * 119.99849 * 354.98993 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 8 3.4641 -0.8237 1.1920 6 6 4.0785 -1.4401 2.2299 7 7 3.3419 -1.9089 3.2277 8 6 3.8971 -2.5190 4.2629 9 6 5.2718 -2.6691 4.3036 10 6 6.0306 -2.1617 3.2304 11 6 7.4404 -2.2875 3.2211 12 1 7.9362 -2.8642 3.9879 13 6 8.1927 -1.6640 2.2170 14 7 9.4979 -1.7191 2.2490 15 14 7.3298 -0.7605 0.8282 16 1 8.3425 -0.1984 -0.1011 17 1 6.4532 -1.7063 0.0918 18 1 6.5078 0.3412 1.3900 19 7 5.3927 -1.5526 2.2210 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6054 -1.7197 1.2951 28 1 1.7516 -0.1582 2.1370 29 1 3.2831 -2.8957 5.0676 30 1 5.7509 -3.1623 5.1364 31 1 9.9477 -2.1282 3.0048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218812.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:25 Heat of formation + Delta-G solvation = -46.015398 kcal Electronic energy + Delta-G solvation = -14972.140915 eV Core-core repulsion = 12445.084855 eV Total energy + Delta-G solvation = -2527.056060 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.56323 -39.40655 -36.39709 -35.96572 -34.09275 -32.03855 -28.41712 -28.03029 -27.44497 -24.65033 -23.29855 -21.29417 -20.67036 -19.14407 -18.17564 -17.34339 -16.54844 -16.11026 -15.71722 -15.45078 -15.24191 -14.55399 -14.44272 -13.98116 -13.89939 -13.51270 -13.07431 -12.95706 -12.51619 -12.27664 -12.05209 -11.86182 -11.69204 -11.60351 -11.44753 -11.16966 -11.08511 -9.77994 -9.71713 -9.24317 -7.14339 0.55813 0.59452 1.53940 1.67859 1.78920 2.06590 2.45870 2.59347 3.44435 3.55217 3.80876 3.89608 4.09221 4.27838 4.39425 4.51289 4.59378 4.71505 4.72487 4.81771 4.96519 5.00412 5.01207 5.17829 5.24767 5.31629 5.38953 5.42611 5.77928 5.90574 6.35546 6.39206 6.70968 7.62738 7.82136 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.009334 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.696471 B = 2999.027098 C = 3778.096265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.081 3.919 5 O -0.319 6.319 6 C 0.507 3.493 7 N -0.650 5.650 8 C 0.178 3.822 9 C -0.346 4.346 10 C 0.267 3.733 11 C -0.479 4.479 12 H 0.089 0.911 13 C 0.027 3.973 14 N -0.805 5.805 15 Si 1.184 2.816 16 H -0.322 1.322 17 H -0.298 1.298 18 H -0.299 1.299 19 N -0.637 5.637 20 H 0.063 0.937 21 H 0.081 0.919 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.191 0.809 30 H 0.138 0.862 31 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.912 2.530 -1.645 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 C -0.203 4.203 4 C 0.006 3.994 5 O -0.222 6.222 6 C 0.203 3.797 7 N -0.388 5.388 8 C 0.024 3.976 9 C -0.371 4.371 10 C 0.141 3.859 11 C -0.514 4.514 12 H 0.107 0.893 13 C -0.194 4.194 14 N -0.427 5.427 15 Si 1.020 2.980 16 H -0.255 1.255 17 H -0.227 1.227 18 H -0.228 1.228 19 N -0.377 5.377 20 H 0.082 0.918 21 H 0.100 0.900 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.208 0.792 30 H 0.156 0.844 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.950 3.834 -3.908 14.986 hybrid contribution 0.618 -1.575 2.566 3.073 sum -13.332 2.259 -1.342 13.588 Atomic orbital electron populations 1.21710 0.91128 1.02872 1.03415 1.21262 0.97747 0.96517 0.95915 1.21820 1.00376 0.95309 1.02815 1.22942 0.75396 1.01147 0.99938 1.85958 1.24856 1.72189 1.39190 1.20591 0.86011 0.87331 0.85816 1.68007 1.39842 1.25083 1.05880 1.22895 0.92300 0.89014 0.93421 1.22448 0.96063 1.15461 1.03160 1.18904 0.94148 0.86039 0.86824 1.20929 0.90475 1.28009 1.11937 0.89269 1.28240 0.94849 0.93923 1.02434 1.70615 1.09645 1.31720 1.30706 0.81312 0.69445 0.75707 0.71531 1.25505 1.22674 1.22848 1.66342 1.08261 1.31669 1.31455 0.91775 0.90033 0.91869 0.90650 0.90254 0.92284 0.94652 0.91833 0.91916 0.79219 0.84443 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.10 -2.40 3.16 -10.79 -0.03 -2.43 16 3 C -0.15 -3.61 9.09 71.99 0.65 -2.96 16 4 C 0.08 2.67 4.66 71.98 0.34 3.00 16 5 O -0.32 -14.17 9.73 -87.44 -0.85 -15.02 16 6 C 0.51 24.96 8.48 180.61 1.53 26.49 16 7 N -0.65 -28.49 9.20 -313.60 -2.88 -31.38 16 8 C 0.18 7.05 11.29 84.64 0.96 8.00 16 9 C -0.35 -15.41 9.94 22.95 0.23 -15.19 16 10 C 0.27 14.13 6.44 40.27 0.26 14.39 16 11 C -0.48 -26.08 9.63 23.54 0.23 -25.85 16 12 H 0.09 4.72 8.06 -2.91 -0.02 4.70 16 13 C 0.03 1.48 5.52 85.32 0.47 1.95 16 14 N -0.80 -43.44 13.65 21.85 0.30 -43.14 16 15 Si 1.18 61.32 25.48 68.60 1.75 63.07 16 16 H -0.32 -15.90 7.11 99.48 0.71 -15.19 16 17 H -0.30 -15.95 6.98 99.48 0.69 -15.26 16 18 H -0.30 -16.05 6.92 99.48 0.69 -15.36 16 19 N -0.64 -34.64 4.78 -307.17 -1.47 -36.11 16 20 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.03 1.07 7.82 -2.38 -0.02 1.06 16 27 H 0.06 2.03 8.09 -2.39 -0.02 2.01 16 28 H 0.06 2.03 8.09 -2.39 -0.02 2.01 16 29 H 0.19 5.49 8.06 -2.91 -0.02 5.46 16 30 H 0.14 5.43 8.06 -2.91 -0.02 5.41 16 31 H 0.29 14.79 8.72 -92.71 -0.81 13.99 16 Total: -1.00 -63.24 266.99 3.17 -60.08 By element: Atomic # 1 Polarization: -4.26 SS G_CDS: 1.04 Total: -3.22 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.29 Total: 5.73 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.06 Total: -110.63 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.85 Total: -15.02 kcal Atomic # 14 Polarization: 61.32 SS G_CDS: 1.75 Total: 63.07 kcal Total: -63.24 3.17 -60.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218812.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.060 kcal (2) G-P(sol) polarization free energy of solvation -63.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds