Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47066 * 2 1 4 4 C 1.52994 * 109.47295 * 120.00398 * 2 1 3 5 5 O 1.42898 * 109.47160 * 174.99842 * 4 2 1 6 6 C 1.35546 * 116.99981 * 179.97438 * 5 4 2 7 7 C 1.39205 * 120.44301 * 179.97438 * 6 5 4 8 8 C 1.40593 * 118.08859 * 180.02562 * 7 6 5 9 9 C 1.41602 * 120.62922 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99845 * 6.94933 * 9 8 7 11 11 C 1.40084 * 120.00015 * 186.94468 * 9 8 7 12 12 N 1.30683 * 120.00185 * 182.40349 * 11 9 8 13 13 Si 1.86799 * 119.99930 * 2.40552 * 11 9 8 14 14 H 1.48496 * 109.47382 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47248 * 300.00162 * 13 11 9 16 16 H 1.48506 * 109.47109 * 60.00025 * 13 11 9 17 17 N 1.34194 * 118.74108 * 0.25864 * 8 7 6 18 18 C 1.31346 * 120.72573 * 359.48035 * 17 8 7 19 19 N 1.32030 * 122.13253 * 0.53518 * 18 17 8 20 20 H 1.08997 * 109.46544 * 299.99836 * 1 2 3 21 21 H 1.08998 * 109.46941 * 59.99647 * 1 2 3 22 22 H 1.09000 * 109.46978 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46775 * 240.00551 * 2 1 3 24 24 H 1.09010 * 109.47066 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47529 * 299.99993 * 3 2 1 26 26 H 1.08997 * 109.47305 * 60.00630 * 3 2 1 27 27 H 1.09008 * 109.47052 * 54.99778 * 4 2 1 28 28 H 1.09000 * 109.46906 * 294.99941 * 4 2 1 29 29 H 1.07996 * 120.95692 * 0.05084 * 7 6 5 30 30 H 0.97007 * 119.99943 * 354.82861 * 12 11 9 31 31 H 1.08003 * 118.93371 * 180.24531 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 3.4642 -0.8239 1.1918 6 6 4.0790 -1.4408 2.2304 7 6 5.4639 -1.5807 2.2481 8 6 6.0497 -2.2293 3.3493 9 6 7.4534 -2.4013 3.4223 10 1 8.0933 -1.9367 2.6868 11 6 8.0119 -3.1742 4.4485 12 7 9.3097 -3.2945 4.5436 13 14 6.9015 -4.0328 5.6811 14 1 7.7322 -4.7812 6.6583 15 1 6.0830 -3.0222 6.3979 16 1 6.0066 -4.9782 4.9665 17 7 5.2530 -2.6874 4.3272 18 6 3.9512 -2.5247 4.2636 19 7 3.3679 -1.9207 3.2448 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.6054 -1.7199 1.2950 28 1 1.7517 -0.1584 2.1369 29 1 6.0709 -1.2015 1.4393 30 1 9.8835 -2.9117 3.8615 31 1 3.3377 -2.9014 5.0687 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231522.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = -33.853650 kcal Electronic energy + Delta-G solvation = -14705.884922 eV Core-core repulsion = 12179.356236 eV Total energy + Delta-G solvation = -2526.528687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.71608 -37.91546 -35.18959 -34.09810 -31.71564 -30.39628 -27.18107 -26.92217 -25.57051 -22.97299 -21.47613 -20.12261 -18.82686 -17.43431 -16.14678 -15.72896 -14.85659 -14.48684 -14.14230 -14.12123 -13.36175 -13.17035 -12.83259 -12.61650 -12.34839 -12.20231 -12.11055 -11.41723 -11.08974 -10.90469 -10.66427 -10.44365 -10.33324 -9.84785 -9.49113 -9.11910 -8.88831 -8.00630 -7.76859 -7.36339 -5.10147 2.37336 2.56383 3.55617 3.65002 3.66801 3.96420 4.36651 4.58610 4.87283 4.90665 5.08998 5.25354 5.41208 5.53565 5.58686 5.62203 5.67867 5.81860 5.89787 5.98157 6.03411 6.26064 6.33391 6.44209 6.72685 6.83618 6.95600 7.28338 7.75113 7.92710 8.21734 8.40393 8.53840 9.51038 9.83954 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.060693 B = 0.006460 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.229013 B = 4333.255032 C = 4703.512613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.145 4.145 4 C 0.080 3.920 5 O -0.313 6.313 6 C 0.354 3.646 7 C -0.334 4.334 8 C 0.277 3.723 9 C -0.454 4.454 10 H 0.086 0.914 11 C 0.044 3.956 12 N -0.791 5.791 13 Si 1.154 2.846 14 H -0.329 1.329 15 H -0.276 1.276 16 H -0.291 1.291 17 N -0.614 5.614 18 C 0.350 3.650 19 N -0.665 5.665 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.286 0.714 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 4.166 -5.065 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.202 4.202 4 C 0.004 3.996 5 O -0.221 6.221 6 C 0.178 3.822 7 C -0.360 4.360 8 C 0.153 3.847 9 C -0.487 4.487 10 H 0.104 0.896 11 C -0.179 4.179 12 N -0.412 5.412 13 Si 0.988 3.012 14 H -0.262 1.262 15 H -0.203 1.203 16 H -0.219 1.219 17 N -0.344 5.344 18 C 0.059 3.941 19 N -0.403 5.403 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.097 0.903 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.753 3.143 -3.411 12.635 hybrid contribution 0.450 1.366 -2.196 2.625 sum -11.303 4.508 -5.607 13.399 Atomic orbital electron populations 1.21748 0.94202 1.02028 1.02029 1.21168 0.95588 0.96891 0.98037 1.21803 1.02044 0.95170 1.01228 1.22497 0.79221 1.00263 0.97630 1.86128 1.21848 1.73174 1.40935 1.19710 0.89197 0.87953 0.85390 1.21304 0.91286 1.18667 1.04735 1.18596 0.93678 0.86465 0.85981 1.20864 0.90367 1.25850 1.11610 0.89562 1.27945 0.97328 0.93344 0.99275 1.70630 1.04777 1.33652 1.32107 0.81862 0.70576 0.75342 0.73434 1.26213 1.20321 1.21901 1.67314 1.05874 1.30958 1.30207 1.23794 0.88776 0.88926 0.92558 1.67856 1.40817 1.25666 1.06001 0.92413 0.92170 0.92443 0.90524 0.91864 0.92914 0.92838 0.92261 0.92189 0.86570 0.90281 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 2 C -0.10 -1.24 3.16 -90.62 -0.29 -1.52 16 3 C -0.15 -1.75 9.09 37.16 0.34 -1.41 16 4 C 0.08 1.29 4.72 37.15 0.18 1.47 16 5 O -0.31 -6.35 9.67 -18.33 -0.18 -6.53 16 6 C 0.35 8.20 7.53 -16.75 -0.13 8.08 16 7 C -0.33 -8.28 9.91 -38.33 -0.38 -8.66 16 8 C 0.28 7.30 6.41 -84.66 -0.54 6.75 16 9 C -0.45 -12.22 9.63 -37.61 -0.36 -12.58 16 10 H 0.09 2.31 8.05 -52.49 -0.42 1.89 16 11 C 0.04 1.17 5.52 -17.35 -0.10 1.08 16 12 N -0.79 -20.94 13.65 55.55 0.76 -20.18 16 13 Si 1.15 27.57 25.57 -169.99 -4.35 23.22 16 14 H -0.33 -7.73 7.11 56.52 0.40 -7.33 16 15 H -0.28 -6.52 6.70 56.52 0.38 -6.14 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 N -0.61 -15.53 4.77 -12.57 -0.06 -15.59 16 18 C 0.35 7.87 12.27 -92.33 -1.13 6.74 16 19 N -0.66 -15.00 9.36 -14.71 -0.14 -15.14 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.87 7.82 -51.92 -0.41 0.46 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.97 8.12 -51.92 -0.42 0.55 16 28 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.12 2.76 8.06 -52.49 -0.42 2.33 16 30 H 0.29 7.21 8.72 -40.82 -0.36 6.85 16 31 H 0.17 3.11 8.06 -52.48 -0.42 2.68 16 LS Contribution 267.14 15.07 4.03 4.03 Total: -1.00 -28.61 267.14 -6.24 -34.85 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.23 Total: -3.52 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.07 Total: -1.13 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.56 Total: -50.92 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.18 Total: -6.53 kcal Atomic # 14 Polarization: 27.57 SS G_CDS: -4.35 Total: 23.22 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.61 -6.24 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231522.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.995 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds