Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47066 * 2 1 4 4 C 1.52994 * 109.47295 * 120.00398 * 2 1 3 5 5 O 1.42898 * 109.47160 * 174.99842 * 4 2 1 6 6 C 1.35546 * 116.99981 * 179.97438 * 5 4 2 7 7 C 1.39205 * 120.44301 * 179.97438 * 6 5 4 8 8 C 1.40593 * 118.08859 * 180.02562 * 7 6 5 9 9 C 1.41602 * 120.62922 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99845 * 6.94933 * 9 8 7 11 11 C 1.40084 * 120.00015 * 186.94468 * 9 8 7 12 12 N 1.30683 * 120.00185 * 182.40349 * 11 9 8 13 13 Si 1.86799 * 119.99930 * 2.40552 * 11 9 8 14 14 H 1.48496 * 109.47382 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47248 * 300.00162 * 13 11 9 16 16 H 1.48506 * 109.47109 * 60.00025 * 13 11 9 17 17 N 1.34194 * 118.74108 * 0.25864 * 8 7 6 18 18 C 1.31346 * 120.72573 * 359.48035 * 17 8 7 19 19 N 1.32030 * 122.13253 * 0.53518 * 18 17 8 20 20 H 1.08997 * 109.46544 * 299.99836 * 1 2 3 21 21 H 1.08998 * 109.46941 * 59.99647 * 1 2 3 22 22 H 1.09000 * 109.46978 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46775 * 240.00551 * 2 1 3 24 24 H 1.09010 * 109.47066 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47529 * 299.99993 * 3 2 1 26 26 H 1.08997 * 109.47305 * 60.00630 * 3 2 1 27 27 H 1.09008 * 109.47052 * 54.99778 * 4 2 1 28 28 H 1.09000 * 109.46906 * 294.99941 * 4 2 1 29 29 H 1.07996 * 120.95692 * 0.05084 * 7 6 5 30 30 H 0.97007 * 119.99943 * 354.82861 * 12 11 9 31 31 H 1.08003 * 118.93371 * 180.24531 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 3.4642 -0.8239 1.1918 6 6 4.0790 -1.4408 2.2304 7 6 5.4639 -1.5807 2.2481 8 6 6.0497 -2.2293 3.3493 9 6 7.4534 -2.4013 3.4223 10 1 8.0933 -1.9367 2.6868 11 6 8.0119 -3.1742 4.4485 12 7 9.3097 -3.2945 4.5436 13 14 6.9015 -4.0328 5.6811 14 1 7.7322 -4.7812 6.6583 15 1 6.0830 -3.0222 6.3979 16 1 6.0066 -4.9782 4.9665 17 7 5.2530 -2.6874 4.3272 18 6 3.9512 -2.5247 4.2636 19 7 3.3679 -1.9207 3.2448 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.6054 -1.7199 1.2950 28 1 1.7517 -0.1584 2.1369 29 1 6.0709 -1.2015 1.4393 30 1 9.8835 -2.9117 3.8615 31 1 3.3377 -2.9014 5.0687 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231522.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = -50.983680 kcal Electronic energy + Delta-G solvation = -14706.627736 eV Core-core repulsion = 12179.356236 eV Total energy + Delta-G solvation = -2527.271500 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.52587 -39.52980 -36.44549 -35.96549 -33.62867 -32.23689 -28.65265 -28.05973 -27.09186 -24.81083 -23.30205 -21.23542 -20.76420 -19.16187 -17.90922 -17.20478 -16.68276 -16.03393 -15.86688 -15.42654 -15.04944 -14.73109 -14.55769 -14.11345 -14.02738 -13.55339 -13.07288 -12.92945 -12.38524 -12.30808 -12.05892 -11.85851 -11.70963 -11.61409 -11.41904 -10.98930 -10.79981 -9.86217 -9.72354 -9.33669 -7.14086 0.49248 0.62227 1.64178 1.75517 2.06611 2.11967 2.47876 2.63315 3.45694 3.52109 3.79126 3.82836 3.89162 4.13953 4.46569 4.53348 4.57457 4.71706 4.76266 4.84661 4.90419 4.95173 4.98907 5.15443 5.17451 5.24635 5.36318 5.39707 5.76184 5.97538 6.40752 6.42687 6.63016 7.61313 7.82415 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.060693 B = 0.006460 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.229013 B = 4333.255032 C = 4703.512613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.074 3.926 5 O -0.317 6.317 6 C 0.361 3.639 7 C -0.358 4.358 8 C 0.270 3.730 9 C -0.483 4.483 10 H 0.072 0.928 11 C 0.020 3.980 12 N -0.808 5.808 13 Si 1.186 2.814 14 H -0.324 1.324 15 H -0.270 1.270 16 H -0.292 1.292 17 N -0.631 5.631 18 C 0.349 3.651 19 N -0.655 5.655 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.285 0.715 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.015 4.409 -5.116 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.001 4.001 5 O -0.224 6.224 6 C 0.183 3.817 7 C -0.384 4.384 8 C 0.145 3.855 9 C -0.517 4.517 10 H 0.090 0.910 11 C -0.199 4.199 12 N -0.430 5.430 13 Si 1.016 2.984 14 H -0.257 1.257 15 H -0.197 1.197 16 H -0.220 1.220 17 N -0.361 5.361 18 C 0.059 3.941 19 N -0.393 5.393 20 H 0.080 0.920 21 H 0.099 0.901 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.097 0.903 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -14.289 3.404 -3.483 15.096 hybrid contribution 1.060 1.369 -2.281 2.864 sum -13.228 4.773 -5.764 15.198 Atomic orbital electron populations 1.21731 0.91668 1.02761 1.03291 1.21221 0.97481 0.96581 0.95968 1.21804 1.00573 0.95175 1.02621 1.22871 0.76720 1.00826 0.99694 1.86146 1.24353 1.72190 1.39699 1.19821 0.89005 0.87044 0.85856 1.21379 0.92485 1.19712 1.04796 1.18713 0.93727 0.86389 0.86646 1.20881 0.90988 1.27492 1.12343 0.90997 1.28710 0.97804 0.93354 1.00036 1.70644 1.05019 1.34717 1.32583 0.81478 0.69707 0.74818 0.72407 1.25703 1.19709 1.21961 1.67366 1.07025 1.31576 1.30089 1.24712 0.88390 0.87696 0.93288 1.68015 1.40441 1.25077 1.05774 0.91952 0.90139 0.92022 0.90588 0.94140 0.90513 0.92529 0.92289 0.92306 0.86640 0.90346 0.76790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.19 71.98 0.66 -1.59 16 2 C -0.09 -2.13 3.16 -10.80 -0.03 -2.17 16 3 C -0.14 -3.16 9.09 71.98 0.65 -2.51 16 4 C 0.07 2.25 4.72 71.98 0.34 2.59 16 5 O -0.32 -12.46 9.67 -88.51 -0.86 -13.32 16 6 C 0.36 16.32 7.53 84.77 0.64 16.95 16 7 C -0.36 -17.80 9.91 23.08 0.23 -17.57 16 8 C 0.27 14.25 6.41 40.19 0.26 14.51 16 9 C -0.48 -26.62 9.63 23.55 0.23 -26.40 16 10 H 0.07 4.02 8.05 -2.91 -0.02 4.00 16 11 C 0.02 1.09 5.52 85.31 0.47 1.56 16 12 N -0.81 -43.35 13.65 21.84 0.30 -43.05 16 13 Si 1.19 55.03 25.57 68.60 1.75 56.78 16 14 H -0.32 -14.64 7.11 99.48 0.71 -13.93 16 15 H -0.27 -12.19 6.70 99.48 0.67 -11.52 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 17 N -0.63 -30.97 4.77 -193.67 -0.92 -31.89 16 18 C 0.35 14.74 12.27 180.95 2.22 16.96 16 19 N -0.65 -28.07 9.36 -313.09 -2.93 -31.00 16 20 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.06 7.82 -2.38 -0.02 1.04 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.80 8.12 -2.38 -0.02 1.78 16 28 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 29 H 0.12 5.61 8.06 -2.91 -0.02 5.58 16 30 H 0.29 14.78 8.72 -92.70 -0.81 13.97 16 31 H 0.22 6.93 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -60.19 267.14 4.03 -56.15 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.03 Total: 3.98 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.66 Total: 2.35 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.56 Total: -105.94 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.86 Total: -13.32 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 1.75 Total: 56.78 kcal Total: -60.19 4.03 -56.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231522.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.170 kcal (2) G-P(sol) polarization free energy of solvation -60.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds