Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.53008 * 109.47138 * 119.99391 * 2 1 3 5 5 O 1.42908 * 109.46718 * 65.00002 * 4 2 1 6 6 C 1.35274 * 116.99420 * 179.97438 * 5 4 2 7 7 N 1.32561 * 120.68794 * 0.31186 * 6 5 4 8 8 C 1.31871 * 120.98871 * 180.30754 * 7 6 5 9 9 N 1.32043 * 122.45869 * 359.65807 * 8 7 6 10 10 C 1.32022 * 121.25223 * 0.02562 * 9 8 7 11 11 C 1.40920 * 118.83260 * 359.97438 * 10 9 8 12 12 C 1.41169 * 121.08289 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00071 * 204.04781 * 12 11 10 14 14 C 1.39961 * 119.99867 * 24.04357 * 12 11 10 15 15 N 1.30846 * 120.00356 * 16.83979 * 14 12 11 16 16 Si 1.86808 * 119.99663 * 196.84285 * 14 12 11 17 17 H 1.48500 * 109.47097 * 265.18512 * 16 14 12 18 18 H 1.48503 * 109.47223 * 25.18914 * 16 14 12 19 19 H 1.48503 * 109.46785 * 145.18755 * 16 14 12 20 20 H 1.08998 * 109.46937 * 300.00191 * 1 2 3 21 21 H 1.08997 * 109.46971 * 60.00731 * 1 2 3 22 22 H 1.09007 * 109.46927 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47656 * 239.99217 * 2 1 3 24 24 H 1.09000 * 109.47521 * 179.97438 * 3 2 1 25 25 H 1.09006 * 109.46867 * 299.99479 * 3 2 1 26 26 H 1.08998 * 109.46991 * 59.99352 * 3 2 1 27 27 H 1.08994 * 109.47025 * 305.00479 * 4 2 1 28 28 H 1.08998 * 109.47474 * 184.99994 * 4 2 1 29 29 H 1.07995 * 118.77340 * 179.67446 * 8 7 6 30 30 H 1.07998 * 120.58356 * 180.02562 * 10 9 8 31 31 H 0.96999 * 120.00365 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 8 1.6619 -2.0981 1.1922 6 6 2.0388 -2.8819 2.2283 7 7 2.7223 -2.3763 3.2454 8 6 3.0979 -3.1361 4.2557 9 7 2.8146 -4.4243 4.3171 10 6 2.1330 -5.0223 3.3575 11 6 1.7048 -4.2605 2.2520 12 6 0.9726 -4.8513 1.1995 13 1 0.9820 -4.4029 0.2170 14 6 0.2346 -6.0181 1.4292 15 7 -0.0526 -6.3803 2.6533 16 14 -0.3401 -7.0585 -0.0120 17 1 -1.7264 -6.6730 -0.3791 18 1 0.5593 -6.8366 -1.1726 19 1 -0.3101 -8.4932 0.3703 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6766 1.9563 0.8899 27 1 1.6054 -0.2616 2.1370 28 1 3.1263 -0.6443 1.2953 29 1 3.6579 -2.6880 5.0630 30 1 1.9069 -6.0766 3.4190 31 1 -0.5644 -7.1887 2.8124 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239453.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = -22.374247 kcal Electronic energy + Delta-G solvation = -14968.123504 eV Core-core repulsion = 12442.092602 eV Total energy + Delta-G solvation = -2526.030902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37032 -37.47167 -34.82729 -34.25021 -31.34468 -30.27296 -26.96592 -26.14291 -25.69439 -22.26418 -21.89439 -19.89372 -17.57522 -17.38386 -16.38421 -15.49740 -14.98802 -14.22833 -13.93530 -13.69202 -13.49254 -12.86741 -12.44422 -12.26850 -12.06971 -11.95030 -11.67066 -11.31067 -11.03117 -10.98674 -10.80761 -10.65530 -10.35019 -10.17550 -9.54888 -9.22342 -8.73436 -7.93204 -7.61885 -6.97523 -4.48934 2.51452 2.82649 2.99971 3.03342 3.10110 3.80856 4.06049 4.54347 5.09796 5.13803 5.35103 5.57398 5.61493 5.73239 5.83449 5.84318 5.96824 6.02515 6.13826 6.20395 6.25950 6.47486 6.58306 6.64359 6.93545 6.96107 7.19871 7.73582 8.10144 8.23521 8.50588 8.53214 8.90436 9.78548 9.96973 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022976 B = 0.009878 C = 0.007205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.359222 B = 2833.807070 C = 3885.080541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.142 4.142 4 C 0.080 3.920 5 O -0.298 6.298 6 C 0.234 3.766 7 N -0.556 5.556 8 C 0.160 3.840 9 N -0.519 5.519 10 C 0.070 3.930 11 C 0.017 3.983 12 C -0.421 4.421 13 H 0.089 0.911 14 C 0.070 3.930 15 N -0.787 5.787 16 Si 0.918 3.082 17 H -0.268 1.268 18 H -0.258 1.258 19 H -0.273 1.273 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 6.267 -5.139 8.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.199 4.199 4 C 0.003 3.997 5 O -0.205 6.205 6 C 0.043 3.957 7 N -0.285 5.285 8 C -0.123 4.123 9 N -0.235 5.235 10 C -0.097 4.097 11 C 0.010 3.990 12 C -0.451 4.451 13 H 0.108 0.892 14 C -0.149 4.149 15 N -0.412 5.412 16 Si 0.741 3.259 17 H -0.193 1.193 18 H -0.181 1.181 19 H -0.197 1.197 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.176 0.824 30 H 0.180 0.820 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.286 6.476 -4.478 7.879 hybrid contribution -0.696 -0.627 -1.000 1.371 sum -0.411 5.849 -5.479 8.025 Atomic orbital electron populations 1.21793 0.94701 1.02836 1.00849 1.21134 0.96760 0.95436 0.98207 1.21748 1.00983 0.95386 1.01818 1.22395 0.98958 0.81101 0.97234 1.86071 1.74082 1.19743 1.40558 1.20221 0.98985 0.88645 0.87801 1.67358 1.15697 1.41818 1.03597 1.23243 1.05155 0.87425 0.96448 1.67756 1.14303 1.12041 1.29406 1.23164 0.96342 0.99892 0.90338 1.18499 0.95519 0.88325 0.96649 1.19435 1.22498 1.06036 0.97110 0.89245 1.26042 0.94325 0.97345 0.97178 1.69748 1.27944 1.21991 1.21541 0.86130 0.79691 0.78741 0.81329 1.19308 1.18132 1.19750 0.93045 0.93186 0.91422 0.90564 0.92624 0.92335 0.92572 0.92837 0.93011 0.82353 0.81952 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.09 37.16 0.34 -1.75 16 2 C -0.10 -1.44 3.16 -90.61 -0.29 -1.72 16 3 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 4 C 0.08 1.49 4.72 37.16 0.18 1.66 16 5 O -0.30 -6.95 9.07 -17.52 -0.16 -7.11 16 6 C 0.23 6.05 7.57 -15.85 -0.12 5.93 16 7 N -0.56 -13.86 9.37 -14.02 -0.13 -13.99 16 8 C 0.16 3.90 12.26 -91.87 -1.13 2.78 16 9 N -0.52 -13.46 10.41 -13.98 -0.15 -13.61 16 10 C 0.07 1.88 9.99 -16.46 -0.16 1.71 16 11 C 0.02 0.47 5.61 -106.38 -0.60 -0.13 16 12 C -0.42 -10.93 8.80 -37.82 -0.33 -11.27 16 13 H 0.09 2.27 7.71 -52.48 -0.40 1.87 16 14 C 0.07 1.69 5.20 -17.33 -0.09 1.60 16 15 N -0.79 -19.55 10.94 55.55 0.61 -18.94 16 16 Si 0.92 17.90 29.59 -169.99 -5.03 12.87 16 17 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.13 7.82 -51.92 -0.41 0.72 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 28 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 29 H 0.16 3.29 8.06 -52.49 -0.42 2.87 16 30 H 0.16 4.34 6.21 -52.49 -0.33 4.01 16 31 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -28.17 269.49 -6.73 -34.90 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.07 Total: 4.31 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.86 Total: -2.50 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.33 Total: -46.54 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.16 Total: -7.11 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.17 -6.73 -34.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239453.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.530 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds