Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35680 * 117.00283 * 2 1 4 4 C 1.38909 * 119.68817 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11302 * 179.77237 * 4 3 2 6 6 C 1.38829 * 118.48589 * 0.44280 * 5 4 3 7 7 C 1.50696 * 120.35917 * 179.80778 * 6 5 4 8 8 H 1.09000 * 109.46892 * 359.72282 * 7 6 5 9 9 C 1.50696 * 109.47063 * 239.72575 * 7 6 5 10 10 H 1.08008 * 120.00200 * 266.05504 * 9 7 6 11 11 C 1.37877 * 120.00355 * 86.05707 * 9 7 6 12 12 N 1.31519 * 119.99693 * 357.21760 * 11 9 7 13 13 Si 1.86799 * 120.00287 * 177.21388 * 11 9 7 14 14 H 1.48501 * 109.47274 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.47186 * 60.00019 * 13 11 9 16 16 H 1.48498 * 109.47164 * 300.00002 * 13 11 9 17 17 C 1.52998 * 109.47323 * 119.72211 * 7 6 5 18 18 N 1.46899 * 109.47366 * 185.27562 * 17 7 6 19 19 C 1.38047 * 119.28679 * 359.53375 * 6 5 4 20 20 N 1.31967 * 120.83526 * 0.25247 * 19 6 5 21 21 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47215 * 300.00071 * 1 2 3 23 23 H 1.08996 * 109.47418 * 60.00054 * 1 2 3 24 24 H 1.07997 * 120.44589 * 359.97438 * 4 3 2 25 25 H 1.08000 * 120.75907 * 180.25828 * 5 4 3 26 26 H 0.97001 * 119.99984 * 354.49313 * 12 11 9 27 27 H 1.08994 * 109.47136 * 305.27743 * 17 7 6 28 28 H 1.09008 * 109.46874 * 65.27769 * 17 7 6 29 29 H 1.00901 * 110.99785 * 62.74070 * 18 17 7 30 30 H 1.00901 * 111.00493 * 186.69964 * 18 17 7 31 31 H 1.08001 * 119.58597 * 180.27428 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5131 -0.0053 6 6 3.2505 3.6492 0.0000 7 6 3.8767 5.0198 -0.0006 8 1 4.9624 4.9232 -0.0005 9 6 3.4394 5.7724 1.2296 10 1 2.5825 6.4285 1.1852 11 6 4.1330 5.6235 2.4119 12 7 5.1425 4.7834 2.4806 13 14 3.6389 6.6151 3.9159 14 1 4.5355 6.2746 5.0497 15 1 2.2354 6.2950 4.2807 16 1 3.7534 8.0643 3.6129 17 6 3.4327 5.7829 -1.2501 18 7 4.1403 7.0686 -1.3160 19 6 1.8771 3.5097 0.0000 20 7 1.3186 2.3140 0.0001 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 4.0228 0.3696 -0.0005 25 1 5.1253 2.5947 -0.0101 26 1 5.3492 4.2107 1.7255 27 1 3.6656 5.1942 -2.1373 28 1 2.3583 5.9615 -1.2042 29 1 5.1357 6.9293 -1.4043 30 1 3.7865 7.6379 -2.0702 31 1 1.2517 4.3902 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266876.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -34.129114 kcal Electronic energy + Delta-G solvation = -15049.139460 eV Core-core repulsion = 12522.598829 eV Total energy + Delta-G solvation = -2526.540632 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.52962 -39.14072 -36.96346 -34.36505 -33.34920 -32.16941 -29.14980 -27.66415 -25.85882 -24.67507 -23.54399 -21.93126 -19.31752 -18.93354 -17.88053 -16.91336 -16.85788 -15.89680 -15.66672 -15.46937 -15.35023 -14.88483 -14.73785 -14.33440 -13.91247 -13.41998 -13.11646 -12.92617 -12.67480 -12.33572 -12.09579 -11.95964 -11.57998 -10.87964 -10.65278 -10.52480 -10.35547 -9.36576 -9.12083 -8.43681 -6.13390 0.27902 0.44497 1.56785 1.63402 1.81095 2.20427 2.63496 2.90413 3.30225 3.45091 3.86225 4.13074 4.14927 4.25358 4.43502 4.44360 4.47932 4.54194 4.63233 4.76531 4.81389 4.96053 5.12527 5.36703 5.57635 5.63540 6.13187 6.32045 6.37146 6.46218 6.76871 6.84566 6.93555 7.59633 8.95228 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.009227 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.318376 B = 3033.908629 C = 3510.829675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.276 3.724 4 C -0.187 4.187 5 C -0.062 4.062 6 C -0.129 4.129 7 C 0.070 3.930 8 H 0.018 0.982 9 C -0.554 4.554 10 H 0.044 0.956 11 C -0.030 4.030 12 N -0.943 5.943 13 Si 1.102 2.898 14 H -0.291 1.291 15 H -0.279 1.279 16 H -0.274 1.274 17 C 0.093 3.907 18 N -0.843 5.843 19 C 0.130 3.870 20 N -0.547 5.547 21 H 0.127 0.873 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.156 0.844 25 H 0.136 0.864 26 H 0.262 0.738 27 H 0.013 0.987 28 H 0.059 0.941 29 H 0.337 0.663 30 H 0.343 0.657 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -4.968 -7.156 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.229 6.229 3 C 0.097 3.903 4 C -0.207 4.207 5 C -0.088 4.088 6 C -0.133 4.133 7 C 0.050 3.950 8 H 0.036 0.964 9 C -0.592 4.592 10 H 0.062 0.938 11 C -0.228 4.228 12 N -0.582 5.582 13 Si 0.926 3.074 14 H -0.217 1.217 15 H -0.205 1.205 16 H -0.199 1.199 17 C -0.038 4.038 18 N -0.373 5.373 19 C -0.025 4.025 20 N -0.270 5.270 21 H 0.145 0.855 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.174 0.826 25 H 0.154 0.846 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.128 -4.850 -4.872 9.209 hybrid contribution 0.691 -0.452 -2.315 2.458 sum -5.436 -5.302 -7.188 10.456 Atomic orbital electron populations 1.23000 0.76298 1.04470 1.01843 1.86166 1.24056 1.24044 1.88667 1.19924 0.89842 0.84958 0.95561 1.21174 0.92060 0.99575 1.07872 1.21483 1.00598 0.91304 0.95417 1.21522 0.95041 0.98028 0.98681 1.17845 0.94725 0.87765 0.94685 0.96407 1.21895 1.15838 1.26129 0.95327 0.93767 1.26821 0.93889 0.98335 1.03745 1.70885 1.28864 1.23631 1.34796 0.83104 0.75644 0.75479 0.73140 1.21739 1.20505 1.19922 1.21581 0.97964 0.89480 0.94818 1.58363 1.08269 1.17543 1.53093 1.22141 0.92869 0.92954 0.94512 1.67233 1.41246 0.98985 1.19569 0.85508 0.93414 0.92696 0.82618 0.84594 0.92743 0.96930 0.92236 0.85039 0.84377 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.38 113.37 1.18 2.15 16 2 O -0.32 -10.57 10.48 -89.98 -0.94 -11.51 16 3 C 0.28 10.47 7.49 84.79 0.63 11.10 16 4 C -0.19 -6.85 10.04 22.46 0.23 -6.62 16 5 C -0.06 -2.51 9.23 22.44 0.21 -2.30 16 6 C -0.13 -5.64 4.65 -19.77 -0.09 -5.73 16 7 C 0.07 3.21 1.81 -12.29 -0.02 3.19 16 8 H 0.02 0.90 6.72 -2.39 -0.02 0.88 16 9 C -0.55 -29.23 7.69 25.60 0.20 -29.04 16 10 H 0.04 2.37 7.81 -2.91 -0.02 2.34 16 11 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 12 N -0.94 -55.61 13.58 21.45 0.29 -55.32 16 13 Si 1.10 50.83 29.90 68.60 2.05 52.88 16 14 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 C 0.09 3.56 5.88 86.30 0.51 4.07 16 18 N -0.84 -29.99 9.31 -186.72 -1.74 -31.73 16 19 C 0.13 5.45 10.04 84.63 0.85 6.30 16 20 N -0.55 -21.89 9.22 -308.95 -2.85 -24.73 16 21 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 23 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 24 H 0.16 4.75 8.06 -2.91 -0.02 4.73 16 25 H 0.14 5.21 7.96 -2.91 -0.02 5.19 16 26 H 0.26 15.15 6.09 -92.71 -0.56 14.59 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 2.27 7.60 -2.38 -0.02 2.25 16 29 H 0.34 11.50 9.06 -89.69 -0.81 10.69 16 30 H 0.34 9.75 9.08 -89.69 -0.81 8.94 16 31 H 0.16 6.23 7.65 -2.91 -0.02 6.21 16 Total: -1.00 -63.89 268.98 0.69 -63.21 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.27 Total: 25.27 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.15 Total: -18.06 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.29 Total: -111.78 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.94 Total: -11.51 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -63.89 0.69 -63.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266876.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.078 kcal (2) G-P(sol) polarization free energy of solvation -63.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds