Wall clock time and date at job start Mon Mar 30 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35671 * 117.00086 * 2 1 4 4 C 1.38918 * 119.68900 * 179.97438 * 3 2 1 5 5 C 1.38376 * 119.11711 * 179.97438 * 4 3 2 6 6 C 1.38831 * 118.48176 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.35107 * 179.72276 * 6 5 4 8 8 H 1.08996 * 109.47114 * 359.97438 * 7 6 5 9 9 C 1.50697 * 109.46860 * 119.99820 * 7 6 5 10 10 H 1.08001 * 120.00450 * 5.43534 * 9 7 6 11 11 C 1.37886 * 119.99670 * 185.43833 * 9 7 6 12 12 N 1.31509 * 120.00191 * 9.42285 * 11 9 7 13 13 Si 1.86800 * 119.99995 * 189.42024 * 11 9 7 14 14 H 1.48504 * 109.46979 * 84.99214 * 13 11 9 15 15 H 1.48501 * 109.47146 * 204.99496 * 13 11 9 16 16 H 1.48506 * 109.47045 * 324.99571 * 13 11 9 17 17 C 1.53001 * 109.46756 * 239.99101 * 7 6 5 18 18 N 1.46902 * 109.46923 * 63.16191 * 17 7 6 19 19 C 1.38045 * 119.29221 * 359.97438 * 6 5 4 20 20 N 1.31961 * 120.83210 * 359.97438 * 19 6 5 21 21 H 1.08996 * 109.47323 * 60.00116 * 1 2 3 22 22 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47143 * 300.00087 * 1 2 3 24 24 H 1.08003 * 120.43887 * 359.97438 * 4 3 2 25 25 H 1.07996 * 120.75743 * 179.97438 * 5 4 3 26 26 H 0.97002 * 120.00518 * 179.97438 * 12 11 9 27 27 H 1.09002 * 109.47304 * 183.15607 * 17 7 6 28 28 H 1.08994 * 109.47521 * 303.16184 * 17 7 6 29 29 H 1.00897 * 111.00080 * 56.04055 * 18 17 7 30 30 H 1.00898 * 110.99886 * 179.97438 * 18 17 7 31 31 H 1.07997 * 119.58510 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2504 3.6491 -0.0005 7 6 3.8768 5.0198 0.0052 8 1 4.9625 4.9231 0.0097 9 6 3.4444 5.7747 -1.2253 10 1 2.7145 5.3438 -1.8947 11 6 3.9806 7.0157 -1.4966 12 7 4.9978 7.4609 -0.7919 13 14 3.2622 8.0647 -2.8652 14 1 2.1057 8.8360 -2.3426 15 1 4.2983 9.0037 -3.3650 16 1 2.8113 7.1882 -3.9759 17 6 3.4276 5.7805 1.2543 18 7 3.9142 5.0844 2.4529 19 6 1.8771 3.5097 -0.0010 20 7 1.3186 2.3140 -0.0015 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.0229 0.3695 0.0014 25 1 5.1254 2.5946 0.0008 26 1 5.3753 8.3338 -0.9830 27 1 3.8353 6.7911 1.2305 28 1 2.3390 5.8284 1.2788 29 1 4.9162 4.9700 2.4229 30 1 3.6306 5.5679 3.2919 31 1 1.2517 4.3902 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266878.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:31 Heat of formation + Delta-G solvation = -11.766563 kcal Electronic energy + Delta-G solvation = -14951.953399 eV Core-core repulsion = 12426.382480 eV Total energy + Delta-G solvation = -2525.570919 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.94149 -37.59566 -35.10627 -32.28217 -31.77157 -30.58768 -27.77915 -26.36131 -23.95556 -23.06879 -22.04816 -19.83094 -17.83382 -16.80897 -16.06052 -15.51663 -15.12980 -14.69773 -13.94512 -13.88061 -13.68742 -13.09273 -12.84737 -12.54001 -12.14932 -12.03466 -11.60149 -11.31610 -11.01980 -10.63256 -10.61845 -10.17161 -9.79154 -9.50306 -9.01016 -8.85704 -8.48544 -7.74548 -7.49441 -6.17380 -4.20255 1.91499 2.12580 3.24312 3.31361 3.34993 3.59051 4.32735 4.59711 5.01484 5.14238 5.46142 5.56093 5.61958 5.67254 5.75723 5.84715 5.90249 6.14039 6.34282 6.59230 6.75144 6.87264 7.05173 7.19443 7.33252 7.73108 7.78109 7.82940 7.97761 8.23500 8.31873 8.57834 8.84219 9.44336 10.90622 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.007965 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.588817 B = 3514.545481 C = 3931.912775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.320 6.320 3 C 0.279 3.721 4 C -0.190 4.190 5 C -0.053 4.053 6 C -0.088 4.088 7 C 0.088 3.912 8 H 0.042 0.958 9 C -0.516 4.516 10 H 0.060 0.940 11 C 0.067 3.933 12 N -0.887 5.887 13 Si 0.891 3.109 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.071 3.929 18 N -0.857 5.857 19 C 0.136 3.864 20 N -0.543 5.543 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.127 0.873 25 H 0.131 0.869 26 H 0.262 0.738 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.331 0.669 30 H 0.321 0.679 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -7.693 2.988 9.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.228 6.228 3 C 0.101 3.899 4 C -0.211 4.211 5 C -0.079 4.079 6 C -0.090 4.090 7 C 0.069 3.931 8 H 0.060 0.940 9 C -0.554 4.554 10 H 0.078 0.922 11 C -0.136 4.136 12 N -0.525 5.525 13 Si 0.719 3.281 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.059 4.059 18 N -0.384 5.384 19 C -0.019 4.019 20 N -0.265 5.265 21 H 0.072 0.928 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.145 0.855 25 H 0.149 0.851 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.846 -8.486 2.734 10.148 hybrid contribution 0.847 1.777 -0.555 2.046 sum -3.999 -6.709 2.179 8.108 Atomic orbital electron populations 1.22679 0.78448 1.01799 1.02130 1.86150 1.21964 1.25526 1.89174 1.19631 0.89310 0.84435 0.96501 1.20876 0.91774 0.99029 1.09413 1.21302 1.00176 0.90904 0.95519 1.21166 0.94115 0.97785 0.95950 1.17759 0.96221 0.86010 0.93130 0.94017 1.21084 1.24778 1.02066 1.07474 0.92166 1.24967 0.94278 0.97941 0.96385 1.69943 1.22078 1.19396 1.41073 0.86613 0.78973 0.80323 0.82231 1.20404 1.21259 1.19805 1.21975 0.98047 0.97032 0.88822 1.59016 1.17637 1.56927 1.04811 1.22164 0.93247 0.92391 0.94081 1.67206 1.41142 0.98997 1.19202 0.92801 0.89559 0.92797 0.85491 0.85125 0.92781 0.93560 0.93358 0.85809 0.86937 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.38 101.05 1.05 1.66 16 2 O -0.32 -5.46 10.48 -18.71 -0.20 -5.66 16 3 C 0.28 5.34 7.49 -17.12 -0.13 5.21 16 4 C -0.19 -3.44 10.04 -39.28 -0.39 -3.83 16 5 C -0.05 -1.02 9.80 -39.31 -0.39 -1.41 16 6 C -0.09 -1.87 4.43 -104.47 -0.46 -2.33 16 7 C 0.09 2.06 1.98 -92.92 -0.18 1.88 16 8 H 0.04 1.06 7.87 -51.93 -0.41 0.65 16 9 C -0.52 -13.32 8.20 -34.44 -0.28 -13.61 16 10 H 0.06 1.57 7.57 -52.49 -0.40 1.18 16 11 C 0.07 1.75 5.18 -17.82 -0.09 1.66 16 12 N -0.89 -23.98 12.15 55.43 0.67 -23.31 16 13 Si 0.89 20.46 29.55 -169.99 -5.02 15.44 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.07 1.56 5.93 -3.82 -0.02 1.53 16 18 N -0.86 -15.92 9.29 -10.37 -0.10 -16.01 16 19 C 0.14 2.84 9.81 -17.57 -0.17 2.66 16 20 N -0.54 -10.91 9.22 -13.33 -0.12 -11.03 16 21 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 22 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 24 H 0.13 1.95 8.06 -52.48 -0.42 1.52 16 25 H 0.13 2.27 8.00 -52.49 -0.42 1.85 16 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.05 1.12 6.83 -51.93 -0.35 0.76 16 28 H 0.05 1.05 7.29 -51.93 -0.38 0.67 16 29 H 0.33 5.96 8.99 -39.29 -0.35 5.60 16 30 H 0.32 5.23 9.08 -39.29 -0.36 4.87 16 31 H 0.15 3.11 7.55 -52.49 -0.40 2.71 16 LS Contribution 269.15 15.07 4.06 4.06 Total: -1.00 -28.02 269.15 -5.67 -33.69 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -3.89 Total: 9.40 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.08 Total: -6.59 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.45 Total: -50.35 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.20 Total: -5.66 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.02 -5.67 -33.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266878.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.925 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds