Wall clock time and date at job start Mon Mar 30 2020 02:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46721 * 2 1 4 4 C 1.50693 * 109.47071 * 120.00518 * 2 1 3 5 5 H 1.08005 * 120.00172 * 120.00091 * 4 2 1 6 6 C 1.37884 * 119.99890 * 299.99510 * 4 2 1 7 7 N 1.31513 * 119.99803 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99851 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47103 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46935 * 120.00233 * 8 6 4 11 11 H 1.48497 * 109.47269 * 240.00335 * 8 6 4 12 12 C 1.50696 * 109.46640 * 240.00329 * 2 1 3 13 13 C 1.34976 * 126.68541 * 274.95367 * 12 2 1 14 14 N 1.34392 * 108.10279 * 180.02562 * 13 12 2 15 15 C 1.29781 * 109.18638 * 359.97438 * 14 13 12 16 16 N 1.35728 * 108.60699 * 0.05574 * 15 14 13 17 17 C 1.46536 * 123.53425 * 179.91254 * 16 15 14 18 18 C 1.53474 * 108.10512 * 343.70659 * 17 16 15 19 19 O 1.43033 * 109.64112 * 48.30085 * 18 17 16 20 20 C 1.43460 * 114.06492 * 289.82584 * 19 18 17 21 21 H 1.08998 * 109.47225 * 59.99475 * 1 2 3 22 22 H 1.08996 * 109.47401 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46986 * 299.99739 * 1 2 3 24 24 H 0.96997 * 119.99477 * 180.02562 * 7 6 4 25 25 H 1.07996 * 125.94599 * 0.02562 * 13 12 2 26 26 H 1.09001 * 109.73901 * 224.05625 * 17 16 15 27 27 H 1.08995 * 109.77629 * 103.37577 * 17 16 15 28 28 H 1.09002 * 109.43836 * 168.34464 * 18 17 16 29 29 H 1.08999 * 109.43747 * 288.26293 * 18 17 16 30 30 H 1.08997 * 109.83253 * 290.11842 * 20 19 18 31 31 H 1.08997 * 109.84352 * 169.26334 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1464 -2.2873 3.6036 10 1 3.1466 -0.1877 4.8164 11 1 1.1661 -1.5870 4.8159 12 6 2.0322 -0.7103 -1.2305 13 6 2.2128 -2.0399 -1.3768 14 7 2.6728 -2.2647 -2.6194 15 6 2.7828 -1.1327 -3.2447 16 7 2.3925 -0.1368 -2.4093 17 6 2.3890 1.2797 -2.7844 18 6 3.2530 1.4421 -4.0424 19 8 2.8810 0.4579 -5.0114 20 6 3.2538 -0.8815 -4.6577 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7089 1.1611 3.4844 25 1 2.0211 -2.7922 -0.6260 26 1 2.8050 1.8766 -1.9727 27 1 1.3695 1.6032 -2.9940 28 1 3.1022 2.4375 -4.4601 29 1 4.3032 1.3140 -3.7802 30 1 4.3370 -0.9900 -4.7105 31 1 2.7783 -1.5894 -5.3366 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281507.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:05 Heat of formation + Delta-G solvation = 11.482202 kcal Electronic energy + Delta-G solvation = -15346.149627 eV Core-core repulsion = 12821.586851 eV Total energy + Delta-G solvation = -2524.562776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.74311 -38.09239 -34.55323 -33.55667 -31.16274 -29.70434 -28.49524 -25.48455 -24.80082 -23.42312 -21.88861 -19.79554 -18.67320 -17.12075 -16.19861 -16.02627 -15.31454 -14.98919 -14.59670 -14.47470 -13.71765 -13.11175 -12.77744 -12.51299 -12.19946 -11.78588 -11.49398 -11.21749 -10.99221 -10.85550 -10.57638 -10.26768 -10.15634 -9.84477 -9.40284 -9.01830 -8.82681 -8.46423 -7.34647 -6.10944 -4.16648 2.74273 3.14612 3.25907 3.34292 3.39985 3.70950 3.88896 4.37632 4.48338 4.72665 4.93377 5.17548 5.22789 5.34703 5.47491 5.57578 5.69347 5.76978 6.31454 6.53573 6.66234 6.82157 6.86928 7.05015 7.07465 7.57305 7.58898 7.75603 7.81982 7.99590 8.27296 8.76992 8.86004 9.48790 10.95949 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.045137 B = 0.007894 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.186772 B = 3546.274983 C = 3812.125203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.109 3.891 3 H 0.031 0.969 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.053 3.947 13 C -0.049 4.049 14 N -0.478 5.478 15 C 0.117 3.883 16 N -0.459 5.459 17 C 0.074 3.926 18 C 0.051 3.949 19 O -0.378 6.378 20 C 0.159 3.841 21 H 0.004 0.996 22 H 0.033 0.967 23 H 0.090 0.910 24 H 0.261 0.739 25 H 0.169 0.831 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 2.292 -10.466 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.049 0.951 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.062 4.062 13 C -0.194 4.194 14 N -0.198 5.198 15 C -0.143 4.143 16 N -0.145 5.145 17 C -0.050 4.050 18 C -0.026 4.026 19 O -0.295 6.295 20 C 0.081 3.919 21 H 0.023 0.977 22 H 0.052 0.948 23 H 0.108 0.892 24 H 0.071 0.929 25 H 0.186 0.814 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.266 1.835 -10.866 11.494 hybrid contribution 0.160 0.349 1.623 1.667 sum 3.427 2.184 -9.244 10.098 Atomic orbital electron populations 1.21758 0.96986 0.99800 1.00140 1.17387 0.92752 0.94762 0.86120 0.95145 1.21124 1.31278 1.12697 0.89398 0.91748 1.24950 0.94935 0.94999 0.99091 1.69884 1.36667 1.22951 1.23546 0.86439 0.78686 0.79749 0.82646 1.19544 1.21044 1.20883 1.22305 1.01603 0.94479 0.87817 1.22063 1.08822 0.94528 0.94009 1.69728 1.18361 1.24908 1.06843 1.23520 1.09874 0.84484 0.96428 1.45109 1.50307 1.07022 1.12047 1.22518 1.02680 0.81185 0.98587 1.22950 0.97869 0.93498 0.88319 1.88077 1.81734 1.15836 1.43885 1.21009 0.99344 0.83495 0.88023 0.97671 0.94814 0.89184 0.92877 0.81377 0.88254 0.89455 0.86773 0.91886 0.90810 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.95 37.16 0.33 -2.76 16 2 C 0.11 2.71 2.59 -92.93 -0.24 2.47 16 3 H 0.03 0.79 7.76 -51.93 -0.40 0.39 16 4 C -0.51 -13.59 8.27 -34.44 -0.28 -13.87 16 5 H 0.06 1.74 6.86 -52.48 -0.36 1.38 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.05 1.21 5.91 -81.93 -0.48 0.72 16 13 C -0.05 -1.11 10.81 -17.59 -0.19 -1.30 16 14 N -0.48 -10.34 11.24 -10.56 -0.12 -10.46 16 15 C 0.12 2.24 7.79 -155.21 -1.21 1.03 16 16 N -0.46 -9.03 3.14 -109.08 -0.34 -9.37 16 17 C 0.07 1.11 7.03 -3.78 -0.03 1.08 16 18 C 0.05 0.60 6.82 37.40 0.26 0.86 16 19 O -0.38 -5.20 10.78 -35.23 -0.38 -5.58 16 20 C 0.16 2.25 7.29 36.18 0.26 2.51 16 21 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.17 3.78 7.68 -52.49 -0.40 3.38 16 26 H 0.10 1.45 7.91 -51.93 -0.41 1.04 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -30.56 259.63 -6.98 -37.54 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -3.98 Total: -0.28 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -1.68 Total: -7.69 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.17 Total: -43.79 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.38 Total: -5.58 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.56 -6.98 -37.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281507.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.027 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds