Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99642 * 2 1 4 4 H 1.48501 * 109.47247 * 270.00104 * 3 2 1 5 5 H 1.48496 * 109.47406 * 30.00141 * 3 2 1 6 6 H 1.48499 * 109.46682 * 150.00175 * 3 2 1 7 7 C 1.37869 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99974 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46909 * 299.99860 * 9 7 2 11 11 N 1.46899 * 109.47355 * 59.99364 * 9 7 2 12 12 C 1.50694 * 109.47072 * 179.97438 * 9 7 2 13 13 N 1.33472 * 125.50112 * 284.99656 * 12 9 7 14 14 C 1.30330 * 109.72857 * 179.97438 * 13 12 9 15 15 N 1.34681 * 108.04426 * 0.05117 * 14 13 12 16 16 N 1.30977 * 125.49537 * 104.99736 * 12 9 7 17 17 C 1.46297 * 125.04753 * 179.67893 * 15 14 13 18 18 C 1.53190 * 108.83522 * 343.33515 * 17 15 14 19 19 C 1.53156 * 109.60255 * 49.86205 * 18 17 15 20 20 C 1.50925 * 127.90406 * 180.09506 * 14 13 12 21 21 H 0.97001 * 120.00395 * 359.97438 * 1 2 3 22 22 H 1.00904 * 110.99437 * 60.00496 * 11 9 7 23 23 H 1.00893 * 110.99937 * 183.95329 * 11 9 7 24 24 H 1.08996 * 109.58682 * 103.02438 * 17 15 14 25 25 H 1.08992 * 109.58872 * 223.45354 * 17 15 14 26 26 H 1.09002 * 109.31090 * 289.88268 * 18 17 15 27 27 H 1.09003 * 109.50076 * 169.96319 * 18 17 15 28 28 H 1.08993 * 109.50604 * 171.00696 * 19 18 17 29 29 H 1.09004 * 109.50570 * 50.87493 * 19 18 17 30 30 H 1.08994 * 109.72112 * 283.70664 * 20 14 13 31 31 H 1.09005 * 109.71494 * 44.30452 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1991 12 6 2.2304 -3.6445 0.0005 13 7 2.9478 -4.0509 -1.0491 14 6 3.6936 -5.0634 -0.7067 15 7 3.4631 -5.3307 0.5930 16 7 2.5149 -4.4018 1.0306 17 6 4.1020 -6.4028 1.3563 18 6 4.7273 -7.4019 0.3777 19 6 5.5795 -6.6504 -0.6492 20 6 4.6613 -5.8359 -1.5697 21 1 -0.4851 0.8400 0.0004 22 1 0.9652 -2.5260 -2.0380 23 1 -0.1570 -3.4139 -1.1906 24 1 4.8799 -5.9836 1.9943 25 1 3.3566 -6.9088 1.9699 26 1 3.9354 -7.9467 -0.1363 27 1 5.3547 -8.1044 0.9263 28 1 6.1486 -7.3655 -1.2430 29 1 6.2648 -5.9788 -0.1319 30 1 4.1111 -6.5077 -2.2284 31 1 5.2567 -5.1435 -2.1650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261297736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = 80.047023 kcal Electronic energy + Delta-G solvation = -15078.999090 eV Core-core repulsion = 12589.702258 eV Total energy + Delta-G solvation = -2489.296832 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.62655 -36.95945 -34.22434 -32.73674 -31.36468 -29.66789 -29.07407 -26.08205 -24.23108 -22.68861 -22.28483 -19.40174 -19.09784 -16.56611 -16.14353 -15.70049 -14.74023 -14.57636 -14.25466 -14.11286 -14.02236 -13.56827 -12.71981 -12.38642 -11.93462 -11.85311 -11.41099 -11.28468 -11.09359 -10.73308 -10.70155 -10.65691 -9.93192 -9.32784 -9.19220 -9.03207 -8.44907 -8.33599 -7.12712 -5.80710 -3.93441 2.26432 2.84078 3.41284 3.46563 3.50194 3.75990 4.29786 4.42839 4.52724 4.57207 4.58503 5.09220 5.21753 5.30709 5.45023 5.47131 5.55844 5.63822 5.69144 5.74035 5.94322 6.06395 6.45317 7.11816 7.23947 7.38763 7.49997 7.99563 8.22209 8.65823 8.96957 9.12495 9.20754 9.72882 11.24737 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.045865 B = 0.007124 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.341580 B = 3929.563065 C = 4055.210154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.084 3.916 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.309 3.691 10 H 0.059 0.941 11 N -0.796 5.796 12 C 0.228 3.772 13 N -0.529 5.529 14 C 0.253 3.747 15 N -0.395 5.395 16 N -0.332 5.332 17 C 0.131 3.869 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.037 4.037 21 H 0.256 0.744 22 H 0.329 0.671 23 H 0.296 0.704 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.020 -15.058 -0.940 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.123 4.123 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.195 3.805 10 H 0.077 0.923 11 N -0.321 5.321 12 C -0.056 4.056 13 N -0.257 5.257 14 C -0.024 4.024 15 N -0.187 5.187 16 N -0.159 5.159 17 C 0.008 3.992 18 C -0.173 4.173 19 C -0.163 4.163 20 C -0.076 4.076 21 H 0.066 0.934 22 H 0.142 0.858 23 H 0.106 0.894 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.168 -14.079 -0.199 16.802 hybrid contribution 1.281 -0.202 -0.123 1.303 sum 10.449 -14.281 -0.323 17.698 Atomic orbital electron populations 1.70101 1.05608 1.25775 1.46879 1.24890 0.94685 0.98483 0.94210 0.86664 0.79838 0.83712 0.78061 1.20607 1.21233 1.20182 1.20659 0.92184 0.89060 1.54209 0.92997 1.17767 0.85472 0.85472 0.91743 0.92331 1.59309 1.27041 1.41056 1.04650 1.27162 0.96901 0.96920 0.84585 1.70159 1.11652 1.12210 1.31636 1.24186 0.98170 0.94987 0.85096 1.50246 1.33334 1.26093 1.09044 1.78025 1.09247 1.05033 1.23563 1.21612 0.97070 0.86229 0.94253 1.21938 1.00173 0.97607 0.97623 1.21696 0.97842 0.99320 0.97491 1.20247 0.94202 0.97412 0.95778 0.93371 0.85836 0.89394 0.90267 0.89355 0.90701 0.89152 0.89913 0.91022 0.88991 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.49 12.77 55.43 0.71 -24.79 16 2 C 0.08 2.45 5.39 -17.82 -0.10 2.35 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.40 8.71 -34.44 -0.30 -15.70 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.31 8.45 3.16 -70.02 -0.22 8.23 16 10 H 0.06 1.74 8.14 -51.93 -0.42 1.31 16 11 N -0.80 -20.36 8.53 -6.65 -0.06 -20.41 16 12 C 0.23 5.68 6.90 -156.43 -1.08 4.60 16 13 N -0.53 -12.03 11.02 -8.03 -0.09 -12.12 16 14 C 0.25 4.62 7.72 -155.78 -1.20 3.41 16 15 N -0.39 -7.25 4.04 -58.36 -0.24 -7.48 16 16 N -0.33 -7.78 12.74 32.50 0.41 -7.37 16 17 C 0.13 1.61 7.30 -4.05 -0.03 1.58 16 18 C -0.14 -1.13 5.94 -26.55 -0.16 -1.28 16 19 C -0.13 -1.07 5.96 -26.43 -0.16 -1.23 16 20 C -0.04 -0.44 6.33 -27.55 -0.17 -0.61 16 21 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.33 8.32 8.84 -39.29 -0.35 7.97 16 23 H 0.30 6.87 9.06 -39.30 -0.36 6.52 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 264.56 15.07 3.99 3.99 Total: -1.00 -34.70 264.56 -7.76 -42.46 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.05 Total: 7.12 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.42 Total: 1.35 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: 0.74 Total: -72.17 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.70 -7.76 -42.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.508 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds