Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99642 * 2 1 4 4 H 1.48501 * 109.47247 * 270.00104 * 3 2 1 5 5 H 1.48496 * 109.47406 * 30.00141 * 3 2 1 6 6 H 1.48499 * 109.46682 * 150.00175 * 3 2 1 7 7 C 1.37869 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99974 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46909 * 299.99860 * 9 7 2 11 11 N 1.46899 * 109.47355 * 59.99364 * 9 7 2 12 12 C 1.50694 * 109.47072 * 179.97438 * 9 7 2 13 13 N 1.33472 * 125.50112 * 284.99656 * 12 9 7 14 14 C 1.30330 * 109.72857 * 179.97438 * 13 12 9 15 15 N 1.34681 * 108.04426 * 0.05117 * 14 13 12 16 16 N 1.30977 * 125.49537 * 104.99736 * 12 9 7 17 17 C 1.46297 * 125.04753 * 179.67893 * 15 14 13 18 18 C 1.53190 * 108.83522 * 343.33515 * 17 15 14 19 19 C 1.53156 * 109.60255 * 49.86205 * 18 17 15 20 20 C 1.50925 * 127.90406 * 180.09506 * 14 13 12 21 21 H 0.97001 * 120.00395 * 359.97438 * 1 2 3 22 22 H 1.00904 * 110.99437 * 60.00496 * 11 9 7 23 23 H 1.00893 * 110.99937 * 183.95329 * 11 9 7 24 24 H 1.08996 * 109.58682 * 103.02438 * 17 15 14 25 25 H 1.08992 * 109.58872 * 223.45354 * 17 15 14 26 26 H 1.09002 * 109.31090 * 289.88268 * 18 17 15 27 27 H 1.09003 * 109.50076 * 169.96319 * 18 17 15 28 28 H 1.08993 * 109.50604 * 171.00696 * 19 18 17 29 29 H 1.09004 * 109.50570 * 50.87493 * 19 18 17 30 30 H 1.08994 * 109.72112 * 283.70664 * 20 14 13 31 31 H 1.09005 * 109.71494 * 44.30452 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1991 12 6 2.2304 -3.6445 0.0005 13 7 2.9478 -4.0509 -1.0491 14 6 3.6936 -5.0634 -0.7067 15 7 3.4631 -5.3307 0.5930 16 7 2.5149 -4.4018 1.0306 17 6 4.1020 -6.4028 1.3563 18 6 4.7273 -7.4019 0.3777 19 6 5.5795 -6.6504 -0.6492 20 6 4.6613 -5.8359 -1.5697 21 1 -0.4851 0.8400 0.0004 22 1 0.9652 -2.5260 -2.0380 23 1 -0.1570 -3.4139 -1.1906 24 1 4.8799 -5.9836 1.9943 25 1 3.3566 -6.9088 1.9699 26 1 3.9354 -7.9467 -0.1363 27 1 5.3547 -8.1044 0.9263 28 1 6.1486 -7.3655 -1.2430 29 1 6.2648 -5.9788 -0.1319 30 1 4.1111 -6.5077 -2.2284 31 1 5.2567 -5.1435 -2.1650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = 53.697947 kcal Electronic energy + Delta-G solvation = -15080.141671 eV Core-core repulsion = 12589.702258 eV Total energy + Delta-G solvation = -2490.439413 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.16022 -38.09888 -36.16435 -34.06806 -33.46712 -31.16997 -30.29466 -28.21161 -25.51228 -24.36691 -23.47029 -21.20855 -20.20792 -18.61857 -17.58829 -17.03069 -16.65399 -16.18500 -15.69791 -15.37064 -15.12540 -14.90375 -14.40506 -14.13897 -13.37018 -13.14455 -13.08304 -12.74293 -12.62642 -12.08905 -12.03880 -11.98383 -11.70274 -11.39677 -10.90890 -10.60207 -10.58339 -10.11352 -9.15570 -8.03552 -6.25041 0.73781 1.41361 1.43452 1.52241 1.55995 2.02850 2.47281 3.12119 3.21948 3.48078 3.74704 3.77848 4.05657 4.22859 4.31165 4.39472 4.40454 4.63610 4.82049 4.91910 4.95049 5.05491 5.26914 5.28672 5.48552 5.54810 5.69419 6.02335 6.10867 6.52546 6.95302 7.10622 7.35370 7.45422 9.01823 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.045865 B = 0.007124 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.341580 B = 3929.563065 C = 4055.210154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.038 3.962 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.034 0.966 9 C 0.315 3.685 10 H 0.022 0.978 11 N -0.798 5.798 12 C 0.207 3.793 13 N -0.567 5.567 14 C 0.258 3.742 15 N -0.389 5.389 16 N -0.367 5.367 17 C 0.113 3.887 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.038 4.038 21 H 0.261 0.739 22 H 0.330 0.670 23 H 0.308 0.692 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.258 -16.648 -1.480 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.167 4.167 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.053 0.947 9 C 0.201 3.799 10 H 0.040 0.960 11 N -0.324 5.324 12 C -0.078 4.078 13 N -0.296 5.296 14 C -0.019 4.019 15 N -0.181 5.181 16 N -0.195 5.195 17 C -0.007 4.007 18 C -0.163 4.163 19 C -0.157 4.157 20 C -0.077 4.077 21 H 0.070 0.930 22 H 0.142 0.858 23 H 0.118 0.882 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.149 0.851 28 H 0.142 0.858 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.426 -15.709 -0.726 19.438 hybrid contribution 0.639 0.144 0.092 0.661 sum 12.064 -15.565 -0.634 19.703 Atomic orbital electron populations 1.70212 1.06956 1.26897 1.47171 1.25667 0.95621 1.01851 0.93512 0.85588 0.78390 0.79266 0.78405 1.19720 1.19985 1.20194 1.20807 0.91490 0.90748 1.55050 0.94728 1.17254 0.85658 0.86244 0.90714 0.96029 1.59150 1.27149 1.41946 1.04113 1.26455 0.97951 0.97320 0.86046 1.70052 1.13110 1.14599 1.31798 1.25351 0.97267 0.93646 0.85596 1.50553 1.31920 1.25883 1.09741 1.77829 1.11258 1.06367 1.24049 1.22260 0.97354 0.85588 0.95548 1.22004 1.00555 0.96719 0.96990 1.21749 0.97096 0.99540 0.97277 1.20663 0.93592 0.97572 0.95892 0.93041 0.85752 0.88155 0.89224 0.88769 0.90373 0.85095 0.85836 0.91474 0.86758 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.75 12.77 21.44 0.27 -53.48 16 2 C 0.04 2.24 5.39 84.65 0.46 2.69 16 3 Si 0.96 46.38 29.54 68.60 2.03 48.41 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.54 -33.17 8.71 25.60 0.22 -32.95 16 8 H 0.03 2.18 7.74 -2.91 -0.02 2.16 16 9 C 0.31 18.08 3.16 43.42 0.14 18.22 16 10 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 11 N -0.80 -42.44 8.53 -174.96 -1.49 -43.93 16 12 C 0.21 10.69 6.90 138.48 0.96 11.65 16 13 N -0.57 -26.24 11.02 -179.31 -1.98 -28.21 16 14 C 0.26 9.19 7.72 138.36 1.07 10.25 16 15 N -0.39 -14.04 4.04 -338.55 -1.37 -15.41 16 16 N -0.37 -17.70 12.74 -51.08 -0.65 -18.35 16 17 C 0.11 2.51 7.30 86.48 0.63 3.14 16 18 C -0.12 -1.52 5.94 30.71 0.18 -1.33 16 19 C -0.12 -1.48 5.96 30.79 0.18 -1.29 16 20 C -0.04 -0.78 6.33 30.06 0.19 -0.59 16 21 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 22 H 0.33 17.28 8.84 -89.69 -0.79 16.49 16 23 H 0.31 14.88 9.06 -89.70 -0.81 14.06 16 24 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 27 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.94 8.13 -2.38 -0.02 0.92 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -78.99 264.56 0.39 -78.60 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.45 Total: 22.58 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 4.03 Total: 9.79 kcal Atomic # 7 Polarization: -154.17 SS G_CDS: -5.21 Total: -159.38 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -78.99 0.39 -78.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.295 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds