Wall clock time and date at job start Mon Mar 30 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47194 * 342.88536 * 3 2 1 5 5 C 1.37104 * 119.99879 * 263.92573 * 4 3 2 6 6 H 1.08002 * 119.99951 * 199.75156 * 5 4 3 7 7 C 1.38953 * 119.99949 * 19.75704 * 5 4 3 8 8 N 1.31409 * 119.99802 * 21.74642 * 7 5 4 9 9 Si 1.86798 * 119.99640 * 201.74420 * 7 5 4 10 10 H 1.48495 * 109.46963 * 90.00192 * 9 7 5 11 11 H 1.48500 * 109.46756 * 210.00093 * 9 7 5 12 12 H 1.48500 * 109.47239 * 329.99664 * 9 7 5 13 13 C 1.34779 * 120.00292 * 83.93004 * 4 3 2 14 14 O 1.21283 * 120.00255 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99537 * 359.97438 * 13 4 3 16 16 N 1.46900 * 109.46851 * 180.02562 * 15 13 4 17 17 C 1.46898 * 110.99894 * 179.97438 * 16 15 13 18 18 C 1.52998 * 117.49838 * 223.74248 * 17 16 15 19 19 C 1.53003 * 117.49827 * 155.08385 * 17 16 15 20 20 H 4.40639 * 5.51485 * 179.97438 * 4 1 2 21 21 H 1.09002 * 109.46980 * 222.88907 * 3 2 1 22 22 H 1.08994 * 109.47344 * 102.88716 * 3 2 1 23 23 H 0.96998 * 119.99692 * 180.02562 * 8 7 5 24 24 H 1.08992 * 109.47015 * 60.00069 * 15 13 4 25 25 H 1.08996 * 109.46837 * 299.99919 * 15 13 4 26 26 H 1.00901 * 111.00083 * 56.04280 * 16 15 13 27 27 H 1.09001 * 115.54782 * 9.41468 * 17 16 15 28 28 H 1.08997 * 117.50100 * 0.02562 * 18 17 16 29 29 H 1.08998 * 117.49734 * 145.02025 * 18 17 16 30 30 H 1.08999 * 117.49769 * 214.97942 * 19 17 16 31 31 H 1.08996 * 117.49695 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3192 0.4065 5 6 3.4820 -1.5492 1.7128 6 1 4.1256 -2.3798 1.9623 7 6 3.0057 -0.7137 2.7156 8 7 1.9243 0.0051 2.5135 9 14 3.9024 -0.6124 4.3512 10 1 4.9278 0.4598 4.2879 11 1 2.9301 -0.3044 5.4305 12 1 4.5620 -1.9121 4.6354 13 6 3.2437 -2.3073 -0.5037 14 8 3.6480 -3.4000 -0.1671 15 6 2.8617 -2.0545 -1.9394 16 7 3.0687 -3.2791 -2.7240 17 6 2.7053 -3.0700 -4.1319 18 6 1.8922 -4.1669 -4.8220 19 6 3.3691 -3.9721 -5.1743 20 1 -1.0498 -0.0004 0.0003 21 1 3.0090 0.7538 0.6994 22 1 3.0093 0.2300 -1.0017 23 1 1.5920 0.5886 3.2134 24 1 3.4807 -1.2540 -2.3445 25 1 1.8125 -1.7637 -1.9904 26 1 2.5549 -4.0526 -2.3293 27 1 2.5013 -2.0377 -4.4164 28 1 1.6266 -5.0436 -4.2313 29 1 1.1535 -3.8564 -5.5609 30 1 3.6013 -3.5334 -6.1447 31 1 4.0757 -4.7204 -4.8154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300785352.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:37 Heat of formation + Delta-G solvation = 44.601283 kcal Electronic energy + Delta-G solvation = -14859.626664 eV Core-core repulsion = 12336.500039 eV Total energy + Delta-G solvation = -2523.126625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.57510 -38.56496 -37.03688 -34.35901 -33.67500 -33.01804 -28.59857 -27.67374 -25.61855 -23.20277 -22.10630 -20.90763 -19.68015 -18.41191 -17.98247 -16.99494 -16.69741 -16.44481 -15.86317 -15.57968 -14.87632 -14.39065 -14.07926 -13.85743 -13.73174 -13.46955 -13.00911 -12.78403 -12.45939 -12.33328 -12.16380 -11.82970 -11.27480 -11.16023 -11.08784 -10.65724 -10.28800 -9.81274 -9.16239 -8.31293 -5.93323 1.37399 1.43277 1.54139 1.89385 2.12742 2.33112 2.38389 2.83111 3.00476 3.05947 3.45112 3.87420 4.01035 4.07092 4.11874 4.21618 4.40033 4.51994 4.68869 4.79248 4.81806 4.94254 5.08678 5.32047 5.41863 5.47973 5.93339 6.15883 6.29688 6.47491 7.14362 7.16406 7.42423 8.00319 8.67020 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.040209 B = 0.007318 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.200340 B = 3825.437203 C = 4325.920565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.154 4.154 3 C 0.234 3.766 4 N -0.453 5.453 5 C -0.353 4.353 6 H 0.072 0.928 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.983 3.017 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.440 3.560 14 O -0.619 6.619 15 C 0.068 3.932 16 N -0.656 5.656 17 C 0.004 3.996 18 C -0.198 4.198 19 C -0.167 4.167 20 H 0.232 0.768 21 H 0.090 0.910 22 H 0.100 0.900 23 H 0.272 0.728 24 H 0.110 0.890 25 H 0.060 0.940 26 H 0.342 0.658 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 1.984 -11.113 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.156 4.156 3 C 0.111 3.889 4 N -0.172 5.172 5 C -0.481 4.481 6 H 0.090 0.910 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.807 3.193 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.230 3.770 14 O -0.505 6.505 15 C -0.064 4.064 16 N -0.287 5.287 17 C -0.106 4.106 18 C -0.237 4.237 19 C -0.205 4.205 20 H 0.248 0.752 21 H 0.108 0.892 22 H 0.118 0.882 23 H 0.082 0.918 24 H 0.128 0.872 25 H 0.078 0.922 26 H 0.161 0.839 27 H 0.141 0.859 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.376 1.735 -10.903 11.125 hybrid contribution -0.852 -0.064 1.305 1.560 sum -2.228 1.672 -9.598 9.994 Atomic orbital electron populations 1.25121 0.96333 1.00161 1.04693 1.23436 0.94981 1.00207 0.96937 1.18293 0.84618 0.86057 0.99907 1.43882 1.56280 1.09286 1.07756 1.19525 1.29599 1.15942 0.83016 0.91012 1.25963 0.95264 0.96596 1.02117 1.70172 1.18035 1.26902 1.35642 0.85092 0.78257 0.78612 0.77296 1.18857 1.20333 1.20431 1.20954 0.83179 0.84035 0.88866 1.90480 1.52161 1.25654 1.82161 1.21631 1.00555 0.94186 0.90009 1.59898 1.61857 1.05802 1.01125 1.22603 1.04393 0.97041 0.86575 1.23481 0.95187 1.00608 1.04420 1.23176 0.95057 1.02709 0.99539 0.75157 0.89187 0.88190 0.91831 0.87248 0.92225 0.83907 0.85861 0.89418 0.86736 0.86567 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.50 19.25 74.32 1.43 -8.07 16 2 C -0.15 -6.63 10.75 31.12 0.33 -6.29 16 3 C 0.23 10.08 4.91 84.57 0.42 10.50 16 4 N -0.45 -23.22 2.60 -645.42 -1.68 -24.90 16 5 C -0.35 -20.08 9.28 84.04 0.78 -19.30 16 6 H 0.07 4.43 7.42 -2.91 -0.02 4.41 16 7 C 0.00 0.23 4.83 84.93 0.41 0.64 16 8 N -0.87 -45.36 9.59 21.66 0.21 -45.15 16 9 Si 0.98 42.23 29.61 68.60 2.03 44.27 16 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.44 21.91 7.60 87.66 0.67 22.57 16 14 O -0.62 -36.00 15.87 -3.04 -0.05 -36.05 16 15 C 0.07 2.52 4.63 85.56 0.40 2.92 16 16 N -0.66 -22.83 6.41 -495.59 -3.17 -26.00 16 17 C 0.00 0.10 6.31 44.92 0.28 0.39 16 18 C -0.20 -4.21 10.23 30.62 0.31 -3.90 16 19 C -0.17 -3.65 10.46 30.62 0.32 -3.33 16 20 H 0.23 6.95 7.80 -4.43 -0.03 6.91 16 21 H 0.09 4.13 6.60 -2.39 -0.02 4.12 16 22 H 0.10 3.43 6.69 -2.39 -0.02 3.41 16 23 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 24 H 0.11 3.50 7.42 -2.39 -0.02 3.48 16 25 H 0.06 2.09 7.49 -2.39 -0.02 2.08 16 26 H 0.34 12.70 8.21 -89.69 -0.74 11.96 16 27 H 0.12 2.74 7.90 -2.39 -0.02 2.72 16 28 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 29 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -67.66 274.00 3.08 -64.58 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.39 Total: 27.13 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.35 Total: -3.87 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.64 Total: -96.05 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.05 Total: -36.05 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.27 kcal Total: -67.66 3.08 -64.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300785352.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.180 kcal (2) G-P(sol) polarization free energy of solvation -67.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds