Wall clock time and date at job start Mon Mar 30 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46872 * 178.90099 * 3 2 1 5 5 C 1.37098 * 119.99794 * 82.86315 * 4 3 2 6 6 H 1.08003 * 119.99983 * 162.74138 * 5 4 3 7 7 C 1.38946 * 119.99895 * 342.73397 * 5 4 3 8 8 N 1.31413 * 120.00258 * 6.29885 * 7 5 4 9 9 Si 1.86801 * 119.99764 * 186.29672 * 7 5 4 10 10 H 1.48502 * 109.47409 * 90.00413 * 9 7 5 11 11 H 1.48503 * 109.47087 * 210.00198 * 9 7 5 12 12 H 1.48500 * 109.47558 * 330.00209 * 9 7 5 13 13 C 1.34771 * 120.00409 * 262.85806 * 4 3 2 14 14 O 1.21291 * 120.00440 * 175.21759 * 13 4 3 15 15 C 1.50702 * 119.99642 * 355.22355 * 13 4 3 16 16 C 1.52998 * 115.55381 * 67.46169 * 15 13 4 17 17 N 1.46901 * 109.47440 * 61.97249 * 16 15 13 18 18 C 1.53002 * 117.50011 * 213.12841 * 15 13 4 19 19 C 1.53003 * 117.49726 * 281.78866 * 15 13 4 20 20 H 4.40639 * 5.51421 * 180.02562 * 4 1 2 21 21 H 1.09000 * 109.46787 * 58.90402 * 3 2 1 22 22 H 1.08997 * 109.46994 * 298.90355 * 3 2 1 23 23 H 0.96999 * 119.99560 * 179.97438 * 8 7 5 24 24 H 1.09008 * 109.46905 * 301.97614 * 16 15 13 25 25 H 1.08996 * 109.47623 * 181.98035 * 16 15 13 26 26 H 1.00891 * 111.00189 * 174.95593 * 17 16 15 27 27 H 1.00897 * 111.00089 * 298.91561 * 17 16 15 28 28 H 1.09000 * 117.50517 * 215.00379 * 18 15 13 29 29 H 1.09009 * 117.49698 * 0.02742 * 18 15 13 30 30 H 1.08998 * 117.50384 * 359.97438 * 19 15 13 31 31 H 1.09008 * 117.49679 * 144.97385 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3818 -0.0265 5 6 3.2227 2.0998 1.1381 6 1 3.8273 2.9939 1.1763 7 6 2.5351 1.6771 2.2691 8 7 1.9006 0.5264 2.2605 9 14 2.5127 2.7447 3.8018 10 1 1.3512 3.6682 3.7449 11 1 2.4001 1.8813 5.0048 12 1 3.7689 3.5333 3.8743 13 6 3.4949 1.9467 -1.1956 14 8 3.8158 3.1159 -1.2307 15 6 3.4998 1.1257 -2.4593 16 6 2.1261 0.6703 -2.9559 17 7 1.3061 1.8466 -3.2750 18 6 4.5574 1.4583 -3.5138 19 6 4.6810 0.1791 -2.6821 20 1 -1.0502 -0.0004 0.0002 21 1 3.0095 -0.5299 -0.8800 22 1 3.0096 -0.4959 0.8996 23 1 1.4209 0.2312 3.0502 24 1 1.6346 0.0848 -2.1787 25 1 2.2473 0.0585 -3.8497 26 1 0.4245 1.5731 -3.6822 27 1 1.1642 2.4211 -2.4578 28 1 4.2746 1.3527 -4.5611 29 1 5.2500 2.2707 -3.2932 30 1 5.4547 0.1504 -1.9149 31 1 4.4793 -0.7684 -3.1820 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300830064.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:03 Heat of formation + Delta-G solvation = 46.861618 kcal Electronic energy + Delta-G solvation = -15693.155854 eV Core-core repulsion = 13170.127244 eV Total energy + Delta-G solvation = -2523.028610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07166 -37.92489 -37.04513 -34.28892 -33.69056 -33.08957 -28.47734 -27.13094 -26.16613 -23.42028 -23.25189 -19.97410 -19.69875 -18.31789 -17.64289 -16.95004 -16.79357 -16.05412 -15.73055 -15.49743 -15.23665 -14.67220 -14.05733 -13.96222 -13.60063 -13.07716 -12.99111 -12.78976 -12.49907 -12.35755 -12.18168 -11.51740 -11.34128 -11.05608 -10.94328 -10.47513 -10.23813 -9.84920 -9.52101 -8.24887 -5.95935 1.32899 1.38254 1.48746 1.87733 2.11051 2.32834 2.46838 2.79225 3.09924 3.19973 3.66343 3.83365 3.94926 4.03154 4.16963 4.31714 4.65219 4.71212 4.77187 4.88916 5.01595 5.07508 5.19112 5.30088 5.41821 5.49013 6.05230 6.10537 6.47789 6.58315 7.14404 7.20209 7.43954 8.00755 8.64081 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031444 B = 0.011213 C = 0.009730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.256879 B = 2496.420936 C = 2876.902379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.116 4.116 3 C 0.237 3.763 4 N -0.451 5.451 5 C -0.344 4.344 6 H 0.072 0.928 7 C 0.004 3.996 8 N -0.876 5.876 9 Si 0.984 3.016 10 H -0.281 1.281 11 H -0.268 1.268 12 H -0.274 1.274 13 C 0.477 3.523 14 O -0.629 6.629 15 C -0.158 4.158 16 C 0.102 3.898 17 N -0.845 5.845 18 C -0.135 4.135 19 C -0.145 4.145 20 H 0.226 0.774 21 H 0.089 0.911 22 H 0.099 0.901 23 H 0.271 0.729 24 H 0.039 0.961 25 H 0.103 0.897 26 H 0.350 0.650 27 H 0.328 0.672 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -6.558 -6.816 9.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.118 4.118 3 C 0.115 3.885 4 N -0.168 5.168 5 C -0.472 4.472 6 H 0.090 0.910 7 C -0.198 4.198 8 N -0.514 5.514 9 Si 0.809 3.191 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.199 1.199 13 C 0.267 3.733 14 O -0.516 6.516 15 C -0.162 4.162 16 C -0.029 4.029 17 N -0.374 5.374 18 C -0.172 4.172 19 C -0.182 4.182 20 H 0.243 0.757 21 H 0.107 0.893 22 H 0.117 0.883 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.121 0.879 26 H 0.163 0.837 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.433 -5.931 -7.139 9.291 hybrid contribution -0.968 0.464 1.905 2.186 sum -1.400 -5.468 -5.234 7.697 Atomic orbital electron populations 1.24953 0.96192 1.01015 1.07566 1.23218 0.94684 0.99282 0.94617 1.18499 0.84666 0.83327 1.02013 1.43808 1.55836 1.11816 1.05348 1.19606 1.29497 1.09438 0.88628 0.91024 1.25913 0.94748 0.97602 1.01536 1.70022 1.32434 1.18856 1.30100 0.85062 0.78351 0.78117 0.77572 1.20702 1.19260 1.19896 1.19971 0.82172 0.86935 0.84229 1.90472 1.55463 1.19101 1.86531 1.21277 0.94369 1.04896 0.95654 1.21438 0.89641 0.91777 1.00054 1.58659 1.22389 1.21105 1.35282 1.22859 0.99205 0.98353 0.96813 1.23212 0.96997 0.95537 1.02491 0.75747 0.89303 0.88345 0.91840 0.94275 0.87921 0.83678 0.86120 0.85890 0.90817 0.89511 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.01 19.22 74.32 1.43 -9.58 16 2 C -0.12 -5.05 8.77 31.13 0.27 -4.77 16 3 C 0.24 10.50 4.79 84.57 0.40 10.91 16 4 N -0.45 -23.08 2.61 -645.42 -1.68 -24.76 16 5 C -0.34 -19.54 9.38 84.04 0.79 -18.75 16 6 H 0.07 4.40 7.34 -2.91 -0.02 4.38 16 7 C 0.00 0.20 5.37 84.93 0.46 0.66 16 8 N -0.88 -44.60 7.98 21.66 0.17 -44.43 16 9 Si 0.98 43.05 29.56 68.60 2.03 45.08 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.48 23.74 6.26 87.66 0.55 24.29 16 14 O -0.63 -36.97 16.42 -3.06 -0.05 -37.02 16 15 C -0.16 -5.82 1.02 -52.93 -0.05 -5.87 16 16 C 0.10 3.20 6.29 86.30 0.54 3.75 16 17 N -0.85 -27.80 9.59 -186.71 -1.79 -29.59 16 18 C -0.13 -4.31 9.78 30.62 0.30 -4.01 16 19 C -0.14 -4.15 9.14 30.62 0.28 -3.87 16 20 H 0.23 7.06 7.80 -4.41 -0.03 7.02 16 21 H 0.09 3.31 5.19 -2.39 -0.01 3.30 16 22 H 0.10 4.72 6.44 -2.39 -0.02 4.71 16 23 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 24 H 0.04 1.31 4.31 -2.38 -0.01 1.30 16 25 H 0.10 2.52 8.11 -2.39 -0.02 2.50 16 26 H 0.35 9.19 9.08 -89.70 -0.81 8.37 16 27 H 0.33 13.04 8.45 -89.70 -0.76 12.28 16 28 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.07 2.70 8.03 -2.38 -0.02 2.68 16 30 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.14 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -66.93 264.97 3.23 -63.69 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.41 Total: 34.30 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.97 Total: -7.26 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -3.30 Total: -98.78 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.05 Total: -37.02 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -66.93 3.23 -63.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300830064.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.556 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds