Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47329 * 23.61017 * 3 2 1 5 5 C 1.37188 * 119.99593 * 270.00059 * 4 3 2 6 6 H 1.08003 * 119.99915 * 197.47791 * 5 4 3 7 7 C 1.38878 * 120.00537 * 17.46694 * 5 4 3 8 8 N 1.31476 * 119.99461 * 9.73279 * 7 5 4 9 9 Si 1.86794 * 120.00115 * 189.72416 * 7 5 4 10 10 H 1.48494 * 109.47515 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46929 * 120.00588 * 9 7 5 12 12 H 1.48497 * 109.47126 * 240.00080 * 9 7 5 13 13 C 1.34770 * 119.99896 * 89.99794 * 4 3 2 14 14 O 1.21580 * 120.00531 * 5.03526 * 13 4 3 15 15 N 1.34783 * 119.99800 * 185.03794 * 13 4 3 16 16 C 1.46503 * 119.99845 * 177.00208 * 15 13 4 17 17 C 1.53781 * 113.60982 * 154.99737 * 16 15 13 18 18 C 1.53784 * 87.16892 * 139.93746 * 17 16 15 19 19 C 1.53782 * 113.61151 * 252.49585 * 16 15 13 20 20 H 4.40646 * 5.51402 * 179.97438 * 4 1 2 21 21 H 1.08996 * 109.47117 * 263.60894 * 3 2 1 22 22 H 1.08997 * 109.46829 * 143.60515 * 3 2 1 23 23 H 0.97002 * 119.99735 * 185.16570 * 8 7 5 24 24 H 0.96999 * 119.99903 * 356.99904 * 15 13 4 25 25 H 1.08997 * 112.84888 * 23.80698 * 16 15 13 26 26 H 1.08995 * 113.61811 * 254.52657 * 17 16 15 27 27 H 1.09000 * 113.61415 * 25.35468 * 17 16 15 28 28 H 1.09001 * 113.61397 * 89.16091 * 18 17 16 29 29 H 1.09003 * 113.61349 * 220.05864 * 18 17 16 30 30 H 1.09000 * 113.61551 * 334.56909 * 19 16 15 31 31 H 1.08996 * 113.61246 * 105.39237 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2647 -0.5532 5 6 3.3641 -2.3330 0.2765 6 1 3.9769 -3.1563 -0.0599 7 6 2.8083 -2.3558 1.5490 8 7 1.9131 -1.4558 1.8914 9 14 3.3325 -3.6650 2.7739 10 1 4.3457 -4.5517 2.1475 11 1 3.9184 -3.0145 3.9733 12 1 2.1504 -4.4693 3.1749 13 6 3.3597 -1.3793 -1.8771 14 8 3.2449 -0.4082 -2.5995 15 7 3.7116 -2.5705 -2.4003 16 6 3.8917 -2.7105 -3.8475 17 6 4.8367 -3.8576 -4.2424 18 6 3.8635 -4.1611 -5.3938 19 6 2.7680 -3.5046 -4.5341 20 1 -1.0498 -0.0004 0.0000 21 1 3.0093 0.1152 1.0212 22 1 3.0089 0.8280 -0.6098 23 1 1.5802 -1.4249 2.8020 24 1 3.8456 -3.3351 -1.8187 25 1 4.1233 -1.7654 -4.3385 26 1 5.8174 -3.5199 -4.5772 27 1 4.8938 -4.6521 -3.4983 28 1 4.0864 -3.6136 -6.3097 29 1 3.7067 -5.2263 -5.5638 30 1 2.2585 -4.2032 -3.8704 31 1 2.0780 -2.8816 -5.1031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300831109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = 63.441723 kcal Electronic energy + Delta-G solvation = -15173.363467 eV Core-core repulsion = 12651.053825 eV Total energy + Delta-G solvation = -2522.309643 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.35585 -37.80380 -35.04097 -32.55341 -31.60766 -30.90819 -26.44202 -25.35857 -24.95770 -23.49049 -19.62910 -19.44873 -18.02930 -17.19663 -16.41084 -15.50991 -14.93210 -14.41226 -14.17293 -13.92594 -13.11841 -12.80806 -12.32854 -12.20419 -11.80683 -11.80194 -11.45292 -11.08173 -10.95971 -10.55074 -10.42959 -10.32591 -10.10157 -9.38966 -9.20034 -8.75152 -8.52368 -8.12229 -7.75002 -6.20886 -3.91158 3.12988 3.21347 3.24241 3.74105 4.15650 4.31817 4.43420 4.51977 4.86652 4.89943 5.10955 5.17234 5.35729 5.65917 5.84466 5.87371 5.95902 6.02635 6.04668 6.27552 6.36906 6.64790 6.79503 7.08023 7.33267 7.35042 7.57234 7.75062 8.24866 8.54194 9.12828 9.16959 9.73254 10.06616 10.73922 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.009797 C = 0.007817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.239933 B = 2857.410384 C = 3581.288483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.082 4.082 3 C 0.260 3.740 4 N -0.473 5.473 5 C -0.332 4.332 6 H 0.092 0.908 7 C 0.032 3.968 8 N -0.866 5.866 9 Si 0.922 3.078 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.674 3.326 14 O -0.641 6.641 15 N -0.737 5.737 16 C 0.148 3.852 17 C -0.150 4.150 18 C -0.140 4.140 19 C -0.157 4.157 20 H 0.194 0.806 21 H 0.108 0.892 22 H 0.064 0.936 23 H 0.267 0.733 24 H 0.397 0.603 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 -4.617 -5.909 8.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.084 4.084 3 C 0.137 3.863 4 N -0.196 5.196 5 C -0.459 4.459 6 H 0.110 0.890 7 C -0.171 4.171 8 N -0.504 5.504 9 Si 0.749 3.251 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.376 3.624 14 O -0.526 6.526 15 N -0.393 5.393 16 C 0.041 3.959 17 C -0.188 4.188 18 C -0.178 4.178 19 C -0.196 4.196 20 H 0.211 0.789 21 H 0.125 0.875 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.234 0.766 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.038 -3.918 -6.197 7.936 hybrid contribution -0.116 -1.203 1.160 1.675 sum 2.922 -5.121 -5.037 7.754 Atomic orbital electron populations 1.24086 0.95249 1.04445 1.07324 1.23236 0.94419 0.96311 0.94469 1.17968 0.83879 0.85034 0.99412 1.42801 1.61965 1.11827 1.03040 1.19419 1.29855 0.99930 0.96711 0.89028 1.25220 0.94719 0.98335 0.98874 1.70053 1.26457 1.35078 1.18847 0.85953 0.78198 0.80430 0.80517 1.19605 1.20715 1.20963 1.15962 0.80846 0.83111 0.82466 1.90731 1.63970 1.37775 1.60127 1.45035 1.76207 1.11672 1.06387 1.22116 0.94608 0.97705 0.81465 1.23351 0.98215 0.98971 0.98301 1.22697 0.97386 1.00576 0.97109 1.23521 0.97510 0.99719 0.98872 0.78923 0.87476 0.91834 0.92224 0.76622 0.87458 0.91340 0.89975 0.90266 0.91473 0.90063 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.98 19.25 29.55 0.57 -6.41 16 2 C -0.08 -2.12 11.16 -37.12 -0.41 -2.54 16 3 C 0.26 6.60 5.21 -6.83 -0.04 6.57 16 4 N -0.47 -12.21 2.59 -123.32 -0.32 -12.53 16 5 C -0.33 -8.35 9.21 -14.92 -0.14 -8.49 16 6 H 0.09 2.14 6.22 -52.48 -0.33 1.82 16 7 C 0.03 0.81 5.17 -17.47 -0.09 0.72 16 8 N -0.87 -22.74 8.56 55.49 0.48 -22.27 16 9 Si 0.92 19.50 29.57 -169.99 -5.03 14.48 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 C 0.67 16.90 8.22 -86.92 -0.71 16.18 16 14 O -0.64 -17.56 15.48 5.30 0.08 -17.47 16 15 N -0.74 -15.21 5.25 -57.88 -0.30 -15.51 16 16 C 0.15 2.54 4.26 -67.12 -0.29 2.25 16 17 C -0.15 -1.96 7.83 -25.92 -0.20 -2.17 16 18 C -0.14 -1.66 8.10 -25.83 -0.21 -1.86 16 19 C -0.16 -2.35 7.88 -25.83 -0.20 -2.56 16 20 H 0.19 3.83 7.80 -54.10 -0.42 3.41 16 21 H 0.11 2.73 6.47 -51.93 -0.34 2.39 16 22 H 0.06 1.56 7.36 -51.93 -0.38 1.18 16 23 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 24 H 0.40 7.77 6.52 -40.82 -0.27 7.50 16 25 H 0.11 1.99 7.43 -51.93 -0.39 1.61 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 268.00 15.07 4.04 4.04 Total: -1.00 -30.02 268.00 -6.57 -36.59 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -3.79 Total: 10.98 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.72 Total: 1.69 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.15 Total: -50.30 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.08 Total: -17.47 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.02 -6.57 -36.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300831109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.030 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds