Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47329 * 23.61017 * 3 2 1 5 5 C 1.37188 * 119.99593 * 270.00059 * 4 3 2 6 6 H 1.08003 * 119.99915 * 197.47791 * 5 4 3 7 7 C 1.38878 * 120.00537 * 17.46694 * 5 4 3 8 8 N 1.31476 * 119.99461 * 9.73279 * 7 5 4 9 9 Si 1.86794 * 120.00115 * 189.72416 * 7 5 4 10 10 H 1.48494 * 109.47515 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46929 * 120.00588 * 9 7 5 12 12 H 1.48497 * 109.47126 * 240.00080 * 9 7 5 13 13 C 1.34770 * 119.99896 * 89.99794 * 4 3 2 14 14 O 1.21580 * 120.00531 * 5.03526 * 13 4 3 15 15 N 1.34783 * 119.99800 * 185.03794 * 13 4 3 16 16 C 1.46503 * 119.99845 * 177.00208 * 15 13 4 17 17 C 1.53781 * 113.60982 * 154.99737 * 16 15 13 18 18 C 1.53784 * 87.16892 * 139.93746 * 17 16 15 19 19 C 1.53782 * 113.61151 * 252.49585 * 16 15 13 20 20 H 4.40646 * 5.51402 * 179.97438 * 4 1 2 21 21 H 1.08996 * 109.47117 * 263.60894 * 3 2 1 22 22 H 1.08997 * 109.46829 * 143.60515 * 3 2 1 23 23 H 0.97002 * 119.99735 * 185.16570 * 8 7 5 24 24 H 0.96999 * 119.99903 * 356.99904 * 15 13 4 25 25 H 1.08997 * 112.84888 * 23.80698 * 16 15 13 26 26 H 1.08995 * 113.61811 * 254.52657 * 17 16 15 27 27 H 1.09000 * 113.61415 * 25.35468 * 17 16 15 28 28 H 1.09001 * 113.61397 * 89.16091 * 18 17 16 29 29 H 1.09003 * 113.61349 * 220.05864 * 18 17 16 30 30 H 1.09000 * 113.61551 * 334.56909 * 19 16 15 31 31 H 1.08996 * 113.61246 * 105.39237 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2647 -0.5532 5 6 3.3641 -2.3330 0.2765 6 1 3.9769 -3.1563 -0.0599 7 6 2.8083 -2.3558 1.5490 8 7 1.9131 -1.4558 1.8914 9 14 3.3325 -3.6650 2.7739 10 1 4.3457 -4.5517 2.1475 11 1 3.9184 -3.0145 3.9733 12 1 2.1504 -4.4693 3.1749 13 6 3.3597 -1.3793 -1.8771 14 8 3.2449 -0.4082 -2.5995 15 7 3.7116 -2.5705 -2.4003 16 6 3.8917 -2.7105 -3.8475 17 6 4.8367 -3.8576 -4.2424 18 6 3.8635 -4.1611 -5.3938 19 6 2.7680 -3.5046 -4.5341 20 1 -1.0498 -0.0004 0.0000 21 1 3.0093 0.1152 1.0212 22 1 3.0089 0.8280 -0.6098 23 1 1.5802 -1.4249 2.8020 24 1 3.8456 -3.3351 -1.8187 25 1 4.1233 -1.7654 -4.3385 26 1 5.8174 -3.5199 -4.5772 27 1 4.8938 -4.6521 -3.4983 28 1 4.0864 -3.6136 -6.3097 29 1 3.7067 -5.2263 -5.5638 30 1 2.2585 -4.2032 -3.8704 31 1 2.0780 -2.8816 -5.1031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300831109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = 45.363316 kcal Electronic energy + Delta-G solvation = -15174.147406 eV Core-core repulsion = 12651.053825 eV Total energy + Delta-G solvation = -2523.093581 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05649 -39.25736 -36.97551 -34.31423 -33.54275 -32.76203 -28.33036 -26.75229 -26.46682 -24.96398 -21.47697 -20.73603 -19.87592 -18.95696 -18.23734 -17.10293 -16.37344 -16.08228 -15.97829 -15.66505 -14.94111 -14.51997 -13.87163 -13.63027 -13.33851 -13.29222 -13.16598 -12.79661 -12.47795 -12.11071 -12.05344 -11.46825 -11.29853 -11.27865 -11.16391 -10.71194 -10.49188 -9.94434 -9.53478 -8.11360 -5.88065 1.46377 1.49736 1.61410 1.91226 2.33858 2.45198 2.51512 2.72625 3.21995 3.70812 3.82051 3.84270 4.03232 4.04985 4.11589 4.71608 4.82771 4.85660 4.87673 5.07068 5.10024 5.11258 5.22969 5.40964 5.46716 5.51045 5.81896 5.98245 6.37171 6.72721 7.19469 7.23316 7.84859 8.14198 8.83281 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.009797 C = 0.007817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.239933 B = 2857.410384 C = 3581.288483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.128 4.128 3 C 0.263 3.737 4 N -0.485 5.485 5 C -0.349 4.349 6 H 0.107 0.893 7 C -0.011 4.011 8 N -0.892 5.892 9 Si 0.994 3.006 10 H -0.256 1.256 11 H -0.282 1.282 12 H -0.289 1.289 13 C 0.662 3.338 14 O -0.674 6.674 15 N -0.727 5.727 16 C 0.123 3.877 17 C -0.135 4.135 18 C -0.119 4.119 19 C -0.159 4.159 20 H 0.231 0.769 21 H 0.099 0.901 22 H 0.058 0.942 23 H 0.265 0.735 24 H 0.403 0.597 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -6.724 -6.253 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.130 4.130 3 C 0.140 3.860 4 N -0.208 5.208 5 C -0.476 4.476 6 H 0.124 0.876 7 C -0.212 4.212 8 N -0.530 5.530 9 Si 0.818 3.182 10 H -0.179 1.179 11 H -0.208 1.208 12 H -0.215 1.215 13 C 0.364 3.636 14 O -0.561 6.561 15 N -0.383 5.383 16 C 0.017 3.983 17 C -0.174 4.174 18 C -0.157 4.157 19 C -0.199 4.199 20 H 0.247 0.753 21 H 0.117 0.883 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.240 0.760 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.436 -6.055 -6.571 9.573 hybrid contribution -0.287 -0.500 1.237 1.365 sum 3.150 -6.555 -5.334 9.019 Atomic orbital electron populations 1.24990 0.96273 1.02707 1.05551 1.23598 0.95219 0.98002 0.96147 1.17843 0.84291 0.85188 0.98727 1.42992 1.62128 1.12090 1.03557 1.19833 1.30378 1.00257 0.97101 0.87560 1.26092 0.94515 1.00297 1.00321 1.70200 1.27229 1.36599 1.18974 0.84857 0.77716 0.77778 0.77834 1.17946 1.20764 1.21525 1.16270 0.81038 0.84037 0.82237 1.90685 1.65469 1.39192 1.60795 1.45049 1.75040 1.10199 1.07973 1.22526 0.97911 0.98507 0.79328 1.23306 0.98344 0.96966 0.98740 1.22654 0.94446 1.01908 0.96654 1.23519 0.97640 0.99459 0.99258 0.75286 0.88330 0.92358 0.92447 0.75996 0.89599 0.89972 0.88989 0.88856 0.89079 0.90394 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -13.06 19.25 74.32 1.43 -11.63 16 2 C -0.13 -6.68 11.16 31.13 0.35 -6.33 16 3 C 0.26 13.77 5.21 84.57 0.44 14.21 16 4 N -0.48 -25.44 2.59 -662.34 -1.71 -27.15 16 5 C -0.35 -17.50 9.21 84.01 0.77 -16.72 16 6 H 0.11 4.86 6.22 -2.91 -0.02 4.84 16 7 C -0.01 -0.55 5.17 84.90 0.44 -0.11 16 8 N -0.89 -46.97 8.56 21.65 0.19 -46.78 16 9 Si 0.99 39.33 29.57 68.60 2.03 41.36 16 10 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 11 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.29 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.66 33.84 8.22 179.05 1.47 35.31 16 14 O -0.67 -38.04 15.48 -3.97 -0.06 -38.10 16 15 N -0.73 -29.89 5.25 -455.29 -2.39 -32.28 16 16 C 0.12 4.13 4.26 45.52 0.19 4.33 16 17 C -0.14 -3.18 7.83 31.12 0.24 -2.94 16 18 C -0.12 -2.43 8.10 31.18 0.25 -2.18 16 19 C -0.16 -4.58 7.88 31.18 0.25 -4.33 16 20 H 0.23 8.60 7.80 -4.43 -0.03 8.56 16 21 H 0.10 5.22 6.47 -2.39 -0.02 5.20 16 22 H 0.06 3.01 7.36 -2.39 -0.02 3.00 16 23 H 0.27 13.41 8.32 -92.71 -0.77 12.64 16 24 H 0.40 15.40 6.52 -92.71 -0.60 14.80 16 25 H 0.09 3.24 7.43 -2.39 -0.02 3.23 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -64.71 268.00 4.42 -60.30 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.53 Total: 33.05 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.84 Total: 9.60 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -3.92 Total: -106.22 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.06 Total: -38.10 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -64.71 4.42 -60.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300831109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.659 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds