Wall clock time and date at job start Mon Mar 30 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47241 * 23.01539 * 3 2 1 5 5 C 1.37094 * 119.99886 * 271.78705 * 4 3 2 6 6 H 1.08004 * 120.00312 * 188.13729 * 5 4 3 7 7 C 1.38949 * 119.99978 * 8.14841 * 5 4 3 8 8 N 1.31407 * 120.00286 * 24.17039 * 7 5 4 9 9 Si 1.86806 * 119.99916 * 204.17627 * 7 5 4 10 10 H 1.48498 * 109.46888 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47554 * 119.99643 * 9 7 5 12 12 H 1.48503 * 109.46662 * 239.99773 * 9 7 5 13 13 C 1.34773 * 119.99866 * 91.79357 * 4 3 2 14 14 O 1.21295 * 120.00149 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00380 * 359.72278 * 13 4 3 16 16 H 1.08997 * 110.29172 * 59.57070 * 15 13 4 17 17 C 1.54259 * 110.32846 * 181.70477 * 15 13 4 18 18 C 1.54374 * 105.06214 * 118.89495 * 17 15 13 19 19 N 1.48556 * 104.59543 * 23.85206 * 18 17 15 20 20 C 1.48712 * 104.29110 * 320.57404 * 19 18 17 21 21 H 4.40644 * 5.51479 * 180.02562 * 4 1 2 22 22 H 1.09003 * 109.47224 * 263.01063 * 3 2 1 23 23 H 1.09008 * 109.46647 * 143.01673 * 3 2 1 24 24 H 0.97000 * 120.00153 * 180.02562 * 8 7 5 25 25 H 1.08996 * 110.32459 * 237.79094 * 17 15 13 26 26 H 1.09000 * 110.32024 * 359.97438 * 17 15 13 27 27 H 1.09003 * 110.41407 * 142.63748 * 18 17 15 28 28 H 1.09007 * 110.41125 * 264.95511 * 18 17 15 29 29 H 1.00901 * 111.00020 * 200.95935 * 19 18 17 30 30 H 1.09004 * 110.39274 * 280.64152 * 20 19 18 31 31 H 1.09002 * 110.51303 * 158.14637 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2704 -0.5400 5 6 3.3290 -2.3404 0.2947 6 1 3.8113 -3.2333 -0.0750 7 6 2.9049 -2.2764 1.6164 8 7 1.9372 -1.4552 1.9569 9 14 3.7106 -3.3576 2.9092 10 1 4.7657 -4.1869 2.2733 11 1 4.3186 -2.5030 3.9604 12 1 2.6876 -4.2430 3.5214 13 6 3.3940 -1.3877 -1.8574 14 8 3.7993 -2.4399 -2.3045 15 6 3.1749 -0.2133 -2.7760 16 1 3.7909 0.6303 -2.4646 17 6 3.4989 -0.6045 -4.2326 18 6 2.1761 -0.4092 -5.0041 19 7 1.4144 0.5785 -4.1972 20 6 1.6839 0.1872 -2.7880 21 1 -1.0499 -0.0003 -0.0003 22 1 3.0093 0.1259 1.0200 23 1 3.0089 0.8218 -0.6183 24 1 1.6414 -1.4103 2.8796 25 1 4.2727 0.0481 -4.6366 26 1 3.8169 -1.6459 -4.2830 27 1 2.3722 -0.0152 -6.0013 28 1 1.6312 -1.3511 -5.0689 29 1 0.4279 0.5303 -4.4037 30 1 1.0604 -0.6603 -2.5032 31 1 1.5112 1.0295 -2.1180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300865167.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:32 Heat of formation + Delta-G solvation = 42.251960 kcal Electronic energy + Delta-G solvation = -15594.964153 eV Core-core repulsion = 13071.735653 eV Total energy + Delta-G solvation = -2523.228500 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39957 -36.91109 -35.23307 -32.17833 -31.27982 -29.97567 -28.50931 -26.41108 -24.70411 -21.59276 -21.04618 -18.55596 -17.89418 -16.72084 -16.49861 -16.00088 -14.90393 -14.27034 -14.05480 -13.89304 -13.24479 -12.70637 -12.51230 -12.46892 -11.75647 -11.58190 -11.53074 -11.07428 -10.87121 -10.69006 -10.48671 -10.29265 -10.24105 -9.34930 -9.26532 -8.85014 -8.47898 -8.26356 -7.96224 -6.36453 -3.83648 3.11016 3.24341 3.31490 3.65100 3.89691 4.07850 4.16719 4.56596 4.93877 5.02733 5.16941 5.18792 5.50649 5.52067 5.67135 5.82687 5.98823 6.06285 6.22026 6.29171 6.41307 6.49123 6.59641 6.78854 7.01203 7.04942 7.51573 7.53941 8.00050 8.40071 8.84708 9.10781 9.34487 9.88463 10.62063 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037683 B = 0.010053 C = 0.008378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.857640 B = 2784.664697 C = 3341.100607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.098 4.098 3 C 0.228 3.772 4 N -0.438 5.438 5 C -0.316 4.316 6 H 0.107 0.893 7 C 0.031 3.969 8 N -0.859 5.859 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.450 3.550 14 O -0.584 6.584 15 C -0.106 4.106 16 H 0.088 0.912 17 C -0.114 4.114 18 C 0.036 3.964 19 N -0.669 5.669 20 C 0.049 3.951 21 H 0.197 0.803 22 H 0.110 0.890 23 H 0.064 0.936 24 H 0.268 0.732 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.332 0.668 30 H 0.048 0.952 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 5.556 -5.273 7.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.100 4.100 3 C 0.105 3.895 4 N -0.156 5.156 5 C -0.443 4.443 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.497 5.497 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.210 1.210 13 C 0.238 3.762 14 O -0.469 6.469 15 C -0.128 4.128 16 H 0.106 0.894 17 C -0.152 4.152 18 C -0.094 4.094 19 N -0.297 5.297 20 C -0.080 4.080 21 H 0.214 0.786 22 H 0.128 0.872 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.146 0.854 30 H 0.067 0.933 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.502 5.646 -5.332 7.782 hybrid contribution -0.693 -1.287 1.076 1.815 sum -1.195 4.359 -4.257 6.209 Atomic orbital electron populations 1.24182 0.95288 1.03209 1.06130 1.22964 0.94122 0.97415 0.95508 1.18429 0.84565 0.85537 1.00945 1.43748 1.55661 1.10559 1.05596 1.19742 1.37406 0.96662 0.90471 0.87541 1.25240 0.95219 0.98266 0.98547 1.70123 1.22533 1.38277 1.18791 0.85996 0.79519 0.79670 0.80327 1.19205 1.20541 1.20960 1.19861 0.84582 0.89380 0.82346 1.90480 1.51526 1.30154 1.74747 1.21872 0.97083 0.97889 0.95956 0.89374 1.22268 0.96555 1.03665 0.92731 1.22909 0.95118 0.93864 0.97489 1.63804 1.13124 1.48632 1.04153 1.23114 0.94870 0.99914 0.90099 0.78617 0.87233 0.91849 0.92140 0.91534 0.88902 0.90640 0.94350 0.85415 0.93329 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.49 19.00 29.55 0.56 -4.93 16 2 C -0.10 -2.16 8.06 -37.12 -0.30 -2.46 16 3 C 0.23 5.02 4.75 -6.83 -0.03 4.98 16 4 N -0.44 -10.99 2.59 -117.93 -0.30 -11.30 16 5 C -0.32 -8.66 9.43 -14.94 -0.14 -8.80 16 6 H 0.11 3.11 7.30 -52.48 -0.38 2.72 16 7 C 0.03 0.81 4.93 -17.47 -0.09 0.72 16 8 N -0.86 -22.12 9.01 55.50 0.50 -21.62 16 9 Si 0.92 20.36 29.62 -169.99 -5.03 15.32 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.45 10.90 6.89 -10.99 -0.08 10.83 16 14 O -0.58 -16.06 14.85 5.54 0.08 -15.98 16 15 C -0.11 -2.02 2.53 -90.39 -0.23 -2.25 16 16 H 0.09 1.55 7.40 -51.93 -0.38 1.16 16 17 C -0.11 -1.96 6.59 -25.35 -0.17 -2.13 16 18 C 0.04 0.54 7.47 -2.19 -0.02 0.52 16 19 N -0.67 -10.27 7.62 -109.54 -0.84 -11.11 16 20 C 0.05 0.88 4.86 -2.09 -0.01 0.87 16 21 H 0.20 3.30 7.80 -54.10 -0.42 2.88 16 22 H 0.11 2.54 6.38 -51.93 -0.33 2.21 16 23 H 0.06 1.18 5.80 -51.92 -0.30 0.88 16 24 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.80 6.46 -51.93 -0.34 1.47 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.33 4.45 8.92 -39.29 -0.35 4.09 16 30 H 0.05 0.99 7.15 -51.93 -0.37 0.62 16 31 H 0.09 1.51 6.16 -51.93 -0.32 1.19 16 LS Contribution 255.60 15.07 3.85 3.85 Total: -1.00 -30.01 255.60 -5.84 -35.85 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -3.60 Total: 7.62 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.49 Total: -2.64 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.64 Total: -44.03 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.08 Total: -15.98 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.01 -5.84 -35.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300865167.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.102 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds